RNA id: XM_026936307.2


Basic Information

Item Value
RNA id XM_026936307.2
length 2737
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC113540087
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 9314849 ~ 9327431 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAGCTTTTCAAAAGTAACATCCTTGCCAGCTGCAGCAAGAGCGGATTGGACTTCAACGGATGAAGCTTCAGGGAGTGCTTGGGATGACAGACAGTTACCACAAGATGACGCAGCCTCAACACCAGTGGAGATAGAGTGTTAACAAAAAGCATGACGAATAAGCCAATGGCAGGTTCACGAGAAGTCATCAGCTGGAACAGAAGAGatgtgcaaagGAGGCCGTTTACTGCAGGTGCAAAAATAAACTTATCTGAAACCAGGTATATAACCTTGACCAAGGAGGGGTTTGTGCGTCTGATGTTCCGCTGTCTGGAGTGCTCCAGTGAGTGCCGGATCCGAGGGAAAGGCAGAGGTGGGAATCTCACTTTCAGACAAGAGTGCCTGATCTGCTGTAACTACAGAGTGTGGACCTCTGAGGCAGCTGGTATACCAAACAACAAGGTAACTGATGAGTGTTCGCCATGTGGCGATGCTTGTGGGCCGTCATTTGATAGCATACCTGTGACTGTTGACCAGGAACACGCGTCTGATGAGTCTCCAAAGCTGACATATGAGGACAATGCTCAGGCTGCTGAGGATTCCATCTCAGTGAGAGAGGAGCATGACGAGAATGTGAGGGAGGAGGAGCTGAGTCTCCTGATGGAAACACATGAGGACAGTGATGAGGAAGAGGGTTCAAACCTTGCACTGATAAGCGATGACACCGCTAACCAAACTTACCCTGAGTCTTCTGACACACTGACGGCTGATGAGGAACTGTTTATTGATGAGTACAGTGGTGAAGAGCTtgctgaaaaagaaagtgaCAAATCCTCTCAaaacagacaggaagaggaTTTTGACGTGTACCTCCTGAGCTCCTCAGACGAAGCCAATGTGAGTGTAGATGAGGAAATATTTACTGATGAGGACAGAAGTGAAGAGCTTGCTGAGAAAGCGAGCGACAAGTCCTCTAAAAAGGGACAGCAAGACGATTCGGATGAGTACCTGCCGAGCTCCTCGGACGAGGCCTTGGAGAGCTGTGATGAAGAAACTTCTGACGAGGAGTATACCAAGAAACCATTTCAGAACACTATTAAACCAGTAATTTGGTGCATAGACTGTGAAGCTCTAGCTAAAATGTTCTGTTCAATTCAGCGGCACAAGAAGAACTATTGCTGTGCCGAGTGCATCTCTGGCGATAGTGTCGAGAACCTCAGTTTAAAGGACTTCTCCGTTCGTTTTAATGATGTCCGGAGTTTTCATCTGCATGCCATGGCTGAGCATAGTGGCACGGAAAACCTTTACGAGCGCAAGATCTGTCAGGactgtaataaaacaatcagGGTGGAGACGGACCCCAACAAGAAGAGCCATGTGTGCGAGTACAAGATTAAACCATTTTCCTGTAATGTGTGCCACAAGCACTTCTTCACAGAAATTGGACAAAAAGTGCACTACCGTCGCTTGCACGGAGACTACCAACACGCCTGCAAGTACTGCATGATGGCGTTTGATACAAAACAGTCCAAGCTAGAGCATGAGCAGAGTCACAAAACAGACACGCTGCCCTATATGTGCCCGGACTGTCCAGAAAAGTTTAAAGATTTTGTTACACGCAATGAGCATTTAAAGACCCACCGAGGTAAAAAGAAATACATCTGCAGCACATGCAATAGGAAATTTACCGCGCTTCACAGATATGAGAGACACTTGCGCATACACTCAGGGGAGAAACCTTAcaagtgtgaggtgtgtgaccGTTCCTTCAACCAGGACGGACACTTGAAGTCCCACATGCGTCTCCACACAGGGGAGAAACCCTTCTTGTGTGAGCATTGTGGAGAATCGTTTAATCACAACATCAGCCTGAAGAACCACCGGCAGAGACAACATGGCATCAACTGTAGCTGTGTGCCAGCAGAGGAGAGCAAACAGATCGGTAGACCCATAAGGAACAAAGATCAGCTTAGAAGGCAAAGAAAAATGCACTCTACTGCTGATGCTGAGATGGAGAGTTGCGAGTCCGACTTTGATGAAGAACAGCAGAAAAGATGTCGGAAGAGGAAAGCCAGAAGGAAGAAACGAGGAAAAATTAATGTACAAGCAGACATTTGAGCTCTGTATAAGAGAGAAATGTACTTTTACACGTGCGTGATCTGTTCATTGAGATGAGATGCAAGAAATCAAATGGTGTCAGAGaccacatgattttatttttgcatatacACTCAAGCAGAAACCACCAGAATTACTGAAAAGTAAAGCAGTTACTAGCTAGGAGTTTGCTTACACAGTGTTTCCCCTACAGGTCAGTGTTCACTTTAATATGTACTGTTATGTACTGTTTGAAATCAAATTATAGTTGTTATGTGCTgtttaaaatcaaattataGTTGTTATGTACTGTTTAAAATCAAGTTATAGTTGAGAATTGTTCTTCAGTCTTACCAAAAGTGCCTTACATTCCTACCATGAAATTCTTACAAGACTGATAAACAGCATTAAAAgtaaagtatttattttctattttagaaAACGAAGCTGGCTGCAACTACAGAATAATGCTGCTGTATGTAACAAATGTCATACAACCAATACGAAGTGCACATTATTATATAAGtgcaatttattaaagaatgcaaTGTGTGTTTAAAGGACATGTGAATTCATAAGCCCAGTCAAAGGTTTGGGAGCAAAGAGAATTATACAAAGTGAATCTTTGAAATAAAAACTTATGAAAATGGCtgtttcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72863 lncRNA downstream 1830 9312797 ~ 9313019 (-) True G61518
TU72841 lncRNA downstream 155734 9151418 ~ 9159115 (-) True G61496
TU72836 lncRNA downstream 189541 9120761 ~ 9125308 (-) True G61492
XR_004578045.1 lncRNA downstream 204884 9107528 ~ 9109965 (-) True LOC117597152
TU72833 lncRNA downstream 217975 9088707 ~ 9096874 (-) True G61489
TU73304 lncRNA upstream 106193 9428794 ~ 9430832 (-) True G61876
TU73311 lncRNA upstream 125914 9448515 ~ 9454706 (-) True G61881
XR_004578142.1 lncRNA upstream 177118 9499719 ~ 9499931 (-) True LOC117597234
XR_004578141.1 lncRNA upstream 180461 9503062 ~ 9503274 (-) True LOC117597233
XR_004578120.1 lncRNA upstream 183843 9506444 ~ 9506654 (-) True LOC117597212
XM_034303885.1 mRNA downstream 389912 8917374 ~ 8924937 (-) False LOC113524717
XM_034303886.1 mRNA downstream 389912 8917374 ~ 8924937 (-) True LOC113524717
XM_034303895.1 mRNA downstream 719224 8572259 ~ 8595625 (-) False LOC113526753
XM_034303894.1 mRNA downstream 735999 8572259 ~ 8578850 (-) False LOC113526753
XM_034303898.1 mRNA downstream 735999 8576612 ~ 8578850 (-) False LOC113526753
XM_034303893.1 mRNA upstream 46121 9368722 ~ 9377012 (-) True LOC117597149
XM_034303892.1 mRNA upstream 48063 9370664 ~ 9377012 (-) False LOC117597149
XM_026936209.2 mRNA upstream 61384 9383985 ~ 9389481 (-) False LOC113540032
XM_026936210.2 mRNA upstream 61384 9383985 ~ 9388099 (-) True LOC113540032
XM_026935959.2 mRNA upstream 68402 9391003 ~ 9412913 (-) True kcnj10a
TU72820 other downstream 330396 8983234 ~ 8984453 (-) True G61478
XR_004578041.1 other downstream 735999 8575506 ~ 8578850 (-) False LOC113526753
TU71817 other downstream 2415622 6882469 ~ 6899227 (-) False LOC117597002
trnae-cuc_12 other downstream 2871034 6443744 ~ 6443815 (-) True trnae-cuc_12
trnak-cuu_3 other downstream 3133890 6180887 ~ 6180959 (-) True trnak-cuu_3
TU72884 other upstream 15225 9337826 ~ 9338745 (-) True G61537
TU73323 other upstream 203973 9526574 ~ 9528803 (-) False LOC113526752
TU73432 other upstream 453677 9776278 ~ 9805318 (-) True G61972
TU73337 other upstream 705386 10027987 ~ 10037575 (-) False G61900
trnan-guu other upstream 1151795 10474396 ~ 10474470 (-) True trnan-guu

Expression Profile