RNA id: XR_003403994.2


Basic Information

Item Value
RNA id XR_003403994.2
length 5405
RNA type misc_RNA
GC content 0.46
exon number 19
gene id LOC113540079
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16023194 ~ 16039984 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

attttctttacagcacTTTGCCACTCACTGAGGCAGCTTTATATAATCCCGAATCAGAcatatttctttgtttcatgtgtgtatatgacTCTTAACGGGacagtaaagtgtaaagtgtaaagtatcCTCTAGTTTCGAGTTGCGCTTTTATCTGAGGATCCCGGAGCAGCGCGCGTGACCTGGGCTCCGTCCCAAACAGCACACTAATATAACTGTAAGTGGTAGCCTACTATTTCGACATACGGTTTGGGGCATAGCCCGTGTCACACGGCTATTTACCAGAGCACTTAGGATTCGTACTATTTAGCAAGGTAGGTAGGATGATGGTTTGGACGCAGCCACAGTCACACGGCTCTCCGCGTAAAGGCGGTGTTCTGTTTTGATATATAATTTCATCagtagtgtgtgatttgggacgtAGCCAGTCGCAGGGGGCTTTGATGAAGGCTACTTTGATGTTGATTATGGATCAGCAAAACACGGCGAGTTTCAGGGTGAAATCCGGCTCCCAAAGATTTGAAGAGTACCGCCAGGAGTTGTATGTGGAGTACTCCAGCAATGATGTGGATAATAAAGACACTTCTAAAACCGTGGACATGGAACATAAGCCGTTAAGAGCAACAGGGAGTATAAAAGGGacctcagcagtttctgaagacAAGATCCCCACAGTGTTGGCTCTTCAGCTGGCTATAGCAGAAGGTCCAGACCGGCTTCCTGCTGACAAGGACACACAGGAAGTTCTGTGCGGGAAGCTGCGTGTACTGGAGACTGACCTCAGCAATATTTCATCCTTGATCTCTGAATTCTCTGCTCATCTGGTGTCCATCAACAGTGAGGAAAGAACCATATTTATCacttttaaatcatttgaagAAATATGGAAGTTCAGCACATACCACAGAATGGGTTTCCTGCGTCAGTGTTTGGGGAACCTTCTTTTGGACCAAGAATTCTGGCTTAATGCTTTAGACCAGGAGGACTCAGGAATTGAGGTCTCAATTAAAGAGGAGGTTCTTAATCAGATGTACAAAGGCTTTCTGATGCAAGAAGGCTCATTTTTTGGGAGTTGCACAGTGAATCAGATGTTTGACAGCTGCACATCAGGCAGTGATCTTTATCTTGAGAAGGGCGATATTGCTCTGTTTGAGCCTCCATTCCTGGGCTCGGGTTGGACTGTGCTATCCTTGGCAGATGGATCAAGAGGGACTAAAGCACAGCCAGCCCTGGAACCTGTCATTCCATTTCATGAGTGGTTTCTAAAGTCCTGTCCTGAGTGGGTTTTGGTAggcagtggaaaaaaatgctGTGATCTCCCGTATCAAATTGCTGTAGGTATCTGTGAGGCTACAGAGGTGTATGATGGTAATGGACCCGATGAGCTCAGCTTTGAGGCTGGTGATCGCATCATCATCGAGGGCCTGCTGGTGACCTGTTTTGAGTGGTTCATGGGCAAGCTGGAGAGGACTGGTGATATGGGACTTGTCAAAACCAGCCTTGTAAAAGAAACCGATTCTCTTTGTGAATCTAATGAAATCTTTATGAAACAAGAAGACAGAAAAATCTTCAACTTGGAACAAGAGACGATTAAAAAGGAAGCTAttgcttttttaaagaaaacctgCCAAAGCAATGTTGCTACAGTCTACAAACTTGATTCAGCAAGTCCAAGATCAATTCAAAATGGACCCACCAACAGTGAACATGTATGCATGAAAAGAAATATTGCCAATATTTTGAATGAAATAAGGGAACCTCTTCAGAATgagcagacacagacacaagaCAGTGTGAAGCTCCAAACCGACGAGCCCACAGGATCCACAGAGTCACCGCAAGAAATCCCACACTTTACTGTATGTTCAGAGCAGGATGGTCCCAATCCAGATGGATACCATTCCCTCCTGTCCTTCCTAGGCAGCCGTGATCACCGGCCTGAGTTTCAGCCTCTCTATGCTGCCTACCCAGAATTCCTCCTGTTGCATTTCCAGGGCCACAGCGATGAGGAGGAGCTGGTAGCGTATTTAGGTGTTGCTCGGGAAGCTGCAAGAAAAAAGCGGATGTCATGGGCACAGAGCAGAATCTGTTTCCTCTTGGGACAGCTGTGTGCGGGAAGGTCAAAGTTCTCCCAGGCACGCGTCTATTATGAAGAAGCCTTAAGCGTACCCAGAGACTATTTCACAGACATGTACCTTCTCTCAGCTATCTACTCTAACCTGGCCCTCATCTATctcacacaaaaaaatgcagagaaGTATCTTGCTCTATCTGAACGTTTTGCTGCTTTATTGATGGCAGTCTGTGACTATTTATCTGGCACAGAAGACCCAGAGGTGTTGAAGTTTGCATTGAAAAAGGCAGTTCTGTCCCAGAACAAACCTGCAGAAGCCAGGGTCTGCTTCCTGCTAGCCAAGTTTTATCTGAAGCTTGGAGAAGGGACGAATGCAGTGCCTTTCATTGAACGGCTACAGATTTTGGCTGATGAGATGCCTGGAGCTTGTGACAAGTTGCGGAGTCATGGTTTTTTACTGTTAGCAAGGCTTTATAGTGACTATGGTCTTCTTCATCTAGCTGAAAGCTCAGCATGGCAAGCATGTCTGCAGGTGTCTTCCTCAGTCACTGATTGTTTCTGCAGCGTCTCTTTGCTGTTAGAGAATGGCCGAGAACTGTATGGTGTGGACATCCCAGCACAAGTGGCTCCATGTTTGACTCGAGCTGCTGCTATGGAATCTGCTGACATGGAGCCCAGCCTTTCACATGCCTATGCCCTGTGTCTGTCTTGGCTTTTCCACAAGCATGGCATGCCTAAAAGGGCAATTCAGTACATGTGTAGCTTCCTCAACCATTCCTCTGCTACCACACTGAGCCGTTCTGATGCCAGTGCTGCTCTTATCTGGCTAGCGTGGTTATATATCTGTGACTTGCAGCACCACAGTGCTCTGGATGTGCTGGACTCAGTCCTGTCCTCCCTCCCCGAGCACCGCACAACCCAGCTGGAGGGTGTCATCTATAATATGCGTGGCATCACTTTGAGACATGCTGGTGATGTAAAACAAGCTGCAGAGAACTTCCATGCTGCGGTTGATGTCTGTGAGGAGTTTGAAGATAAGCACAACTGGGCCACAGCACTGGCCAACTTTGGCTTCTTGAGTCTGCAGGTCAATGCGAAGAGGGTAGCGGAGGAGCAGCTCACCCAGGCAGTAGAGCTGTTCTCTGAGCTAGAGGATAAAGATCTAGAGATAAAGCTGAACTTTGTTGTTGTGCTTCTGGAGCTTGGGAAGCTTTATGTCTCACAGGGTTTTTATGAGAAAGGAAAGGTCTGCTATGAGTGGGCCCTGCTGATTTCCATCGTCTATGATAACTCAGAGCGCCAACTGCAAGCCACCCGTCACCTGTGCCAGCTGTATAGTGAAGCATGTCCTGATGAAGTTCAGTGTATCATCTATAATGAACACCAGCTGAACCTGCTGCACCAGACAGGAGACAGAACCCTGGAGGCAGAGATATTGGAGAAGATCAGCCAGCTGTACCTCAGCCTGGGCACCAAAAAAGCAAATAGATATGCTCTGGACTACACCAAAAGAAGTATAGGGATCTACATCGACATggggaggaagaggaaagaGGCTCACGGCTGGCTCCAGGCAGGAAAAATCTACCACATCCTCAAACAGACTGAGCTGGTGGATCTCTATGTGCAGGTAGCGCAAGACATTGCTTTAAGCACAGGAGACACACTATTCATTCTGGAGCTGCTGGAGGCCGCAGGGGACGCATTCTTTAACAGCACACTGGACAGAGAGAAAGCTGTCTGCTTCTACAGGGACCGAGCCCTCCCGATTGCAGTGAAATCAAGCAGTGTGCGTTGTCAGCTCAGATTGTGCAATAAGCTAGCAGAGTTGCTGCTACAGCTGGGACAGTATGGAGAAGCTCTGGAGTATGCGCAGACTGCATTAGAGATCAGCGTCAGTCTGGCTGACCGTTTGAACGAGCGTGTGGCGTTCCATCGTCTGGCTACGCTCTACCACTGCCTGAGTCAGTTTGAGCTTGCTGAGCACCACTTCCTAAAGGCCCTCTCGCTCTGTCCCTCGCCCTTGCAGTTTGATGAGGAAGCCCTGTACTATGTCAAGGTCTATCAGACACTAGGTGACATTACCTTCTATGATCTAAAGgATCCATTTGATGCAGCAGGTTATTACCACCTCGCCCTGGCAGCTGCCATGGACCTGGGCAATAAGAAGTCTCAGCTTGAGCTGTGCACTCGCCTGGCCACAGTCTACCACAACTTCCTCATGGATCGTGAGCTCTCCCTGCACTTCTACCAACGTGCCCGAGCCTTCGCTGCTGATCTTAATATCCGCCGCATCAACCTATCACCAAATCAGAGTTTCCGCACCACATCCCAATACAGAATCACAGCCTTGCAGGAGACAACCTAGACAGTCAAAGTgtactgagaaaacagaaaccTAAACTGCACTGAAGCACACCACTGTAATTTTTACAGACCAGATGCTTTGTGTAGTGGTTCATTTGCTTTCATTTGTGTTGACTGGCTTGCTGATATTTGAGGTCAGAAAACCTGACTGATTCAACATTTGCCCTCATCTGATTACTCGTGTTGCTCCAGCAGTCAGATTTAGCAAGAGTGTCAACTAAAGGACAAAATatCTCTTTGCCTGTAATggatccagggtgtattcctgcttcatttccagtattcctgggatggGCGCCAGACTCACTTCAACCTTGAACAGGATAAAGCGATTACTGAAAAATACCACATCCACAAatagatggaaagaaagaataaaccAATGAATATTAATAGAAACTAGATAATTAAAGGCAAGCCTTTAAATTTAAGTGTAACCTACATATGACTGGAGTAATATGCTCTGGTTAACATACATCTGGTTCTGACCTTTAAATGATAACACAGTTTTACAGATGGTACTTATGTAACACCCAAATGAAAGACCAGCATCAAGAGCAACTCCTAGGACCTTAGGAGTAGTTTGGAACATTttgtttgcacaaaaaaaaaaaacccatatgAAAACAAACACCATCTTTGTTTCTAGCAGACTTAGTATCAAATGTAAATCCTTACATTttaacagtatttaaaaaactcattataaacctttaaataaaaaaggttcGAAATGGACATTCAACTCTTCATATAATGTCAGAAAATCATGCACAGCTGctaaatattgttaaataattaatgtaGACTCCCTATCCTAAGTTGTCCTGCAGAATTACATGATTTTAAGCAATGGTTTAACTCCTGGAATCAAGTGAAAACAAAGAGATGCTCTGTTTTCACTAAGTGCTGAAAATGACTAGTGTTACggtttcaaataaatattttcatggcTGGTGTGATCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77137 lncRNA upstream 21734 16001155 ~ 16001461 (+) True G65170
TU77079 lncRNA upstream 152424 15869198 ~ 15870771 (+) True G65115
XR_004578089.1 lncRNA upstream 466271 15506292 ~ 15556924 (+) True LOC117597190
TU76906 lncRNA upstream 821667 15201309 ~ 15201528 (+) True G64963
XR_004578083.1 lncRNA upstream 1011702 14977326 ~ 15011493 (+) True LOC117597182
TU77172 lncRNA downstream 22104 16062088 ~ 16063461 (+) True G65199
TU77337 lncRNA downstream 183434 16223418 ~ 16231115 (+) True G65335
TU77409 lncRNA downstream 352145 16392129 ~ 16392363 (+) True G65382
TU77422 lncRNA downstream 390477 16430461 ~ 16430686 (+) True G65395
TU77544 lncRNA downstream 391961 16431945 ~ 16442900 (+) True G65495
XM_026936548.2 mRNA upstream 22250 15992175 ~ 16000945 (+) True plaa
XM_026936099.2 mRNA upstream 106274 15904355 ~ 15916921 (+) False cckar
XM_034304111.1 mRNA upstream 106274 15909508 ~ 15916921 (+) True cckar
XM_026936678.2 mRNA upstream 1054594 14889300 ~ 14968601 (+) True zmp:0000000660
XM_026937085.2 mRNA upstream 1193284 14824102 ~ 14829911 (+) True paqr9
XM_026936291.2 mRNA downstream 221 16040205 ~ 16050628 (+) True htra3b
XM_026936832.2 mRNA downstream 45693 16085677 ~ 16092460 (+) True ttc5
XM_026936829.2 mRNA downstream 58899 16098883 ~ 16107737 (+) True si:ch211-212k18.5
XM_026936826.2 mRNA downstream 58984 16098968 ~ 16107737 (+) False si:ch211-212k18.5
XM_034303659.1 mRNA downstream 68992 16108976 ~ 16118843 (+) False slc7a7
XR_004578093.1 other upstream 1364259 14632030 ~ 14658936 (+) False zgc:194930
XR_004578085.1 other upstream 1753855 14255744 ~ 14269340 (+) False brms1
XR_004577999.1 other upstream 2303741 13705576 ~ 13719454 (+) False gc2
XR_003404009.2 other upstream 2460929 13558623 ~ 13562266 (+) True cited1
TU75730 other upstream 2548158 13470769 ~ 13475037 (+) False LOC113539889
XR_004578074.1 other downstream 270229 16310213 ~ 16319166 (+) False LOC113539780
XR_003404046.2 other downstream 327972 16367956 ~ 16370684 (+) False LOC113540582
XR_003404110.1 other downstream 720535 16760519 ~ 16760583 (+) True LOC113540740
XR_003404111.1 other downstream 720765 16760749 ~ 16760819 (+) True LOC113540741
XR_003404115.1 other downstream 720997 16760981 ~ 16761107 (+) True LOC113540745

Expression Profile