RNA id: XM_026936318.2


Basic Information

Item Value
RNA id XM_026936318.2
length 2256
RNA type mRNA
GC content 0.38
exon number 4
gene id rgs1
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29986185 ~ 29989435 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCCTGTTCAGACCCACTCGACAGTCCCACACACTGGCAGAGTGCGCGGCAAGCAGATCCTGAACACCCGGAGTGGCAAAGATGGCCATAAAATTTTGTTGCTTTGCCAAGGAACCTGTTGAAGATGTTACAGTTTGGAGCGAGTCGATCGAAAAGCTACTGGAGTCCCCAGCTGGTTTGCATGCCTTCACGGAGTTCCTGAAGTCCGAGTACAGTGAGGAAAACATTATGTTCTGGCAAGCTTGTGAGGAATACAAGAAGATCTCATGCAGGACGGAAATGACGTGTGAGGCCAATAGGATCTACTCTGAGTTTGTACAAACGGAGGCTCCCAGGCAGATCAACATCGACTGTAAGACTCGAGCGACAATATCAAAAAAGATCGCAGAGCCTGACATGGCCACCTTCGACTTGGCCCAAGCTCTGATCTACAGGCTCATGACGAGGGACTCTTACCCGCggtttttaaaatctgacaTCTACCAAGGGTTGCTGCAGAAATGAGGCCACACCTGCCTTCTCTAGGATTAAATGTCTTTCATTAAGAGTGTGTTTGGTTCCCAGGTAAATGCACGTACATGTTCGTTCAGGCTGAACCGCTTGAGTTCCCATGGAGTTCTACTATAAAAAGCCACTCTCAATAGGCCATTTGGAACTGAGGAACTAAATGCTCTTCATTATAGATTATAGTGATTTACTCAATATGTCAGTATAGTGCCCTTTAccaaaaaaaactcaatttCAGCGACCACAGACATCCATATTAGAGACCTAAATAAACCACTAGTGATGTGCAGCGATTCTTAAAAGTTTGTTCACTGAGACATGTGACAGAATTTCCTTAAGATGttgtattgttaaaaaaaaatataaaataataaaacttgaGTCTTACCACCCGAGCCCATAATATACTGTTATGTGTACTTTCTTACAACGTTATCATGTACGTAAGCTTTCTAAGTATGTAAGGATCTACAACGCTATTGAAAATTGAAACGCCAAACTATTAGCTAAGTCAAAAATCAACTAGAAATATGCTGTAGTGCTTCAAAATCCGACATATCCGACATTTACAAAGTCAGGTACATTGTAAAAGTCAGAATAGCACCGATTGACAAATTTTTCAAGCAAATGTAGCTAGCTTTTGCTTGTACATGAAAGAGTAACTAGCTAGCCAACTTAGGATGACAATTTTTTGTGTACagctagacaaaaaaaaaaggcagatagTCTAGATTGATTGAAGTTGTCAAATAAATAGGTAGAGAAAACTGGCTAGCGATCTCTTAAGTAGCTAGGAAACGTAGCTGATTCAAACTTTTAACATAGTTTTTCCCATGGATATATACAATCTTGAAATTTCTGACACATGGATAAAAATTAGCTTAAGTTGATGCAGGAAAATGTAGCGCAAAACTTACAGCTACATTTTTTTCGGGATTACAAACGTACGTCACATGGTCTAGGTCTGTAATATGTGTTTCTGTGAATACACCCCAAATGAATGATTGATCATATCAACAATGTGCTAACGTAAACTCACCATCGATCTCACTATTACCTGGTAACTAGCGCACTTTAAGGAAATGTAATTGAGAGTGTATTGCATATCAAAACTGGCAAACATCACTCTTTGGACCGTTATATTGTACAGAAACTTGCAGGTTGCTGCACATTGTATTAGTTTGCGAAGTAGAATAAGGTTGTAGTCAAGTTTGTGGTGTGGTCATCTTTTAAGTATAACAAGcgtaagggtttttttttaacatgcttttgtttgacttttttttttctaataaatatgtgtatatatgtgtgtggcGGCCTGAGAAAACACTTTACATGGCGAAATTTTGAGTTTTTACAAGATTTGCTAAACTAAACTGGTTTCTCTTTTGCATCTATATCAATCAAAAGTACATTTCGCAGTTTGGCTACccttaaaaatgtaacatttactgAGGAAATCAGTCATTTCCATGCCATTTCAATGAAATCTATTTAAATTTGAGGTGTCAAACTATGGTACAGGTTGAAAATCCCAATTCTGGCCagctgatgggttttcccaggccaccacacatatgGTAAATTGCTTATTTGCGTGGATACGGTACACATATAAAAAGTCATCTACATACCACATGCGAAATTATATAGcagtcttttttattattattattataattattatgaaataGCTGTAAAACATCATGTACTGTATAAGTATAAAATTGCGCAATCAAATGTTGT

Function

GO: NA

KEGG:

id description
K16449 RGS; regulator of G-protein signaling

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87101 lncRNA upstream 56017 29929938 ~ 29930168 (+) True G73512
TU86755 lncRNA upstream 191980 29792516 ~ 29794205 (+) True G73185
TU86735 lncRNA upstream 220079 29765120 ~ 29766106 (+) True G73169
TU86721 lncRNA upstream 252822 29732651 ~ 29733363 (+) True G73155
TU86688 lncRNA upstream 262435 29722066 ~ 29723750 (+) True G73123
TU87134 lncRNA downstream 42875 30032310 ~ 30032788 (+) True G73533
TU87172 lncRNA downstream 95003 30084438 ~ 30084819 (+) True G73564
TU87146 lncRNA downstream 121177 30110612 ~ 30111156 (+) True G73545
TU87175 lncRNA downstream 122954 30112389 ~ 30112630 (+) True G73567
TU87176 lncRNA downstream 128571 30118006 ~ 30118492 (+) True G73568
XM_026935838.2 mRNA upstream 9894 29967671 ~ 29976291 (+) True rgs18
XM_026935987.2 mRNA upstream 225213 29752071 ~ 29760972 (+) True LOC113539887
XM_034303651.1 mRNA upstream 265417 29704488 ~ 29720768 (+) True rc3h1b
XM_026935837.2 mRNA upstream 305010 29673705 ~ 29681175 (+) True zgc:153115
XM_034304047.1 mRNA upstream 362388 29620111 ~ 29623797 (+) True asip2b
XM_026936317.2 mRNA downstream 9069 29998504 ~ 30001345 (+) True rgs13
XM_034303701.1 mRNA downstream 25220 30014655 ~ 30022571 (+) True blvra
XM_026937116.2 mRNA downstream 56460 30045895 ~ 30050490 (+) True ebi3
XM_026937105.2 mRNA downstream 108270 30097705 ~ 30109835 (+) True keap1a
XM_034303855.1 mRNA downstream 149568 30139003 ~ 30194574 (+) True zgc:110158
TU86682 other upstream 363148 29619993 ~ 29623037 (+) False asip2b
TU86406 other upstream 1074081 28874356 ~ 28912104 (+) True G72873
trnat-ugu_8 other upstream 2364802 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 2365508 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 2428283 27557765 ~ 27557902 (+) True LOC113540696
TU87615 other downstream 756696 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 756696 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 1072295 31061730 ~ 31097888 (+) False spsb4a
TU87898 other downstream 1361826 31351261 ~ 31353144 (+) False c4h22orf39
XR_004578111.1 other downstream 1780387 31769822 ~ 31776798 (+) True LOC113540067

Expression Profile