RNA id: XM_026936332.2


Basic Information

Item Value
RNA id XM_026936332.2
length 2608
RNA type mRNA
GC content 0.47
exon number 11
gene id d2hgdh
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 30205198 ~ 30211975 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTCAGGCcacgaagaagaagaaaaagaaaacacaggaAGTCGTGTCAGTGTTGTCTTTCAGGTGTTTCGTGGTTTATAATATTAATCACCTGTTTTACAGCGAGTCGAAATTAATGGATAATTCCAGCTAAATCCTACACTATGGCGGTGTTTCAGAGATTTCAGCGGCTGCAGTTTGTCTCCAGATGCCTAAAACCACAAACCTGTAATGTGACTGCACACAAAACCGTCACAGAACGGATCCAGCAGCGACGTGCACACGATGCCGCCCCGACCCGGCGACCTTTCTCCCGAGTCACACCCGATGACCTCAGCTTCTTCAGCGATCTTCTCCCAGGAAGAACCATCACAGACCCGGACGTGTTGGAGTCCTGTAATGTCGACTGGCTCAGGACAGTGAAAGGTAGCAGTGAGGTTCTGTTACGGCCCAAGACAACAGAGGAGGTCTCTCAGATCCTCAGGTACTGCAACGAGAGGAACCTGGCTGTGAGTCCTCAGGGCGGAAACACGGGGCTGGTGGGAGGCAGCGTTCCCGTGTTCGACGAGATCATCCTCTCCACTGCGCTTATGAACCGAGTCGTCACCTTCGACAGCATCTCGGGGATTTTGACGTGTCAGGCGGGCTGCGTGTTGGAGAGCCTGTCTCAGTACGTGGAAGAGCGCGACTTCATTATGCCTCTGGATTTGGGGGCAAAGGGCAGCTGCCACATCGGGGGCAACGTGTCCACCAATGCGGGAGGGCTTCGCTTACTGCGCTACGGCTCCCTCAGAGGGACAGTTCTGGGCCTGGAagtgGTGCTGGCTGACGGCAGGGTTTTGGACTGTCTGGCGAAACTGCGTAAGGACAACACGGGCTACGATATGAAGCAGCTCTTCATCGGTTCTGAGGGAACGCTTGGGGTGATCACTGGCGTGTCCATCCTCTGCCCTCGGAAACCCAAATCTGTGAACGTGGCCTTCTTAGGCTGCTCAAGCTTCCAGAACCTCCTGGAGACGTTTCAGATTTGCCGTGGGATGCTGGGAGAAATCCTCTCGGCTTTCGAGTTCCTAGACGCCTCCTGCATGAGCCTCGTGGAGAAACATCTCAAGCTCGCCAACCCCATCGCCGaGAGCCCTTTTTACATCGTCATCGAGACGGCTGGATCCAGCGCAGCACACGATGAGGAGAAACTGCACAACTTCCTAGATAAGGTCATGGCGTCTTCGCTGGTTGTGGACGGTACCGTTGCAACAGAGGAGGCTAAAATAAAGgcgctTTGGTCTATAAGAGAGAGGATCACCGAGGCTCTAAGACACGATGGATACACGTACAAATACGACATCTCACTTCCCCTGGAGAAAATCTACGATCTGGTCACTGACATGAGAGAGCATCTGGGAAACCAAGCGAAGAACGTAGTGGGCTACGGACATGTCGGTGACGGCAACCTTCATTTGAACATCACGTCTCCCCGTAAAGACGCAGCGCTTCTGTCAGCCATCGAGCCGTACGTGTACGAGTGGACGTGGAAGTGGCAGGGAAGCATCAGCGCCGAACACGGCCTCGGGCTCAAGAAGAGAAACTACATCTACTACAGTAAATCCCAGGAAGCTGTACGCCTCATGAGGGACTTTAAGATCATGCTGGACCCCAAAGGGATTCTCAACCCGTATAAGACACTTCCTGATAACGTTCGCTGACTCCAGCGCTCACGGAAACATCTTcacgtttttaatctgtaaaGTAGCACTGAGGCGGTAGGGAAAAATTCATAGGgtttaaacatttctgtttatgcaCCAGAGTCCAATTTCAACACGATTTCAGACACAAATACTTTATAAATCTATTAACAAGCCCTGGGAATTTAATGATTTGCTgtgaaaatgaatataataCACATCTGTGTTATTTATCAACAAATGTGATCAAGGTGTCGAGACTAAAGATGTTTGACCCCAGGGGTGTAACGGGAGGAAAAGCCGCCGCTGCtgcagttgctttttttttacgAGGATCACCTTTAACCTTCGTTGGTAGAAACATCATTTGCTCCGTTTTTCACCAGGTATGTCTGCActacagttttaaaaatctttaatactttaaaaaaaattttaacttcTATTTGAACATGGGCATTTgctgattaagaaaataaattaaaggtgcaatagtcattttttttcttattaataatacaaataagaTGGAAAAATATGATTGGTTTAAGTAAGTATTACATGGCTGAGAAAACGTGTTGGGAAATCCACGCAGTTTATAATAAAAGCTCATAAAAGCTTATTACAAAGATAAACGGACAGCGAATCGACTCGAGACTATTCTCTTAAATCATTATAATCTGTGATTATAGCGTTATATAGTGAGCTTGAACGTATTCTCATGACAGTTCTTGATAATGCTAACTCTAGCTGAACCGCCGTCGGAtctgggggcggagtttgtgtaCATGGATGGAGAAACGGAAGCGAGCTAAttaagatttaaatttttttttaacttcatcaGCTCCGCTTACTTAAGCTTACTTTTAGAAACTTAATCTGAGAAATGTGAGAAATCTTACTGAGTGCACCTTTGACACGTCACACTAgcaagtgttgttt

