RNA id: XM_034303540.1


Basic Information

Item Value
RNA id XM_034303540.1
length 3600
RNA type mRNA
GC content 0.50
exon number 11
gene id acvr1l
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 30212389 ~ 30223320 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTAGCTAAGCATTTGAATCATGTTAGCATCTTGCTAGTTAGCGTGTTTATTAAACCCACAGTGCTCTGAGTGATAACCTGTGGAAGGGAGTTGTTAAAGgaaatatttctattatataGGAAGATGTCTGCTCTGGAGAGATGACTGGCTGTGGGTTCAGGGTTTAAAGACAGAGTTAAGAATCACAGCAGGGTTTGTACAATGCAGTGAACCAAATGGGTCATCGCTGCACCAGAGTCCTTTTCCTCGTGCTGCTCCAGGCGTTGCAGACGTTAGCTGAAGatggctccatcgagtgtgtgtgcatgggcaGAGACTGCATGGCGCAGCAGTGTAAAGGCGATCAGTGCTATTCCTCCGTGACCGTCAGAGACGGCGAGCCCTCGTTCCACCGCGGCTGCCTGATTGGCCCCGACAGCAGGAGTCTGACCTGCTTGGCTTCTCCTTCGGCCAGTCACGTGATAGAATGCTGCGCTCAGCCCATGTGCAACGCCAACACCTCGGTGGACTCGCTGATTCAGCTGCTGCTCAGGAGTAAAGAGGATACATCGGATCCAGAGGAAGAACCCATGTGGTACAGTGCGAAGACTCTGGTACTGCTGGTCCTGCTGGTCCTGGTTCCTTTCGCCGTGTTGGCGCTGCTCGCCATGCTGGCCGCGCCCGTGTGCTGGCGTCTGCACCCACGCCGGCTGGAGCGTCTGCACGAGTTCGACACGGAGCAGGGCGCCATCGACGGCCTCATCGCCTCCAACGTGGGCGACAGCACCCTGGCGGACATGCTGGATCATTCCTGCACCTCGGGCAGCGGCTCAGGCCTGCCGTTCCTGGTGCAGAGGACGGTAGCGCGCCAGATCAGCCTGGTGGAGTGTGTTGGGAAAGGGCGGTATGGAGAGGTGTGGAGAGGACAGTGGCAGGGAGAAAACGTAGCCGTGAAAATTTTCTCCTCCAGGGACGAGAAGTCATGGTTTCGGGAAACAGAAATCTACAACACGGTTCTGTTACGGCATGAAAATATATTAGGGTTCATGGCGTCAGACATGACGTCCCGCAACTCAAGCACGCAGCTGTGGCTGATCACACACTACCACGAGCACGGCTCGCTGTACGATTACCTGCAGCGCACTGCCGTGTCTGCGCCCGACGCCCTGAACATGGCCGCCTCGGTGGCCAGCGGCCTGGTGCACCTGCACGCCGAGATCCTGGGCACAGAGGGCAAGCCGGCCATCGCCCACCGCGACCTCAAGAGCAAAAACATCCTGGTGAAGAAGGACATGCGCTGCTGCATTGCTGACCtcgGTCTGGCGGTCACTCACACGCAAGCAGACAATCAACTTGACGTAGGTAACAACCCCAAAGTAGGCACCAAGCGCTACATGGCCCCCGAGGTGCTGGATGAGACGATTCAGATGGACTGCTTTGACGCCTATAAGAGAGTGGACATCTGGGCGTTTGGCTTGGTGCTGTGGGAGATTGCTCGACGCACCTACAGTAACGGGATCGTGGAGGACTACAAGCCTCCGTTCTACGACCTGGTACCCAACGACCCCAGCTTTGAGGACATGcgtaaagtggtgtgtgtggagcagCAAAGACCCTTCATCCCCAATCGCTGGTTCTCTGATCCGACGCTCTCGGCTCTGGTGAAGCTGATGAAGGAGTGCTGGTACCAGAACCCGTCGGCCCGACTGACGGCGCTACGCATTAAAAAGACTCTGGATAAAATCCTCAGCTCGTTAGAGAAGGGAAAACCGGACTGCTGAGCCCAGACTCTGGAGCATTGTTTTTATTCTGGACCTGATTTGGGATCAGCTCCCTCACGCATCAGAACCTCGAAACGTTTTCCATTCGTTGTGTAGAGCCCTGCGCTTTGACACTCCTGATCCAGCTTCCAAgccatttttatttcctgtcagAGATCCAAGAGGAAAGTTGTTGGCACTGGGTTTTAGCTCATTTCACTCTAATTTCACTCGTACTGATGCTGCTGCATGGATCTCGGGGAGCTGATCCTAGATCTGAGGTGCGTTTTTAAACAGGAAAGACAATCTCGCCGTAGAGGAGCGTGAGACGCAACGCTGGATAAATTCTATCTACTTGAGcaacatttttggaaagaagTGAACCAGTGACTTAAAGCTACTTCTCCTTCCTGTCAGTCATGATGGAGGGATTGACGAGCCGTTTGCCTCAGCAGGCATCCCGGCTCCTTCACACGCCCTCTCGGCGCGGTGACATCATTGTATCGTTTCTTCCCGGTGCCTGCATGATAAAAGCCATCGGATCGCTTGCACATCTTGCAgcagcctgtctctctctctctctctctctctctgcctcttacTCTCAATTGACAATCGCGCACTGCTCAATTGCTCCTGCACTATTAGGCagcgtttgttttttttttttaattattattattttaaaaatacgaGTCCTGTGTCCCAATGCTGCGACGCTATTACGAGCGCTCCTCTTGACCTTTTATGGCGCTTAAAAGTTTCCCCTCCTCCTTCCGTTCAGCATAAACACGTACTCTCGGCTTTCCAGCACGTACGTTACACTTTAACGTGAGTGTCCCGGGTTCAGCGTGAATTTGCGAATAGTATGCAGGCTGTGTTTCAAAATGCGTGAAACCCATATCCGTGACGGCGCTTAGAATCTGTACAGTGCTGCGTACGCATTTTTAGGACtaaataatgcctcataaagctctaGAGTAAAGCGCTGTAATTAATTCTTCGATGGCTTGTCGAACGGTTTGAATGGTTTCTACCACAGccgtgttgattcattttctaacaCACTACAGCTTGTACGGACTTCGATCTTatctaagcctaataaacagatattttttttttggaaggagtctccagtgtcagagctttatgTGGCAGTATTGACAGTTATCAGATTAGCTTTATAACAGACGGAAAACGTAAGATTTAGATTGTATCGTCGTGAGAATCAGGGCAAAGACGTAGGAATACCGCTACACATCGTAAAACTGTGACTGTAACCGgatgtaatataatgtatttaaagaTAGGAATATTAAGAGTAGGACGTGATGCGGTTTAACCTGCTTTGGTTTCGCTAAATTTCCTCAAGCACGTCTCGTTTCGTCCAACAACACGACTTCTCTTTATCGGCACTGTgtgaggagggaaaaaaactgaaaacccGCATCAATCACAAAAAAGCCACTAATCGATGACTTTTGAGTTGTCGCAAATTAGTATCTAGCACACTACATCAAGCCTTCCAGCAGCATCTAGAAGCGCGACTGTCTCGCCGAGCCGCGTCTGctgccatcacacacacacacacacacacactcttgcgcTAGAGGAAGCCAGAGTCATCTTCCTTCCACAATATTTCTAACAGGTTTTGAGAAGGGAAGCGAACGCCGATGGATATTTCGCCTATTCGCGTCTTTCCCcttcttccccaaacaaacagcacaaataataatctgatttgttttgttttttttaaaggatgtgTGAATTCATTATGCACATTTTACCTGCAAGGCAACAAAATTGTCCTCCACAATAACCAAAATAATTCTCTTTATTGCCTAAATGGATT

