RNA id: XM_026936263.2


Basic Information

Item Value
RNA id XM_026936263.2
length 2853
RNA type mRNA
GC content 0.44
exon number 5
gene id rasl11a
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13692777 ~ 13699690 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTCATTTACGGGGAACTGTTCTGGTCCAATCTCCTTCTCCAAAGCTGAGGCATTGGCGCCCTGAAAAACACAGCCACAGGGGTTATTATCTCAGGCTCTCACACTCTCGCTCTTGCAGGTTACTACCAGACAGGACTGTCCTGTTAAGATGAACAGGAACATCCTGTTGGGGGAAGGCTCGACATTAACAGGATGCACATCCACTGGGAAACACTTGTTTAGCTCTAACAGAACACCTGCAAGCAGCACAGCAGCTCAAGAGTCCAGTCCGGATGTTTCTGAGTTCCGGATGTGTCAGAGTGTTTCAGAGCAGTGTGCTTTGTCATGGGTGTCATCCGCCCCACTGCTCTCACGGCTCTGAGCTCAGCTCTCTCAGCTCTACTCTCTCAGCTCTACTCTCTCTGAGCTCTGCTCGCTTCGTGGAGAGGCTTTAAATGCAGGGGGATCCACACACGTAAACCCACCGCTGCACTGAGGAGACACACATTCAGCTTGTGATCACAAGATCCGGTTCTTTAGCTGTACGGATTACTGACATCACCAGTATTTGAGGAACAGACCCGGAGGAATAAAAGCGGCGAGGAAGCGCGAGCGGGAGTCgggagtgtggagtgtgtaccCCTGGACTGTCTCTCATTCAGAGGATTTGCCTTCATGAGGGCACAGTCATCGGCACTCGCATTATGAGAAAGACTTTGCAGAGTTTGGAGAACTGGGACAGGACTGTTTGGAAAAGTCTAGGATCTGCTATGAATTCGCAGGCACTCGGATGAAGTCGCCAGCTCTCTAAATGCGTCTTCCCGAGCAGCCGAGAACAATGAGCACCGGCTCTGGCAACTTTCTGCTAGTCCCCATACCAGAGTACCCAAGCCTGGACTGTGTGCCtaacaaaaatgtgaaaatagtCGTGCTTGGAGCTAGCAACGTCGGGAAAACAGCCTTAATAGTACGATTTCTGACCAAGAGGTTTATCGGTGATTACGAAGCCAACACAGGGGCCTTGTATTCAAGAAAGATAAATCTTGATGGGGAGCAGGTTTCTCTACAAGTGCAGGACACTCCCTGTGTCTCACTGCAGgATGACGTAGAGGGCCTGTACTGCCAGGAACAGATTAACCGCTCCATCTACTGGGCAGATGGCTACGTGCTGGTCTTTTCCATCACGGACATGCACAGCTACCGGACCATTCAACCGCTCTATGAGCATGTGCGTCGCATCCATCCAAGCGGCAACATCCCCATCATCCTTGTAGGCAACAAGAGCGACTTGCTGCGGGCACGCCAGGTACCTACAGACGAGGGCCAGGCCCTGGCAACCGATCTCGGAGGACAATATTTTGAGGCTTCTGCCCGGGAGAACCATGAGGGTGTGCAGGCAGCATTCTTGCACTTGTGCCAGGAGGTGAGCCGGGCACTGGGAGGGGTGAATGGTGAGAAGAGGAGGGGAGGACTGCACCTTGCTCGGCCGAAGAGTCCCAACATGCAGGAGCTGAAGAGAAGATTCCGGCAAGTGCTCTCTTCTAGAGGGAAATCAACAACTGCAGTGTGATGATAATGTAACGCCAGTGATTGATTCACAGGCCTGTTAGTGGAATCAGTATTGGCTGAGGAGTCAAAAGGTCAACCTTAATATGTATGCtaactttattttacactgcAGCATTGACTAGGGGAACAATAAACGTGTTGATTTTCATACAAAGACAACCTTTGCCTGGAAGAACACTAATATGTAGAATGATTTGATAATGATTTGTTATGATATACCATTACTGATGtatcataataatatattagtGGTAAATAAAGATACAAAGTTTCTTATATCTTTTTTGACAAATTGTGATTTTAGCCCATAACATTGTTACAGATGTTTCAAAAATACAGTGATAATGTGTGATGAATTGTGATGGCTAAGGAAATGGCCTGGGCTTGGTTTTTCATTATTGCTGTATGTAAGCTTTTAGACAAGTAGAGCTCTTAAACACCCTTAgatggaaaaatatttttgtactggGAATAACTGCTCATGAATTAGAGCAATTATTTTTGGTTATTTCTAAGTTATTTCTAAGTTACCCTGTCTGGCTGATATCCATATATAGGAAGGAGGACACGCATCTGGTGGTTCTCATGAACTTTAACCCACTCAGGCTGTGTGAAGCCAAAGCAGAGGTTGGgtgaatatttcatatttcattcactcattcctTTATTTATCCTTCCCAATTTGTAAGGGGGATTACAGCCTGAAGCTGCTTTCCTGTAAAGAAAATTCTGGAATGTGATATTCATTCACCGCAAACAGCCTTTGACCCCTAATCTTGTTCCTTTGAACTTTGACCTTGATTTTCCTGTTCTGATCAGAAGCAGATTTCATTGCAGTGTGTCTCGCTTTTCTGTCTGATACCTGttgtaaacaaagaaaatgttgtGTAAGTAAAAGTGACATTTTgatacattttgtattttaatttcttttccttaTTACAAAATTCCTTTGCATAATTGGAAACACACACCCTTGCACAGGCAATTCTTTCCcaattatagatttttttgcTGTTCACATTATATGAAGGCCTGTATGTAAACAGAACAGGGTTATAGAGGATTCCCTAATCATTTCCACATTTAAAAGATATTATGAGACTTAGGCTTTTCCTGCCCctgtatgtagtgttttttGCTCTGTGGGCTGTCTACTGGCACttagctgaaaaagaaaagcttcatttttattttcaaagttTTGACTGATTCTGGCTTACACTATGTGTATTATATGAAACATTCATAATCATGGCCCtcaaattaccaaaaaaaaaaaaaatcttttttgagGTCTGCAA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0045943 