Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026936331.2 |
| length | 2190 |
| RNA type | mRNA |
| GC content | 0.58 |
| exon number | 10 |
| gene id | acvr1l |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 30212389 ~ 30223320 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0003342 | proepicardium development | biological_process |
| GO:0021556 | central nervous system formation | biological_process |
| GO:0003140 | determination of left/right asymmetry in lateral mesoderm | biological_process |
| GO:0003146 | heart jogging | biological_process |
| GO:0046588 | negative regulation of calcium-dependent cell-cell adhesion | biological_process |
| GO:0042475 | odontogenesis of dentin-containing tooth | biological_process |
| GO:0051216 | cartilage development | biological_process |
| GO:0048264 | determination of ventral identity | biological_process |
| GO:0030510 | regulation of BMP signaling pathway | biological_process |
| GO:0051260 | protein homooligomerization | biological_process |
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0003230 | cardiac atrium development | biological_process |
| GO:0009952 | anterior/posterior pattern specification | biological_process |
| GO:0035124 | embryonic caudal fin morphogenesis | biological_process |
| GO:0048332 | mesoderm morphogenesis | biological_process |
| GO:0001889 | liver development | biological_process |
| GO:0035162 | embryonic hemopoiesis | biological_process |
| GO:0060030 | dorsal convergence | biological_process |
| GO:0001944 | vasculature development | biological_process |
| GO:0001947 | heart looping | biological_process |
| GO:0035462 | determination of left/right asymmetry in diencephalon | biological_process |
| GO:0005938 | cell cortex | cellular_component |
| GO:0070724 | BMP receptor complex | cellular_component |
| GO:0005515 | protein binding | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0005024 | transforming growth factor beta-activated receptor activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU87313 | lncRNA | downstream | 18087 | 30195679 ~ 30197576 (-) | True | G73684 |
| TU87298 | lncRNA | downstream | 24542 | 30186896 ~ 30191121 (-) | True | G73670 |
| XR_004578005.1 | lncRNA | downstream | 76791 | 30128728 ~ 30138872 (-) | True | LOC113540631 |
| TU87279 | lncRNA | downstream | 112793 | 30101440 ~ 30102870 (-) | True | G73656 |
| TU87275 | lncRNA | downstream | 117690 | 30095790 ~ 30097973 (-) | True | G73652 |
| TU87486 | lncRNA | upstream | 254083 | 30477403 ~ 30478234 (-) | False | G73834 |
| TU87487 | lncRNA | upstream | 254083 | 30477403 ~ 30478234 (-) | False | G73834 |
| TU87488 | lncRNA | upstream | 254083 | 30477403 ~ 30478234 (-) | False | G73834 |
| TU87489 | lncRNA | upstream | 254083 | 30477403 ~ 30478234 (-) | True | G73834 |
| TU87490 | lncRNA | upstream | 254083 | 30477403 ~ 30478234 (-) | False | G73834 |
| XM_034303327.1 | mRNA | downstream | 130802 | 30064050 ~ 30084861 (-) | True | crlf1a |
| XM_034303448.1 | mRNA | downstream | 158943 | 30050560 ~ 30056720 (-) | True | odf3l2a |
| XM_026937101.2 | mRNA | downstream | 159255 | 30050560 ~ 30056408 (-) | False | odf3l2a |
| XM_026936237.2 | mRNA | downstream | 172652 | 30037408 ~ 30043011 (-) | False | LOC113540054 |
| XM_034303822.1 | mRNA | upstream | 370386 | 30593706 ~ 30701045 (-) | True | epha4b |
| XM_026937067.2 | mRNA | upstream | 497712 | 30721032 ~ 30724657 (-) | False | LOC113540512 |
| XM_026937066.2 | mRNA | upstream | 497712 | 30721032 ~ 30724657 (-) | True | LOC113540512 |
| XM_034303856.1 | mRNA | upstream | 518207 | 30741527 ~ 30750968 (-) | True | LOC113540055 |
| XM_026937106.2 | mRNA | upstream | 550129 | 30773449 ~ 30775702 (-) | False | ccl20l |
| TU87233 | other | downstream | 193138 | 30019506 ~ 30022525 (-) | True | G73619 |
| XR_003403975.2 | other | downstream | 484806 | 29724588 ~ 29730857 (-) | True | zgc:110366 |
| XR_003404065.2 | other | downstream | 639936 | 29564602 ~ 29575727 (-) | False | LOC113540665 |
| XR_003404077.1 | other | downstream | 690602 | 29524989 ~ 29525061 (-) | True | LOC113540703 |
| XR_003404071.2 | other | downstream | 690976 | 29524509 ~ 29524687 (-) | True | LOC113540697 |
| TU87613 | other | upstream | 518349 | 30741669 ~ 30743826 (-) | False | LOC113540055 |
| TU87656 | other | upstream | 550143 | 30773463 ~ 30775819 (-) | True | ccl20l |
| LOC113540068 | other | upstream | 1643762 | 31867082 ~ 31870008 (-) | True | LOC113540068 |
| LOC117597010 | other | upstream | 1647198 | 31870518 ~ 31871874 (-) | True | LOC117597010 |
| TU88351 | other | upstream | 1647839 | 31871159 ~ 31871639 (-) | False | LOC117597010 |