Function

GO:

id name namespace
GO:0003342 proepicardium development biological_process
GO:0021556 central nervous system formation biological_process
GO:0003140 determination of left/right asymmetry in lateral mesoderm biological_process
GO:0003146 heart jogging biological_process
GO:0046588 negative regulation of calcium-dependent cell-cell adhesion biological_process
GO:0042475 odontogenesis of dentin-containing tooth biological_process
GO:0051216 cartilage development biological_process
GO:0048264 determination of ventral identity biological_process
GO:0030510 regulation of BMP signaling pathway biological_process
GO:0051260 protein homooligomerization biological_process
GO:0006468 protein phosphorylation biological_process
GO:0003230 cardiac atrium development biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0035124 embryonic caudal fin morphogenesis biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0001889 liver development biological_process
GO:0035162 embryonic hemopoiesis biological_process
GO:0060030 dorsal convergence biological_process
GO:0001944 vasculature development biological_process
GO:0001947 heart looping biological_process
GO:0035462 determination of left/right asymmetry in diencephalon biological_process
GO:0005938 cell cortex cellular_component
GO:0070724 BMP receptor complex cellular_component
GO:0005515 protein binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0005024 transforming growth factor beta-activated receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87313 lncRNA downstream 14813 30195679 ~ 30197576 (-) True G73684
TU87298 lncRNA downstream 21268 30186896 ~ 30191121 (-) True G73670
XR_004578005.1 lncRNA downstream 73517 30128728 ~ 30138872 (-) True LOC113540631
TU87279 lncRNA downstream 109519 30101440 ~ 30102870 (-) True G73656
TU87275 lncRNA downstream 114416 30095790 ~ 30097973 (-) True G73652
TU87486 lncRNA upstream 254644 30477403 ~ 30478234 (-) False G73834
TU87487 lncRNA upstream 254644 30477403 ~ 30478234 (-) False G73834
TU87488 lncRNA upstream 254644 30477403 ~ 30478234 (-) False G73834
TU87489 lncRNA upstream 254644 30477403 ~ 30478234 (-) True G73834
TU87490 lncRNA upstream 254644 30477403 ~ 30478234 (-) False G73834
XM_034303327.1 mRNA downstream 127528 30064050 ~ 30084861 (-) True crlf1a
XM_034303448.1 mRNA downstream 155669 30050560 ~ 30056720 (-) True odf3l2a
XM_026937101.2 mRNA downstream 155981 30050560 ~ 30056408 (-) False odf3l2a
XM_026936237.2 mRNA downstream 169378 30037408 ~ 30043011 (-) False LOC113540054
XM_034303822.1 mRNA upstream 370947 30593706 ~ 30701045 (-) True epha4b
XM_026937067.2 mRNA upstream 498273 30721032 ~ 30724657 (-) False LOC113540512
XM_026937066.2 mRNA upstream 498273 30721032 ~ 30724657 (-) True LOC113540512
XM_034303856.1 mRNA upstream 518768 30741527 ~ 30750968 (-) True LOC113540055
XM_026937106.2 mRNA upstream 550690 30773449 ~ 30775702 (-) False ccl20l
TU87233 other downstream 189864 30019506 ~ 30022525 (-) True G73619
XR_003403975.2 other downstream 481532 29724588 ~ 29730857 (-) True zgc:110366
XR_003404065.2 other downstream 636662 29564602 ~ 29575727 (-) False LOC113540665
XR_003404077.1 other downstream 687328 29524989 ~ 29525061 (-) True LOC113540703
XR_003404071.2 other downstream 687702 29524509 ~ 29524687 (-) True LOC113540697
TU87613 other upstream 518910 30741669 ~ 30743826 (-) False LOC113540055
TU87656 other upstream 550704 30773463 ~ 30775819 (-) True ccl20l
LOC113540068 other upstream 1644323 31867082 ~ 31870008 (-) True LOC113540068
LOC117597010 other upstream 1647759 31870518 ~ 31871874 (-) True LOC117597010
TU88351 other upstream 1648400 31871159 ~ 31871639 (-) False LOC117597010

Expression Profile