RNA id: XM_026936245.2


Basic Information

Item Value
RNA id XM_026936245.2
length 4056
RNA type mRNA
GC content 0.44
exon number 10
gene id trip6
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13232634 ~ 13242400 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTTTTCTACACAATAACCTCAGCACTGATAGAATCCGGCTTCGCTAGTGATTTTAATCGCTTTAAGGCGACCATTTACAAGTTGTTCTTATCTCAGGTTAAACAAGCTAGCAGTTGAAAGAGGTTAGTGCACCCTCCCACTAATGGTAAGAGTGTAGCGGTGACTCGGATACACTACCGGCGAATGCAACATGTTGTTTTCGAGCCTGTTTGCAGTGGAAGCCCGTTATGTCCGGTCCTACCTGGCTGCCTCCGAGAACTCTGAGTAGCCCTGAAAGACCTGCAGCACAGATGTCACACTCTGGACCTGCTTTCTACAGACCACCCAAAAAAGGTCCATCTGACCAGAGAGCCAAATATGGTGTGTATGACCAAAATGGAGCACCAGGTGGAAATGGTGTACCCTCAAGGTACATAGCCACTGGACCCTCAGGTGGAAGCGTGCATCACCAGCACCAAGACGGTTATTCAGGGCCGCCATCCTATCACCCCCTTTCTCCAAAAGGAGAGCACTATTATGCCCCAGGGCATGGACCCAACGACGATCATCTCTTCTGGAGCACACACATGACCAGCTATGATCACCATACACGTGGGTCTGATAAACACCTCTCTAGTATTGATGCAGAGATAGATTCTCTCACATGCATGCTGGCTGACATGGACAGCCATCCTCAGAACACAAGCACACAGCTATACGACAATGTGCCTTACAACAAGCATCTCCACAGCGAGCGCTACAAAACATCCAACCAGACAGGTGCTCCGTCCCAGGCCAGACCCTCCATGGGTTACCCTCCTCATCCTCAAAGCCAGTACCATCCTTCTCCACCTTATGCGTCCACTCCAAAGCCTGAATACACCTATCCATCCCCATCGTCCTCCGCCCACAAACCTTACCCCCAACCAGTGCCAGCCTCCTACACCACTGCCTCCACCCCGAGTGGGCCACGCTTCACTGTGCAGGTCAAAACTGCCCAGCCTGTCACTTATTCTCAGAGCGGGAGACAGGCGGAGCAGGCCTacactcctccacctcctcGCCAGCATGCTACTTGCCCTGCCCCACAAGATCGCCCACATTACGCAGAAGTCCCAGGGCAGGGACAGGGCTGGTAccctccaccacctcctccagCCCAGCAGGCCCATGGTGATCCAGCAGCATATAAAGCAGGCTCCGGTGGTGTTCAGGTGCCAAGCAGGGTACAGGGACCACCAGGAAAGAAAGGACAAGAGCAGAGCTACCAGGCTAGTAAGGGAACAGTGCCAAGACCAGAGGAGGAGTTGGATCGTCTCACAAAGAAGTTGGTGTATGACATGAATCATCCCCCCACAGAGGAATACTTTGgCCGGTGTGCCAGGTGTGGAGACAACGTGCTCGGTGATGGGAGTGGCTGTATTGCTATGGAGCAGGTGTTCCATGTGGAGTGTTTCACATGTATCACTTGCCATGCCCAACTCAGAGGCAAGCCTTTCTATGCACTGGACAAAAAGAGCTACTGTGAGAGCTGTTACATTAGCACATTGGAGCGCTGCTCAAAGTGTTCGAAACCAATCCTGGACAGGATCCTACGGGCAATGGGGAAGGCATATCACCCACGTTGCTTCACCTGCGTAGTCTGTGGCTGCTGCCTCGACGGTGTTCCCTTCACCGTGGATGCCACTTCACAGATTCACTGCATTGAGGACTTCCACAGGAAGTTTGCCCCAAGATGCTCTGTGTGTGGGGAACCCATAATGCCTGAGCCAGGTCAGGAGGAGACAGTGAGAATTGTGGCTCTGGATCGCAGTTTCCATGTCAACTGCTACATTTGTGAGGAGTGTGGTTTGCTCCTCTCGTCTGAAGGAGAGGGTCGAGGTTGCTACCCTCTGGACGGTCACATTTTGTGCAAGAGCTGCAGTGCCCGACGAATCCAGGATCTCTCTGCCAAAATCTCCACTGACTGCTAACAACAACCTTCTGTTCTCTTTCActgctttttgctttttgttttttgttttgtacctTTTGAGGGATATTCAAAGAAGTGCTCACAGTAGGGCCTTTATTTTCCCCCTTTATATTAGCAGACAGCAAGGCAATGAAATAATTTCACATACATTATAGCTGAATTCTACATACTCAGGGTTTATAGTTAAGCAGAGTCGTGAAATAAGAGAGTCTTTTGCATAGGCCACTTTAAGAGGGCAAGTGATATTCCTAACTTTAATGAATAAGATGGTTAGTTTACAGAGGTGATAAGTATTCATTGTGaatagcctgtgtgtgtgtgtgtgtgtgtgtgcgtgcatgcataCATGTATGGTTGTTCATACAAGTTGCTGATTTCTCTGAACAGGTGAAAGGGCAtgatcagggtttttttttttccttactttaTAGCTAAGACTTATGCTGTCACTAAGAATCTGTACTGTAACCAACTGAATTGTATTTGATTacattaaataatcaaaattaaaataacctAACAGAAGTCATGACAGTAATGAGTTGAATTTCACTAAAAATGTCTTGATTGTTCAAGTCCTCTAGTTAAGATCTGTATTTGATGAACCCCTGTTCTACAAACGGCAGGGGTCACATGACAAGTAATTGAGCCTCTGTGCTATAACACTCTAAGACTAACTTCCCGCCTTCTCTGCTGGTCTCTGAAGGAAATGTTGGACATATTAATGAACTAGAACTATTAACACTAGAACTGATCACTGTTATTGAAGGGTATCACCATTCTGTTTAATACCTGAGACTAAATaccatgtttttgtgttttggttcTTTGTCAGGATACAGTTTGCTGATCTGGGACTAGTATTTTTGTACCTAAAACCTCACCTTAACCACCTCATATTAGTGTGACGGTACAGtgtttaaacataattaaatgaagGAAACTGCAATGAGATTTTTATGTAAGATGCTTTAAGAGAGGACAACCCTACTGTATCATGCAGATTGATGTGAATATGAAATAGTATCTTAGTAGTAAAGTTGCTATAAAGGGATTTAGAGCTGTAGTGAAAAAATTTGATTTTGAAGACTTGTAGTTGAAGTGTGTAGTGAGGTAAATGCTAAGATATAAAAGGAAGCAGAAATGAGACTGGTGGTCTACAATTCAGTGCCTCCTTAAAATAAGGTTGCCACTTGCAGCCCTCAGGGCAGGGAGTGTTTAAAAATCATTCTGGACTTAAAGAAAACTTATTCCTAATGGGTGTAGTCTTGTTTAAAAGCACCTAAAACAACAAAGAGCACCTTGCTTACTGAGTAGCTAATGTAGGAATAATTACATCCAGGTAAATGAGCTTTTGGCCTGGTTTGTCCATCTTGGTTGCTGGGgctgttattttgtttaacatGTATATTGCTGATTGTCGGAATGtcatctatgttttttttttttggttactgaaGAGCTTTTAGCTTTTGTGCTCTTTTTGCCGGCagttttttgtataaaaatgcCCTCATTATTGGTTGAGTTTTTCATTTGGCCTCTCTGCtggttaaaataaatgtattgattTTGATTGGATTGACTTGCTTTTTTGATAGTGAAACTTGTGTAATGATTGGAATATCTGCCTTAAATACCTACTGTTTCTGTTCATGAACTTGCGAAATAATTAATGCTAAGACTAATGTCATTATTCACCCCTAACAGAACTAAAAGCACAAAATGTCAGTTGgcaatttctttatttatacaatttCAAGTTGAAGAGTGTTTGAAAGATTATGGCATCATTGActgaattcaattttattttaaaatctttaatctgtttttaaacCATCCACGATATTCAGTATTTGTAACGttcctttttatttctatttttacttATTCTTGGTCTGTATCTTTAATTCTGTGGTTCTGAATATCCAGTAACTTGCccatttgatgtgaacattctCATCCCTCTGCAtatgtttttactttttcctGCCTCACTGTATAACAATATCAGTGCCACCTAAATGCTTAAACCTAAATGTTTTATCAACGCCCACTGATACTAATGAACAAGTGCTCTTCATGCAGCAGAATTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75479 lncRNA upstream 13458 13213977 ~ 13219859 (+) False tmem88b
TU75429 lncRNA upstream 33455 13199007 ~ 13199862 (+) True G63666
TU75461 lncRNA upstream 97457 13135659 ~ 13135860 (+) True G63696
TU75450 lncRNA upstream 113640 13119468 ~ 13119677 (+) True G63685
XR_004577946.1 lncRNA upstream 306330 12922870 ~ 12926987 (+) True LOC117596991
TU75440 lncRNA downstream 16474 13258874 ~ 13266479 (+) True LOC117597082
XR_004578006.1 lncRNA downstream 16991 13259391 ~ 13267034 (+) False LOC117597082
TU75438 lncRNA downstream 34421 13276821 ~ 13277704 (+) False slc16a13
TU75437 lncRNA downstream 42141 13284541 ~ 13285834 (+) False slc16a13
TU75666 lncRNA downstream 145198 13387598 ~ 13387954 (+) True G63889
XM_026936249.2 mRNA upstream 19274 13206657 ~ 13214043 (+) True tmem88b
XM_034303610.1 mRNA upstream 34768 13157448 ~ 13198549 (+) False kdm6ba
XM_034303705.1 mRNA downstream 3585 13245985 ~ 13251814 (+) False mettl3
XM_026935834.2 mRNA downstream 3586 13245986 ~ 13251814 (+) True mettl3
XM_034303431.1 mRNA downstream 33062 13275462 ~ 13285666 (+) False slc16a13
XM_026935968.2 mRNA downstream 33412 13275812 ~ 13285666 (+) False slc16a13
XM_026935969.2 mRNA downstream 33412 13275812 ~ 13285666 (+) False slc16a13
TU74787 other upstream 938194 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_003403980.2 other upstream 1536022 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU73719 other upstream 2569910 10657357 ~ 10663407 (+) True c4h4orf48
trnak-cuu_21 other upstream 2667593 10565653 ~ 10565724 (+) True trnak-cuu_21
trnak-cuu_20 other upstream 2701789 10531456 ~ 10531528 (+) True trnak-cuu_20
TU75687 other downstream 175977 13418377 ~ 13418696 (+) True G63903
TU75730 other downstream 228369 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 316223 13558623 ~ 13562266 (+) True cited1
XR_004577999.1 other downstream 463176 13705576 ~ 13719454 (+) False gc2
XR_004578085.1 other downstream 1013344 14255744 ~ 14269340 (+) False brms1

Expression Profile