RNA id: XM_034303654.1


Basic Information

Item Value
RNA id XM_034303654.1
length 2031
RNA type mRNA
GC content 0.42
exon number 3
gene id ackr4a
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23273523 ~ 23276801 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacagagagagagagtgacgtGGATCACTGGTCTGGAGTTTGCACACTTGGCAGCAAGGCAAGCAGGACAACAAACTAGAAGCTGTTCTCTGGCTCCTCATACAAGAATCAACATTGCATGTTTGGAAAGAATTTGCCCACAgtctttgacaaaaaaaaaaaaagaagcacagagggAATGTCAGGAATTGTGCAATTGTACGTTTAAAGAAACCTTAACTTTAAAAACAATATGGATTACACAGATGACGAGACTTATGACATTGAGGAAAATGACAACTTCAGCTACTACAACTACAGTGACTACGAAACCGTCTGTGAAAAAGAAGATGTTCGCTCCTTCGCTAGAGTCTTCCTACCAATTGTGTATGGGTTATCTCTATTAGTGGGGCTAACAGGAAATGCTCTGGTAGTGGCTGTGTATGCATATTCCAAACGCTTGAGGACGCTGATGGACACATTTGTGGTGCACCTGGCCGTGGCCGACCTCCTACTCCTACTGACCCTACCTTTCTGGGCTGCTGCTGCCGTTCATGGCTGGGAGCTAGGAGAGGTTCTCTGCAAGATTGTCACAGCCTTATACACCATCAACTTCACATGCAGCATGTTACTCCTGGCCTGCATCAGCCTGGACCGCTACCTTTCACTATTCCCACGACTCAGAGACCGTTTCCTGGTCCGGATATTTAAGAGAAACTACGCCGCCAAGCTCTGCCTGGTAGTGTGGACAGTTAGTTTCTTTCTAGGAATCCCTGATTTGGTGCTCTCGAAAGTTAAAGAGCATCCTAGTAGGAAGGTCTGCATGACCATGTACCCTTCAAGCATGGCCATTCAGGCAAAGGTGACCATGGAGGTGATAGAGGTGCTGCTGAGTTTCTTGGTGCCGTTGCTGATGATGCTGTATTGCTATTTCCATGTGGTACGGAAGCTGTTGGAGCTTCCACCAGAGAACAGAGGGAAAAGGTGGACAACAATTCGTGTACTGTTGGCAGTGGTTGGAGTTTTTGTGCTTACACAGTTTCCCTACAATATTGTGAAGTTCTGCCGAGTTCTGGATGTGATTCACATGTTCATAAGGCACTGTCAGACAAGTAAAGCACTGGACCAGGCAGCTCAGATTACTGAGAGTATGGCTTTGATCCACTGTTGTCTGAACCCTGTGCTTTATGTCTTTATTGGCTCATCCTTTAGAATACGTCTGCTAAGGTTTGCCAAAGCCTTTGGCCAGAGGAGGAGATTGGCACAGAGGGGAGAGGAGTGTGGTGTGGAGATCTCCGTTAATTCACACTCGCAATCCCAAAAGACAAGCTCCTTCTCCATATGAGTATATTTAAGAGTGATATAGAGGATGAGATATgaaatgtatgtttgtgtatctATCTGTATTCTATATTTAACAGCATAACCATGTTCTGATATATATTCGCATATTATCATTCAGTGAAGAAAGACCAGAAAAACAGGCTGGTTGAACTGGAATGCTACTGAAGTTGTTTTCTCTTTAACGGTAATGCCCTTTGTACTCAAGCAAAAGCTAAAAGTAAAAGAAACCCAAGCCCCAACAGACAGAGATGTACTTTGACAATATGTGCTAAATCAATTTAATACTAGTAAACTGCTCTGAAGTAAACTGGTGAAATGAACTGAACAAAGAAAGAACTGAACAACAACTGAACAAGATCTTAAATCATCACATTGCTCACCATCCAGCCAGGATTGAGAGGGGGTCAAAATACTGCACCCacaaaacacattacacacatatgcTACACATTGTGAAGATTTTCAACTCTTTTTCTTCTACAATATTTATATCGTCTTCTGACTAAACGTAGCTATATATCATTGCAGTTCACACTATGAACTATAATAGAGTAAGAGTTGTGGTgggtaaaaacaaacaacatgacTGCCTCCTACTAACACCCTCACTCAGTCTATCAGGTAGGTATTTGACTTGACTAtttgaattattaaatattcctTACATGATTAGAGATACAACTTCTAAATAAAGTGTGTACATACACA

Function

GO:

id name namespace
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04186 ACKR4, CCRL1, CCR11; atypical chemokine receptor 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82192 lncRNA upstream 269443 23001998 ~ 23004102 (+) True G69294
XR_003404049.2 lncRNA upstream 334804 22926810 ~ 22938741 (+) True LOC113540593
TU82061 lncRNA upstream 621098 22649943 ~ 22652447 (+) False LOC113540463
TU81842 lncRNA upstream 745989 22527328 ~ 22527556 (+) True G68999
TU81788 lncRNA upstream 876444 22392839 ~ 22397101 (+) True G68954
TU82369 lncRNA downstream 7753 23284554 ~ 23284926 (+) True G69443
TU82375 lncRNA downstream 14609 23291410 ~ 23291998 (+) True G69449
TU82453 lncRNA downstream 54232 23331033 ~ 23331529 (+) True G69514
TU82463 lncRNA downstream 90860 23367661 ~ 23368677 (+) True G69522
TU82521 lncRNA downstream 170662 23447463 ~ 23457206 (+) True G69570
XM_026937016.2 mRNA upstream 43092 23215075 ~ 23230453 (+) True si:ch211-106h4.6
XM_034303414.1 mRNA upstream 59354 23199939 ~ 23214191 (+) False si:ch211-106h4.4
XM_034303413.1 mRNA upstream 71576 23181870 ~ 23201969 (+) True si:ch211-106h4.4
XM_034303415.1 mRNA upstream 71576 23186786 ~ 23201969 (+) False si:ch211-106h4.4
XM_026936910.2 mRNA upstream 129459 23124180 ~ 23144086 (+) True cacnb2b
XM_026936872.2 mRNA downstream 68257 23345058 ~ 23349627 (+) True rnf182
XM_026936893.2 mRNA downstream 77168 23353969 ~ 23376185 (+) False ranbp9
XM_026936894.2 mRNA downstream 77168 23353969 ~ 23376185 (+) False ranbp9
XM_026936892.2 mRNA downstream 77170 23353971 ~ 23376185 (+) True ranbp9
XM_026936928.2 mRNA downstream 110208 23387009 ~ 23391001 (+) True epdr1
XR_004578015.1 other upstream 1511244 21752416 ~ 21762301 (+) False LOC113540377
TU82445 other downstream 41703 23318504 ~ 23320343 (+) True G69509
TU83028 other downstream 831994 24108795 ~ 24109889 (+) True G69971
XR_003403979.2 other downstream 1582225 24859026 ~ 24871263 (+) False kif2c
XR_003404013.2 other downstream 2431026 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 2621334 25898135 ~ 25901843 (+) False LOC113539772

Expression Profile