RNA id: XM_026936311.2


Basic Information

Item Value
RNA id XM_026936311.2
length 2001
RNA type mRNA
GC content 0.48
exon number 14
gene id atp6v1h
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22702979 ~ 22737767 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCGGCTCAGCAGGTCCCCCAAAGGGTTAATTCTGACTCCCTTACACATGACGGTGTCACGTGATATCAGTCTCGTGACGTGTTGTTGCTTTTTGACAACCGAGGCAGCAGGTTTCTCGAGGTGAATAGCACGCAAGGGTTTGGACATGGACATCCGAGGAGCAGTGGACGCTGCTGTCCCGACCAACATCATCGCGGCCAAGGCGGCCGAGGTCCGAGCCAACAAGGTCAACTGGCAGTCCTACTTACAGGGCCAGATGATCTCAGGAGAAGACTGTGAGTTCATCAAGAAGTTTGAGGTTGCTCATTCTGAGCAGAAGCAGGCAATTCTGACAAATGAAGGACATCAGTGTGCAAAGACCTTTCTCAACCTAATGGCTCACATATCAAAGGAGCAGACGGTTCAATACATCTTAACCCTGATCGATGATACTTTGCAgGAAAATCATCAGCGAGTCAACATTTTCTTTGATTATGCCAAGAAGACGAAAAACACAGCGTGGTCATATTTCTTACCTATGCTGAACCGCCAGGACCTTTTCACCGTTCACATGGCTGCCAGGATCATTGCCAAGCTGGCAGCCTGGGGTCGGGATCTGATGGAAGGGAGTGATCTGAACTACTACTTCAACTGGATCAAGACTCAACTTAGCTCCCAGaAGCTACATGGTACAGGTGCagaaacaggaacaggaaccATCTCTCCCAGTGAAAGCTCTCAGTATGTTCAGTGTGTCGCTGGTTGCCTGCAGCTGATGCTGAGGGTGAATGAGTATAGGTTTGCCTGGGTCGAAGCTGATGGAGTGAACTGCATCACGGCAGTGCTGAGTAACAAGTGTGGCTTCCAGCTGCAATACCAAATGATCTTCTGCGTATGGCTTCTGGCCTTCAGCCCTCAGCTGTGTGAGCAGTTGCGCCGCTACAACGTGGTGCCCGCCCTCTCCGACATTCTGCAGGAGTCTGTCAAAGAGAAGGTCACTCGCATCATCCTCGCTGCTTTCAGGAACCTGCTGGAGAAGTCTGCAGAGAGGGAGACTCGTCAGGAATACGCTTTGGCCATGATTCAATGCAAGGTTCTGAAACAACTGGAGAATCTGGACCAGCAGAAATATGACGATGAGGACATTACTGATGACATCAAGTTCCTTCTGGAGAGACTGGGAGAAAGTGTCCAAGACCTCAGCTCCTTTGATGAGTACAGTTCCGAGCTGAAGTCTGGTCGACTTGAGTGGAGTCCAGTGCACAAGTCGGAAAAGTTTTGGAGAGAGAATGCCGTCCGTCTGAATGAGAAAAACTACGAACTGCTCAAGATTCTGACCAGGCTGCTAGAGGTGTCTGATGACCCTCAGGTTATTGCTGTGGCTGCTCACGATGTGGGAGAGTATGTAAGACATTACCCTCGTGGCAAAAGGGTGATTGAACAGCTGGGTGGGAAGCAGCTGGTGATGAACCACATGCATCATGAGGACCAACTGGTGCGCTATAATGCTCTACTAGCCGTTCAGAAGCTGATGGTGCATAACTGGGAGTATCTGGGCAAACAGCTGCAGTCCACAGAGCAGTCCACACCGGCTGTGGCCGCCCGCAGCTGAACTCTCTCTGAGCTTGTGTATGCATCAGTGGATGTTGTGTGAGTGTCTGTATTTGCTGaattgtggggggaaaaaaaagccttgatTCTCTGTGTTgatgttgtttatttgtgttcatAAGAGCACCTTGACTGCCCCAGGGTTACTGAGCTAACAGAGCATGATTCATGTATATATGCTATACATTACTGTAAGTGTATACACTTGCAGTCCTCTTTTAGTTGCAGTAGCAGTTTTCCATGTGCAGCCATTGCTCATAGGGGCTTTACTTTGATTTTGTAGAATTGTGCATCTTCATGCTTGTTGTGAAATGGTTGAGTAGTTTCCAAAGTGAGTgatattcagtgttatttatgTCTTATGTGTAATACAAGTATGCATTCCAATAAAGATTAACTTAATAAACCAA

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0000221 vacuolar proton-transporting V-type ATPase, V1 domain cellular_component
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82061 lncRNA upstream 50532 22649943 ~ 22652447 (+) False LOC113540463
TU81842 lncRNA upstream 175423 22527328 ~ 22527556 (+) True G68999
TU81788 lncRNA upstream 305878 22392839 ~ 22397101 (+) True G68954
TU81789 lncRNA upstream 315234 22383094 ~ 22387745 (+) True G68955
TU81775 lncRNA upstream 458154 22244588 ~ 22244825 (+) True G68947
XR_003404049.2 lncRNA downstream 189043 22926810 ~ 22938741 (+) True LOC113540593
TU82192 lncRNA downstream 264231 23001998 ~ 23004102 (+) True G69294
TU82369 lncRNA downstream 546787 23284554 ~ 23284926 (+) True G69443
TU82375 lncRNA downstream 553643 23291410 ~ 23291998 (+) True G69449
TU82453 lncRNA downstream 593266 23331033 ~ 23331529 (+) True G69514
XM_026935915.2 mRNA upstream 25779 22670489 ~ 22677200 (+) True tcea1
XM_034303428.1 mRNA upstream 50622 22649810 ~ 22652357 (+) True LOC113540463
XM_026936971.2 mRNA upstream 50622 22649827 ~ 22652357 (+) False LOC113540463
XM_026936932.2 mRNA upstream 56541 22641742 ~ 22646438 (+) True si:dkey-94e7.2
XM_034303351.1 mRNA downstream 12098 22749865 ~ 22757329 (+) True oprk1
XM_026936922.2 mRNA downstream 28496 22766263 ~ 22769071 (+) True chmp5a
XM_026936082.2 mRNA downstream 33206 22770973 ~ 22774754 (+) True bag1
XM_026936914.2 mRNA downstream 38872 22776639 ~ 22805934 (+) True myom1a
XM_026936916.2 mRNA downstream 38873 22776640 ~ 22805934 (+) False myom1a
XR_004578015.1 other upstream 940678 21752416 ~ 21762301 (+) False LOC113540377
TU82445 other downstream 580737 23318504 ~ 23320343 (+) True G69509
TU83028 other downstream 1371028 24108795 ~ 24109889 (+) True G69971
XR_003403979.2 other downstream 2121259 24859026 ~ 24871263 (+) False kif2c
XR_003404013.2 other downstream 2970060 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 3160368 25898135 ~ 25901843 (+) False LOC113539772

Expression Profile