positive regulation of transcription by RNA polymerase I biological_process
GO:0016020 membrane cellular_component
GO:0005730 nucleolus cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75791 lncRNA upstream 119944 13570002 ~ 13572833 (+) True G63976
TU75739 lncRNA upstream 188058 13504460 ~ 13504719 (+) True G63936
TU75682 lncRNA upstream 225051 13459362 ~ 13467726 (+) True G63898
TU75685 lncRNA upstream 275336 13417221 ~ 13417441 (+) True G63901
TU75666 lncRNA upstream 304823 13387598 ~ 13387954 (+) True G63889
TU75843 lncRNA downstream 55854 13755544 ~ 13759751 (+) True G64025
TU75876 lncRNA downstream 203751 13903441 ~ 13909459 (+) True G64049
TU75933 lncRNA downstream 312408 14012098 ~ 14012315 (+) True G64102
TU75934 lncRNA downstream 313529 14013219 ~ 14013418 (+) True G64103
TU75936 lncRNA downstream 317596 14017286 ~ 14017669 (+) True G64105
XM_026937025.2 mRNA upstream 8178 13647181 ~ 13684599 (+) False arhgap36
XM_026937028.2 mRNA upstream 8179 13654955 ~ 13684598 (+) False arhgap36
XM_026937027.2 mRNA upstream 8180 13658046 ~ 13684597 (+) False arhgap36
XM_026937026.2 mRNA upstream 8623 13647182 ~ 13684154 (+) True arhgap36
XM_026936257.2 mRNA upstream 46793 13573635 ~ 13645984 (+) False nhsl2
XM_034303628.1 mRNA downstream 5727 13705417 ~ 13719454 (+) True gc2
XM_034303627.1 mRNA downstream 5886 13705576 ~ 13719454 (+) False gc2
XM_034303629.1 mRNA downstream 5886 13705576 ~ 13719454 (+) False gc2
XM_026936929.2 mRNA downstream 5886 13705576 ~ 13717895 (+) False gc2
XM_026936675.2 mRNA downstream 24624 13724314 ~ 13738910 (+) True LOC113540276
XR_003404009.2 other upstream 130511 13558623 ~ 13562266 (+) True cited1
TU75730 other upstream 217740 13470769 ~ 13475037 (+) False LOC113539889
TU75687 other upstream 274081 13418377 ~ 13418696 (+) True G63903
TU74787 other upstream 1397654 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_003403980.2 other upstream 1995482 11644902 ~ 11697295 (+) False si:ch211-200p22.4
XR_004577999.1 other downstream 5886 13705576 ~ 13719454 (+) False gc2
XR_004578085.1 other downstream 556054 14255744 ~ 14269340 (+) False brms1
XR_004578093.1 other downstream 932340 14632030 ~ 14658936 (+) False zgc:194930
XR_003403994.2 other downstream 2323505 16023195 ~ 16039984 (+) False LOC113540079
XR_004578074.1 other downstream 2610523 16310213 ~ 16319166 (+) False LOC113539780

Expression Profile