RNA id: XM_026936237.2


Basic Information

Item Value
RNA id XM_026936237.2
length 3227
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC113540054
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 30037408 ~ 30043011 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCTTTCCGCTCCGAAGTGAATTCCACCACTCTGGCAACCCAGATCCTTAACTAGCTTCATAATTGAAGAGGAGTGACTATGCAAGATCCAACAAATGACTTCAGCATCATTCCATCATGGAACAAAGAGTTTGTGTACCTGATTGGTCTGGAAGAGGTGGTCCAGTTTCGCTTAGAGTGGCTGGACAAGACTGTATACACTGCGCCTAACAAACATAGAACCAGGGGGAGACCAAAGAAGTTTTCTATACCTGCTGTTGTGCCAGCAACTCTTCCCAAAGATCCATTCACCTGTGCGAAGTGCAACACTGATGTCTCTTGTTCATGGAAACCAGACGTGAACAGTTCCATCCTGTGTCACGCTTGTGTTAAGTGCAGTTGGAGGAAAGATCACTGGCTCTCTAGTGGACCAACAGAGACCATTATCAAATCAATTTCTGACAACTCTTCCAGTCTCAGTAAACCTGTGTGGAATGAGCCCCGGTCTATGAAAGAAGCTGTCTTCCCTTTGCAACATTCCTCTCATTCAGTCCCACAAGAGTGTGATCAGCAGGTCCCCAAGAACTCCTTATCTTCCTCTTCCAATTTTCACCCTGATTCACCTTTCTGTTGCTCCTCCCCTCTTTCCTCAGATCTTTCCTCCCCACCTGGATTTTACTCTGATACATCTTCCCAGTGgtcctcctccttttcctcaGATGACTACCCATGCCTTTATCATTCCTCATCCTCCCCTGGTTCTTCTCTTTGCGATGGCTCTTCACCTTCGTATCTCCCTTCTTACTCAGATCTTaactcttcttcttcatccATGTCCCCATCACCATCTGGTTCTCCACCAAAAAATTCAAGTAAGTGGGTCTCGCAGAAGGGTAAAACACCTTACTGGATGGAGTTTCCACTTACCAAGGCTTTACTTATAGATGACAAGGCTGAGCAAGAAAcgaagaaagagaaggaagaacAGTTGACAAGGAGCAAGTCACAATGCAAAGAAGAGAAGACTGGGAAGATGGCCGCCTTAAGTGTACCTTCATCATCATCGAATCAGCGGATCCTGCCAAAGACTCAACCTGCGCTCCCTGACTCGgttccatcatcatcaccattgcTCAGTGTTAGTAAACACCAATTTCAGACTCAGATATTAACATCAGATCTGCAGAAGACAAcaagtgcagaaaaaaacaaactgaccATGGAAGAAGGGTTGAAGCCTGGTGATGGCAGTTTACAAAAGATAACTCCTAATATGTCATGTGGTTACATTTCCTCAAAAAAATCAGGATCTTCTACCTACACCTTGGATTCTGAGAAGTCCAAGTCCACAATCCGCTATCTTCCCACAACTTGGTCAGCTGTCTCAGGCAGCGTAAGACAGCAAGATTCGAGGTCGATTCCAAGATGCTTTGATGATAATAAAAAAgagtccatcatgaagaacggAAAGTTTGGTACTAAGGTGCAACATCAGGTGTCCCATGCTCACCCCACTTCATCTCGGATCAGTTCAGCTCCTACACACGCGTCCTTCTTATCCCAAACTGCGTTGTCCTCCAACCAGGCAAAGGCCATCCCTCAGAATAAGGCGAAATGGGTAGCAGCTCCAAATCAGAAGATTGATAAATGGATTCAGAAGCCAGAATCCTCCATGGGGTCTCATGGCAGCTATTCATCCTggtcttctgcttcttcttcttcttcatttgaTCAACTGAGAAAGTGAACCAGCAGGTTCTGGTGTCACCGAAGATgaaaattttcattacaaagtTCAGGTCAACTCGTAACGGGAAGCCTTGCGACCCCAAGTGAGAGAAGGATGCAGTTAGGTTTCTTTAGCTTCCTGACCCTCTATCCTACCTTACCTTagccatttctttgttttgctgCCCCTTGAGCTCTCTTACAGAAATGCTGTCAAGTTCTATGCACTACAGGGTTCCAATTTGCTCTTTAAACACTCTGTTACTTTGCATCTTTCCAAGATGTTATAGAGCAAGGAGTGTCCACTCTTATCCGCAAATGGgcggtgtggctgcaggttttctttCCAAACAATCAAGAGCCACACCAAGTGCAGAACCTGCAGAACCTCCGCTGTGGCTTGTGGGttgtttggaatgaaaacctgcagccacaccagaGGTTCTGCAGGTTCTGTACCAGGTTTGTTTCATGATTGGTTTAGAACGCAAACCTGCATCCACACTGGTTCTTTTTGCGGCTAAGATTGGACACTCCGTGCTTAGAAGATCAATGTCTTCCTTCCAGGGTTGATTTGAAGTCCCTCTATTTGGAGAAGACAGGTTCATGAACATGTTTCATAAGTTTCAGATtataagtgtatttttttttgttcctctaTTTGTACtcaaaagtttgttttgttgcagtttatttattgttagaaATTATTTAATAGAAGGCAAACCTTTGCCTTGAAAAAAATGGTTTGgttaaaaaatacaagaatTACATTTTGTGACGTTTGGTTTATACATCTTCCGGTGATTATAGTACTGAGAACAAAGTAACTTAATTGATTGAATATTTGTTGTGGCATACAAGAAGTCAGTGTGTCATAACTTATATCAGTTTCAGTCagtaaatcaaaataaagcgTTCTTGTTTGTCGGAAGAATAAAAAGCAGCGTGCTACAAAATGCAAAGAGGCTAATGTTTTGATTCATTCTGTGGTTGTGAGTTGAGATCGGCGTtcctataatatataatgtgacAAGACACTTGACAATTGTGACTGCTGTTTCTAAaaccaccaataggaggacggtaTAGGATTACGCAAAACTCGCAAGATAACTACAAATATGGTATGGTGAAATGgcgaaatgtaaacaaaacatactAACAGACAGGATAAAAAGTATCTGTATTACTGCAAACTcactttgaaaaatgtttctgtttacacGACCGCTTTATATGCACAAAAGATGATATAAGCAGAACGTAGTCTTTAATCgtaggtctatcgttagaggatcttcatcgtataatctgacatggagaacgtTATCAGACGATCTGTTAGAATTCGTCTAAGGTTTTATTAGGATCTTGTACAACGTAGCGAGTAATTATCTTAAAAGACTGGCTTAGGTTTACAACGTAGGATGCTGATTAATATTCCTTACcttatatttaatgctaattCTTAGCTAATTAGTTTGCGGATTTTAGATTTGAGCATGTTTATATTGGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87230 lncRNA downstream 12372 29976671 ~ 30025036 (-) True G73618
TU87217 lncRNA downstream 107919 29929264 ~ 29929489 (-) True G73607
TU87081 lncRNA downstream 190517 29846674 ~ 29846891 (-) True G73492
TU87071 lncRNA downstream 243764 29792212 ~ 29793644 (-) True G73485
TU87065 lncRNA downstream 257276 29778555 ~ 29780132 (-) True G73481
TU87275 lncRNA upstream 52779 30095790 ~ 30097973 (-) True G73652
TU87279 lncRNA upstream 58429 30101440 ~ 30102870 (-) True G73656
XR_004578005.1 lncRNA upstream 85717 30128728 ~ 30138872 (-) True LOC113540631
TU87298 lncRNA upstream 143885 30186896 ~ 30191121 (-) True G73670
TU87313 lncRNA upstream 152668 30195679 ~ 30197576 (-) True G73684
XM_034303698.1 mRNA downstream 342 30025069 ~ 30037066 (-) False wdr48b
XM_034303697.1 mRNA downstream 344 30025069 ~ 30037064 (-) False wdr48b
XM_034303699.1 mRNA downstream 882 30025069 ~ 30036526 (-) True wdr48b
XM_034303703.1 mRNA downstream 22843 29903744 ~ 30014565 (-) False LOC113540096
XM_034303702.1 mRNA downstream 22843 29903744 ~ 30014565 (-) False LOC113540096
XM_034303448.1 mRNA upstream 7549 30050560 ~ 30056720 (-) True odf3l2a
XM_026937101.2 mRNA upstream 7549 30050560 ~ 30056408 (-) False odf3l2a
XM_034303327.1 mRNA upstream 21039 30064050 ~ 30084861 (-) True crlf1a
XM_026936328.2 mRNA upstream 169378 30212389 ~ 30223320 (-) False acvr1l
XM_026936330.2 mRNA upstream 169378 30212389 ~ 30223163 (-) True acvr1l
TU87233 other downstream 14883 30019506 ~ 30022525 (-) True G73619
XR_003403975.2 other downstream 306551 29724588 ~ 29730857 (-) True zgc:110366
XR_003404065.2 other downstream 461681 29564602 ~ 29575727 (-) False LOC113540665
XR_003404077.1 other downstream 512347 29524989 ~ 29525061 (-) True LOC113540703
XR_003404071.2 other downstream 512721 29524509 ~ 29524687 (-) True LOC113540697
TU87613 other upstream 698658 30741669 ~ 30743826 (-) False LOC113540055
TU87656 other upstream 730452 30773463 ~ 30775819 (-) True ccl20l
LOC113540068 other upstream 1824071 31867082 ~ 31870008 (-) True LOC113540068
LOC117597010 other upstream 1827507 31870518 ~ 31871874 (-) True LOC117597010
TU88351 other upstream 1828148 31871159 ~ 31871639 (-) False LOC117597010

Expression Profile