RNA id: XM_026936259.2


Basic Information

Item Value
RNA id XM_026936259.2
length 6771
RNA type mRNA
GC content 0.45
exon number 8
gene id nhsl2
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13573634 ~ 13645984 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTCCGAACGTGCACACACGGAGCAGcaacctctctctcacacacaaacacacacatacgtgctgcctgtcagtctctgtCAGTTCGCTGGGGTTTGAGCTTGGGATGAGGTGATGTTTTGGGACAGGAAACACGGGACCATGGGCAATTCCCAACGTCGGGCCAAAGGGAGGCACAAAATTAAAGGGGCAAcagccACCACCAACTTGGACTCGGAGAGCAAGCGAACGGCCCACTTCCAATCGTCATGGCAACagcatgtgaatgtgtttggCTCATGGAGTAGGCCGGAGTGTGTGCAGGAGCTGCACCAAGAGGCTCAGCTCAACCTCCAGAGCCTGCTGCAAGACTTTGAGGAGCAGCTGTATGATAACAGGGTAACTGGGCAGACATTCCGGCACCCTTCCTCTCAGAGCTCAGAGGACACCTCCACTACGCTCAGCCGCTCGCCTTCCTCAATCAACAGCAAGAAACCAGAGTTTGTCTTCCTGCCTGCAAATAAACAGGTGTGTGAGGATGAGACAACCTCATTAGGGATCCGGGCTCAGGACCCGGCCGCTTGTAGCTCGGACCGCTCCCTCCTGGGCTGGAACTCTTCTGTGGGGCCCCCAGTTGCTGAAAAACCTCGGTGGCACCTGAGTCGACACTCCTCTGCACACCTCGTCCCTATCGATGTCACAGGCCAGAGCTTTGATAAGCACGCCAGCGAACTCCAGGCCCCCTTTAGAACTGAAAAGGCGGTTAACCCAAAGACCATCCGCCGCCCAAGGAGTGTGATCGCAGGCCCTGATGTCACGCTGCACTGCCAAGGTGATGGCAAGATTCTTGCTGTTGATCTGATACAAGGTGCCTGTTCTCCTGACTCTTCCCAGCCGAGATCTCTGGAACCCACCACAGAGAATACAGGCGAGCAGCACATACCTTTACGGAAAACtcagagtgacagagagcaCAGTGTCCCCGCATCCCCCAAAGCCTCCACAGGCATGATGGACCATGCCACTCTTATGTGCCCCAGCTCTTCCTGGAATGGCCCAAAGGGTTCCACCTTCTCTCCCTCCTGGAATGACTCCTACAACTATGCCCTATCCCCAAACCCTGTTGCCAAGCAGCCTTTGTCCAAACCTGGAACATTAGACTCTGGTGGAGGTGGCCTCATGTGCCCGTCCCAAACCAGCTCTGCCATGTCCATGAGTTCTGTATCACACTCTAGCTCCTTTACTTTCATCTCAGAACCTTCTGGGCACATGACATATGCAGTCACACATGGAAATGCAATTAAGGGAAAAAGAAATGAGACTGAGGGTGCAGCATCCAGTCCAGCTGCCGGTAATGGCCTCAATAAATGTGAGCAAGAGAAGAGATCAACACGAGCCAATGCTTTCAAGTTCCGTGAACGCTCCCTTTCAACACCAACAGATTCTGGATCTCTCTGCTCAACAGACAACATGTGCTGTCCAGGGGAGACAGTGCCTATAGTCCGAGAAGGTGAGAGCTATGCCTTGCTGTACCCTAGCAACAGCTCTGAGGACAACACCAGCACTGACAATGTGTCTGTAGCAACAGGGTCTGACTTCTTCCCAATGAGTAGACTGAGGTCACGATCACGAAGCATCTCACTGAAGAAGCCCAAAAAGAAGCCACCACCTCCAGTACGCAGCGTGTCCCTAGTAAAGAACTTGTCAGCAATTGGTGGGATGGGCCCACACCATGGTGAAGGACATATCAGAGATGGTAGGCCTAAGAGCCTCTTCATACCACGTGATCATAATTTCCAGGATTCATTCCAGCCCGAGTTTCTTATGGCATCTAAACCAGATGAGGAGACACACAGCAGTTTAGAGACAGCCTCTGATACATCTCAGCCCCCTGACAGAGAAGCTGACCTAGCCTTCCCCCCTCACTGGCAGCTCAGTGAGTGGAAGTCCAACAATGACCCTTATCGTTCATTATCAGGCTCCAGCACTGCTACAGGTACAACAGTAATTGAATGCATTAAGGTGCGTGGAAGCTCAGAATCCCTGAATTCACCATCAAACTCTCGTGCTACTTCTCCTTCCCCACTTTCCATTGAAGCAGAGACTAAGGTCTCTCCATTCAAGCCTCCATGTCTTATGTCCCCCTCAAGTGGATACTCTAGTCAGTCTGAGACTCCCACCCCAACTATTACAAACTCTGCCATCACTGGACTCACCCCAACAGGGTGCAAGATGCGCCCAAAGATCCCAGAGAGGAAGTCCTCACTTCCAGCCACCTCGCCAAAAGACAAATCTCAGTCTCGTCTCTCTTTTGAGTTACCTGTGAATTCCCCAATAGACTTGTCGGCTGTCAAACCCAAACCTAAAGCTAGCCGGAGGCACTCAGACACATCTACCACCAGCAAACCAGGAAAATTGAGTCAGTCATCACAGCCCATGGTTACCACAACAGATCTGCGAAACATCAGACTCCGCTCAGTAAGCCGCTCAGAACTTGAGGACAGTCCTGATGGCTCCTCTGACATCATAGAGGAGGAGCAAGGACGTGATATTAGCCCTCCTACCACCCCATGTAGCTCTAAGCCACCCAAGCCACCAGTTGCAGTAAAGCCACCACTCCCCAAACGACCCATGAACTTGATGCTAAAGTCTCCCTCATCATCGCCTCATACTCAGGAATCTCCACCAGCCTCCCCAGTAGACCGGCCAATGCCTGTAGCCAACATCTACATGGTGGTGAGGAAGCCTAAACCTAAGAGGCCATCCCAATCATCAGTCAGTCCATCTGCAGTTACACCTCAAGAGCAGTTGCCAAGACATCCACCCCCTCTACCTGAGCTTGACCTAGAACATGGGATACCAATTGAGGAGGATTTTACCTTTCCTAGCAGTCCAGAGAAAGAGGACATAGGCAAGACCCTTCGTAGTCAAAGTCCCATTTCCTGCATAACTGAATTGGACAAGAAGAAACCCAAGGTACCACCACCAGTACCCAAAAAGCCAAATGTTCTTCTCTTACCTTCCCCTACTGTTCAGGTGCCAAGCAATGGCATTACAGAAAAGCAAAGCCTCCTACTTGAAAGTGGTTCTCAGTCACCTCTAGGCCCACCACCATCTGAAGCTGAGGAGGCTTCTTATAATGAAGATGACCAAGAAATACCTACTAACCAAGAGATTCTAGGAAGTTGCAATGCACAAGATGAAAATCAAGGACACCTGGAGGTTCTTGGAAATGAAGAAAATCATAATATACCAGAGGATGGCACCCCGAAGGATGTTGGATCTATTCAAGATGTTGACATAAAGGCATTCACTGCAGAAATAATGACAGAAGCTCCAATGGAGGAAAACAGCTCTGTCAAAGACAAGACAGAACTGCATATCACTGAAGAAACAGATGATGATGTGCTTGTCCACACACCTACCACCCATACAACTGAAGACCTTTTCACAATCATACACAGGTCTAAGCGGAAAGTCCTTGGGCGTAAGGAGCCAGCATTTGGCAGTCGTCAGAGCCTTGTGTCACCTGTgaaaagcagcagcagtgacaTTCGAACACTGACACTGGGCAGCACTCCAAGGTCAAACTCTCGGAATGAGAACTTCATGGCTCTTCTCCAGAAGAAGGGCAGCAAGTCAAGCAGTGGAACGCGGGTCTCTGCCATGGAACTGCTGAAGAGCACAAACCCTTTGGCTCGCCGTGTCACTGAGTTTTCTATGTCGGAGCTGGATGCTGCTGGAACTGACCCATCTAAAATGGCTCTACCAGACCAGTGATTCCACTTGTAGAGAACCAAATGTAATGGCTGATTTTCAGTTAAATCTAAATGGTTTTACTTCCCAGGATCTTGCACTGTCTGAAGTGAGGTGCTTTTGAGTTGTTTTGAACCCTGGGTCTCACGTTTTTTTCATGTTGCTGTGGAGTGCTGTCCATATCAAAGGAAAGGAACCCAGTGTTGAAGTGAGGTTCTGAAATAGTTGGGTTAGCATTGTATTTTACCACTGAGAATGTGTTACATTAACTCCTCTGTGGAAATATACAAATGGTATAAAGGCTCACCAGCCTTTGTATATAGTCAAATTTGCCAATGCCCACCTTTAAAATGCAGAATTATTGCAATGCTAGGCAGGACTATATTTGTTTTGTGATTAGGATGGCGTTCACAAAACAAATGTGTTCAAACAACAAGCATGATTGTCCTAGTCAGAAACATtccatataaaaatgtataacaaatTCCCTTAAAAAGCACTTTTTATTACAGAAGTAGTTTAGAGACAAactatttgttatttttgtttgtttatttcgaaaaagatataaaaatccCTGTTTAGCCTTCTGGGATTTATTTCAcccagaataaaacaaaatataaaatatttaagtgTACGTTTAGAATTTTTTGTGACTTTCCTTAAAACTGCCTATTTTTGGCGTGTTTACAACAAACAGGGACTAAAGTCACAAAATGGACAACCTTCATGCAATATTCTTCATCTGACTCTAAATTATAGATCTTCCCTCACTGCCAGTAGTGGTACACAGTTTATAGTAGTGTTGTGTATGTATAGTACatacacaaaatgaaaaaccaaaaccacCACAGAGCAGATTATGAGAACATTaccaaatgaaagaaaataggAGCTGGAaacgaaacaaaacaacacaacaacaacaacaaaaaaaagatcaatgAAGGTTTCAAATCCTCCTAATGGGGTGTTTGATCCTGGCTGTCTAATATGGAGAACCTGTCTGGGGTTTCTTGTTCTGGCTACCGAATGAAGGGTCTGCACTGTTTAACACTCAAGGAACCAAGGAAGGGAGTTGCCAAGGACAGTGAGTGGTAAAGAACTTCTTATTGTCGCCTCCATATCTTTTTGACCAGACCTTTGGGAGATGTGGTGCTGCAGCCTGCTATAATCACCACCAACGAAATTTAAAGCTGCAGCTACAATGTGTTCCTGAACATTTTATCTATGTCCACATTGTATTTGTCACTCACTATATGATCATTTCATACTATGCATCAAGGCTGTATGTGCTGCTTCTGTGCCAGCTAAGGCAAATTAGCAGTGAATGCCTATGAATGTCAGGAAGAGGGAACAAAGCTCAACAGTTTACTTTAGTTTTCTGGGTTTTTTGTATAGTCGCCGCCCATATCACTGCAGAAAAGGAAATTTATTTCTATGTTATAATGCACAGACAGAGACTATCATGAGAAACTGAGACCTGTGTAGGTCTCAACATCTGGTTTGTCTATCAGATGTTtggagacaaaaagagagaatcATTTGGTGAGCAAAGAATTTCCCACAAAGACTACTTGTTCATTCCCattcctttaaaatattttctcccACATGTGACTGTGCTTCTCTGGCtcacaatcagaatcaagaaacCTGGTGCTATTGAGCCAGAGCACCCTCTGCAGTCCAGGAGGGGAAGCACACCTGGCGAAAAATCTGTTCTGACTCTCCTGAACACTGAGGAtgaagattaaataaaaatttttattatatcagtCCTTCAGGTATTCTGATAGCATCTAAGTATAACAAAGAATATGAAGTATTACATTAAAATAGTGAGTGAAGCTTGTTTTCAGTATAtagtgaatgaaaaaaagacaaccAGTGTTTGTTTGCCTTGTACTCTGGCGTCAAGCCTGTGTTTTTAAATGCCTTGGTAATGCACTTCTGTAGAAATATCCAGAGTTTCTTTTAGTCTTTTTATGAATACTACTCTAACGGTCATCATTACTCTTGTGTACTCTGTGCTGCATCCATTCTTAGTCAATAATAGTATCAAAATTTCCAGAGGATAGgcggagagggagagagaaagtcaAAATGCTTAGAGACACAAAGAGTGAagtatatatattaaaaaaaaaaaacagactgttaGAAGCCATGTGTTGAGTCACTGAGAGTTTTCACATAAATCTAAAATCACATAAATCTAAAGACAATGAATGTACATTATGCCACACAGACCAGAAAGATACAGTGACCTACATTATAGTAGATTTCTTTATGTGACAACCTACAGTGAAAACCTGTTCTTGCTTCTGTATTCTTCCTCCTTTCTCCCTCCATCTTAGCCTCTTTCCCATTCGCCTAATGACACCCACAGGAGCTCACTTTTGTACACAGAGGAGAGATGGATCTCAAAAACACCCCAACAAAGTGAGAGCACAGTAAACATTGAGAAATTCAGACCCTACAGGGTCTATTTTCCTAAAAGCATTGTGCTTAGGATCAGCAACTATTGGACAAAGTGTTTAAAGTGACACTCATGCTCTTGTGATTTatcttaaaacatttttggcaATCAGTTTAAGTCAAAACTCTGTCCCCCTCTGTGCCTAAAAAGTTCTGCACGATATGACTTTCAGCCAGTGCCAAATTTGaaaacatacactgtatataacatGTAATTCTAAGATACAACTTTGTCAGATTTTAACACAGAGATGAATATAACAGAAGATTATTAAGGCTATTAAAGATCAGTTTAGAGTTTACTGACTCTCTGAAGAAAAAGCTTTAATTGCCCCTTGTCCTTGGGACAAATACAGTTGggtgggaaagaaagaaagtactgggaattatatttttgttattttatcattGGAAAGACGTATATAAAAATTCTGAATATTATGAGCCTCCCTCTCCAGCAGTAAGGATATGTAGCTGTGAGCTCTTCAAGCAGCTATGTCTTGCCtatgtgctaaaaaaaaattacataaataaattatttttcttgctTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75791 lncRNA upstream 37562 13570002 ~ 13572833 (+) True G63976
TU75739 lncRNA upstream 105676 13504460 ~ 13504719 (+) True G63936
TU75682 lncRNA upstream 142669 13459362 ~ 13467726 (+) True G63898
TU75685 lncRNA upstream 192954 13417221 ~ 13417441 (+) True G63901
TU75666 lncRNA upstream 222441 13387598 ~ 13387954 (+) True G63889
TU75783 lncRNA downstream 49665 13695649 ~ 13748072 (+) False G63973
TU75785 lncRNA downstream 49665 13695649 ~ 13748072 (+) True G63973
TU75843 lncRNA downstream 109560 13755544 ~ 13759751 (+) True G64025
TU75876 lncRNA downstream 257457 13903441 ~ 13909459 (+) True G64049
TU75933 lncRNA downstream 366114 14012098 ~ 14012315 (+) True G64102
XM_026937097.2 mRNA upstream 40796 13564728 ~ 13569599 (+) True rps4x
XM_026936564.2 mRNA upstream 48858 13558623 ~ 13561537 (+) False cited1
XM_026936565.2 mRNA upstream 48858 13559315 ~ 13561537 (+) False cited1
XM_026936560.2 mRNA upstream 56447 13533817 ~ 13553948 (+) True hdac8
XM_026937025.2 mRNA downstream 1197 13647181 ~ 13684599 (+) False arhgap36
XM_026937026.2 mRNA downstream 1198 13647182 ~ 13684154 (+) True arhgap36
XM_026937028.2 mRNA downstream 8971 13654955 ~ 13684598 (+) False arhgap36
XM_026937027.2 mRNA downstream 12062 13658046 ~ 13684597 (+) False arhgap36
XM_026936262.2 mRNA downstream 46793 13692777 ~ 13699690 (+) True rasl11a
XR_003404009.2 other upstream 48129 13558623 ~ 13562266 (+) True cited1
TU75730 other upstream 135358 13470769 ~ 13475037 (+) False LOC113539889
TU75687 other upstream 191699 13418377 ~ 13418696 (+) True G63903
TU74787 other upstream 1315272 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_003403980.2 other upstream 1913100 11644902 ~ 11697295 (+) False si:ch211-200p22.4
XR_004577999.1 other downstream 59592 13705576 ~ 13719454 (+) False gc2
XR_004578085.1 other downstream 609760 14255744 ~ 14269340 (+) False brms1
XR_004578093.1 other downstream 986046 14632030 ~ 14658936 (+) False zgc:194930
XR_003403994.2 other downstream 2377211 16023195 ~ 16039984 (+) False LOC113540079
XR_004578074.1 other downstream 2664229 16310213 ~ 16319166 (+) False LOC113539780

Expression Profile