RNA id: XM_026936293.2


Basic Information

Item Value
RNA id XM_026936293.2
length 1153
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC113540081
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16028179 ~ 16030916 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAAcaattcttgttttatttttctttcagcagGGATGTATTCATTCTTAGCTTATTCTTAGCTTATTTCAGTCTTAGACAATGCGCATGCGCATCAGATTCTTTTACCTGCTCTACTCAGGATCAGAGGTTGAAACACAGcgCAAGTTTTAGGTCAACAGCTTGTGTGCATGATACAGAGGAGGTAACAGGGATGTCCTCGAAAAGGTCAAAGAACGGCAGGGATTCACCAGCTGAACCCAAAGTGCCACTTCGCCGCTGGGAAGAGGAGCAAGatGATGATTACTGTGACCCTGACAAACTGCTTCTTTGCCCTTATGACACTAATCATAAAATCCGGGCATGTCGCTTTCCCTACCATCTCATCAAGTGCAAGAAGAACAATCCTCTGCTGGCCAGTCAACTGTGGACGTGCCCGTTTAATGCTCGTCACCTTATGCCCAAACACGAGCTGTCCCATCACATGTCTACCTGCGTGGATAGGTGCTCTGTCAATACTGACTATGCGGTAACTGATGAGACCCAGCGTAAATTTCAGGTTCCTGTAAGCACCTGGACTATTCCTGTGTGCGATGAAGACTGGGACCAAGAGGAGGAAGAGTCAGGAACACCAGCAACACCATTTGTCTGGGGAGTTTCAACCTCACCATTCAGCCAAGACCGGGTATTTATTCTCAGGCCTGAGCCAGCTATGACCCACAGTTTGACCCCCGGTGTCAGAGCCCCAAGAGTTCTTCCCTGGAAACTGGGCATGTAACTGGGAAGTTCGATTCTGCAATGTGCTACACGGATTTGCAGCTCCTAACTGATGCTTCTTTATTATTACTGGTTTCAGACATTTGCATTAAGTTAATATCTTGCTGTTTATCTATTAATAAATAGGTGTTGATAAAGCACATTGGTTTGGTTAATGCCACGCTATAAGAATCCTGTTTAGAAGGAGAAATTACTTTCAGAATGTGTAAAGTGGCATAATAAAGTTGAACCCTACTCAGTTAGGTAGGTTTAGTTCTTTACTTAGTTGTGCTTGGGAGGATTTGTGCAGAAAATAAGAAAAGTTGACATCTAGGGCGCTGCTATGGCCTTCTTTTGTATTTGCATgttccattattattaattacctATTTGTTTTCAAATAAAACCTTTACGATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77227 lncRNA downstream 36663 15989549 ~ 15991516 (-) True smim20
TU77256 lncRNA downstream 45906 15981736 ~ 15982273 (-) True G65267
TU77240 lncRNA downstream 67812 15906094 ~ 15960367 (-) True G65253
TU77249 lncRNA downstream 103018 15924454 ~ 15925161 (-) True G65260
TU76907 lncRNA downstream 826634 15201298 ~ 15201545 (-) True G64964
XR_003404045.2 lncRNA upstream 162176 16193092 ~ 16196596 (-) True LOC113540579
TU77434 lncRNA upstream 162176 16193092 ~ 16196466 (-) False LOC113540579
TU77449 lncRNA upstream 225035 16255951 ~ 16260298 (-) True G65416
TU77455 lncRNA upstream 232009 16262925 ~ 16264165 (-) True G65422
TU77456 lncRNA upstream 236320 16267236 ~ 16267546 (-) True G65423
XM_026936547.2 mRNA downstream 10287 16002159 ~ 16017892 (-) False tdrd7b
XM_026936544.2 mRNA downstream 10287 16002159 ~ 16017892 (-) False tdrd7b
XM_026936545.2 mRNA downstream 10287 16002159 ~ 16017892 (-) False tdrd7b
XM_026936543.2 mRNA downstream 10287 16002159 ~ 16017892 (-) True tdrd7b
XM_034303605.1 mRNA downstream 15503 16002159 ~ 16012676 (-) False tdrd7b
XM_026937123.2 mRNA upstream 23612 16054528 ~ 16071692 (-) True acox3
XM_026937226.2 mRNA upstream 42871 16073787 ~ 16085506 (-) True man2b2
XM_026936834.2 mRNA upstream 62007 16092923 ~ 16098115 (-) False LOC113540382
XM_026936835.2 mRNA upstream 62007 16092923 ~ 16098058 (-) True LOC113540382
XM_026936353.2 mRNA upstream 89466 16120382 ~ 16125010 (-) True oxa1l
XR_004577994.1 other downstream 36294 15973579 ~ 15991885 (-) False smim20
XR_004578098.1 other downstream 123824 15879471 ~ 15904355 (-) False tbc1d19
trnap-ugg_2 other downstream 152281 15875827 ~ 15875898 (-) True trnap-ugg_2
trnae-cuc_13 other downstream 1293452 14734656 ~ 14734727 (-) True trnae-cuc_13
TU76338 other downstream 1784498 14232809 ~ 14243681 (-) True G64436
XR_003404041.2 other upstream 24106 16055022 ~ 16071692 (-) False acox3
TU77497 other upstream 388394 16419310 ~ 16423164 (-) True tnfsf12
TU77801 other upstream 573192 16604108 ~ 16605717 (-) False bmp15
TU78232 other upstream 1369678 17400594 ~ 17402464 (-) True G66053
TU78241 other upstream 1408577 17439493 ~ 17444174 (-) False rnaseka

Expression Profile