Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026936321.2 |
| length | 1000 |
| RNA type | mRNA |
| GC content | 0.39 |
| exon number | 5 |
| gene id | LOC113540096 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 29903744 ~ 30014565 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | description |
|---|---|
| K18173 | COA1; cytochrome c oxidase assembly factor 1 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU87217 | lncRNA | downstream | 79930 | 29929264 ~ 29929489 (-) | True | G73607 |
| TU87081 | lncRNA | downstream | 162528 | 29846674 ~ 29846891 (-) | True | G73492 |
| TU87071 | lncRNA | downstream | 215775 | 29792212 ~ 29793644 (-) | True | G73485 |
| TU87065 | lncRNA | downstream | 229287 | 29778555 ~ 29780132 (-) | True | G73481 |
| TU87028 | lncRNA | downstream | 243304 | 29765747 ~ 29766115 (-) | True | G73444 |
| TU87275 | lncRNA | upstream | 81225 | 30095790 ~ 30097973 (-) | True | G73652 |
| TU87279 | lncRNA | upstream | 86875 | 30101440 ~ 30102870 (-) | True | G73656 |
| XR_004578005.1 | lncRNA | upstream | 114163 | 30128728 ~ 30138872 (-) | True | LOC113540631 |
| TU87298 | lncRNA | upstream | 172331 | 30186896 ~ 30191121 (-) | True | G73670 |
| TU87313 | lncRNA | upstream | 181114 | 30195679 ~ 30197576 (-) | True | G73684 |
| XM_034303426.1 | mRNA | downstream | 109893 | 29868591 ~ 29899526 (-) | True | brinp3b |
| XM_026936933.2 | mRNA | downstream | 174228 | 29833662 ~ 29835191 (-) | True | rgs5b |
| XM_026937273.2 | mRNA | downstream | 184278 | 29813527 ~ 29825141 (-) | True | nos1apb |
| XM_034304160.1 | mRNA | downstream | 196862 | 29798170 ~ 29812557 (-) | False | ddr2b |
| XM_034304159.1 | mRNA | downstream | 201916 | 29797070 ~ 29807503 (-) | False | ddr2b |
| XM_034303698.1 | mRNA | upstream | 10504 | 30025069 ~ 30037066 (-) | False | wdr48b |
| XM_034303697.1 | mRNA | upstream | 10504 | 30025069 ~ 30037064 (-) | False | wdr48b |
| XM_034303699.1 | mRNA | upstream | 10504 | 30025069 ~ 30036526 (-) | True | wdr48b |
| XM_026936237.2 | mRNA | upstream | 22843 | 30037408 ~ 30043011 (-) | False | LOC113540054 |
| XM_026936236.2 | mRNA | upstream | 22843 | 30037408 ~ 30042993 (-) | True | LOC113540054 |
| XR_003403975.2 | other | downstream | 278562 | 29724588 ~ 29730857 (-) | True | zgc:110366 |
| XR_003404065.2 | other | downstream | 433692 | 29564602 ~ 29575727 (-) | False | LOC113540665 |
| XR_003404077.1 | other | downstream | 484358 | 29524989 ~ 29525061 (-) | True | LOC113540703 |
| XR_003404071.2 | other | downstream | 484732 | 29524509 ~ 29524687 (-) | True | LOC113540697 |
| XR_003404072.2 | other | downstream | 485507 | 29523723 ~ 29523912 (-) | True | LOC113540698 |
| TU87233 | other | upstream | 4941 | 30019506 ~ 30022525 (-) | True | G73619 |
| TU87613 | other | upstream | 727104 | 30741669 ~ 30743826 (-) | False | LOC113540055 |
| TU87656 | other | upstream | 758898 | 30773463 ~ 30775819 (-) | True | ccl20l |
| LOC113540068 | other | upstream | 1852517 | 31867082 ~ 31870008 (-) | True | LOC113540068 |
| LOC117597010 | other | upstream | 1855953 | 31870518 ~ 31871874 (-) | True | LOC117597010 |