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005739 mitochondrion cellular_component
GO:0008762 UDP-N-acetylmuramate dehydrogenase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function

KEGG:

id description
K18204 D2HGDH; D-2-hydroxyglutarate dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87200 lncRNA upstream 12864 30150455 ~ 30192334 (+) True G73590
TU87186 lncRNA upstream 70333 30134652 ~ 30134865 (+) True G73578
TU87184 lncRNA upstream 74491 30130480 ~ 30130707 (+) True G73576
TU87179 lncRNA upstream 81948 30123023 ~ 30123250 (+) True G73571
TU87176 lncRNA upstream 86706 30118006 ~ 30118492 (+) True G73568
TU87379 lncRNA downstream 265450 30477425 ~ 30478250 (+) False uggt1
TU87380 lncRNA downstream 265450 30477425 ~ 30478250 (+) False uggt1
TU87498 lncRNA downstream 269447 30481422 ~ 30481625 (+) True G73839
TU87503 lncRNA downstream 381175 30593150 ~ 30593609 (+) True G73844
TU87504 lncRNA downstream 381259 30593234 ~ 30593609 (+) False G73844
XM_026937319.2 mRNA upstream 1188 30199694 ~ 30204010 (+) True znf622
XM_026937320.2 mRNA upstream 1449 30199694 ~ 30203749 (+) False znf622
XM_034303855.1 mRNA upstream 10624 30139003 ~ 30194574 (+) True zgc:110158
XM_026937105.2 mRNA upstream 95363 30097705 ~ 30109835 (+) True keap1a
XM_026937116.2 mRNA upstream 154708 30045895 ~ 30050490 (+) True ebi3
XM_026937072.2 mRNA downstream 13068 30225043 ~ 30237040 (+) True otomp
XM_026937167.2 mRNA downstream 126895 30338870 ~ 30447632 (+) True hs6st1a
XM_034303971.1 mRNA downstream 242782 30454757 ~ 30478293 (+) True uggt1
XM_026936553.2 mRNA downstream 569183 30781158 ~ 30845103 (+) True epha4a
XM_026936554.2 mRNA downstream 569183 30781158 ~ 30845103 (+) False epha4a
TU86682 other upstream 582161 29619993 ~ 29623037 (+) False asip2b
TU86406 other upstream 1293094 28874356 ~ 28912104 (+) True G72873
trnat-ugu_8 other upstream 2583815 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 2584521 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 2647296 27557765 ~ 27557902 (+) True LOC113540696
TU87615 other downstream 534156 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 534156 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 849755 31061730 ~ 31097888 (+) False spsb4a
TU87898 other downstream 1139286 31351261 ~ 31353144 (+) False c4h22orf39
XR_004578111.1 other downstream 1557847 31769822 ~ 31776798 (+) True LOC113540067

Expression Profile