RNA id: XM_026936340.2


Basic Information

Item Value
RNA id XM_026936340.2
length 2085
RNA type mRNA
GC content 0.54
exon number 15
gene id fzr1b
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28716264 ~ 28722857 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gcgTCGCAGCTGATTGTTCCGCCATCTTGACAGAAACGTAAACATTCATTCTCAGTCGCTTTGCTGGGAAGCTAACTGCGAATCTGTCCACAGCTAAATAAGACAGAAAACGGTTGGGTCCTGAACTTTTGTCAACAGATGCATCTTGAAAAATGATAACGGAGAGGTCGGATACTCAAAATGCCCCATAATTGCGTTTTATAAGCAGCAAAACAGggATGGAAGACGTGGGCAGAGCTGCGAGTGCAGACTGAGGCAGAGACAGAGCGGAAATGGACCAGGACTATGAGAGACGCCTCCTCAGGCAGATCAACCATCAGAACCTGCCAGATGGTCACGTGTCCAAGtcCGGCTTTGCCGCATGCAGTCCAGTCAGTGTTAAGTCAGGCGACAGATTCATACCCACTCGCGCAGGAAGCAACTGGAGCATCAACTTCCATTACGCCAACGAAAACTGCTGGTCTCCTAACCAGAATCAGCGCTCAAAGGACGCCAGTGCAGACACTGGAAAGGACGCAGTGGCCTATGCTGCTCTGCTGCGGAACGAGCTCCTGGGAGCGGGCATCGAGACCGTACCCGACCCTCACACAGACGACCGACGGCATGCCATCCTCTCCCAGGACATACACAGCCTCTTCAGGtacacacttcacacaaagAGAGTGCCTTTTGACAGCGGCAATGAAATCTCCCCATATTCCCTCTCTCCCCTCAGCAACAAAAGTCACAAGCTGTTGCGGTCACCGCGAAAGCCGGCACGAAAGATCTCCAAAATCCCCTTCAAGGTTCTGGATGCACCGGAGCTGCAGGATGACTTCTACCTTAACCTGGTAGACTGGTCAGCTGGAAACCTGCTCAGTGTTGGTCTTGGTGCTTGTGTGTACCTGTGGAGTGCCTGTACCAGTCAGGTGACGAGGTTGTGTGATCTGTCAGTCGATGGAGACTCTGTGACTTCAGTCTGCTGGAATGAGAGGgGAAGCCTGGTTGCTGTAGGAACCCACAAAGGCTTTGTGCAGATATGGGACGCAGCCGGAGGGAGGAAGTTAACCAGCCTGGAAGGACACTCGGCTCGTGTCGGAGCTTTAGCGTGGAACGGCGAGCAGCTGTCCTCGGGCAGCAGGGACAGGGTGATCCTACAGAGGGACGTCCGCGCGCCGCCTGCCGCTGAGAGAAGGCTACAGggccacagacaggaagtctGCGGCCTCAAGTGGTCCCCAGACCACCAGCATCTCGCCTCGGGAGGCAACGACAACAAGCTGCTAGTGTGGAACAGCTCGAGCCTGGTGCCCGTGCAGCAGTACAGCGAGCATTTAGCGGCGGTGAAGGCCATCGCCTGGTCGCCCCATCAGCACGGCCTGCTGGCATCCGGAGGAGGCACGGCCGACCGCTGCCTGCGCTTCTGGAACACGCTCACGGGACAGGCGCTGCAGAGCACCGACACCGGATCACAGGTCTGCAACCTGGCCTGGTCCAAACACGCCAACGagctgGTCAGCACACACGGCTACTCGCAAAACCAGATCCTGGTTTGGAAATATCCATCACTCACGCAGGTGGCCAAGCTGACCGGACATTCCTACCGTGTGCTCTACTTGGCTGTGTCTCCAGACGGCGAGGCTATAGTGACAGGAGCAGGAGATGAGACACTCAGGTTCTGGAACGTCTTCAGCAAAACGCGCTGCACCAAgGAATCCAAGTCAGTGTTGAATCTGTTCACCAGGATACGGTAGTGtcagaggacagaggaggaCTTGGGACTTTTCCGAGAGAACCCGAcgtctcttcctcctctccacACTCCTCCCCGTGTCTTCATTAAAAACCCACACCCGACGAGCGAGTCTGTTTGTTATCGTCCCGACTTTCTTATTACTGTATCATGTGAAAGTCCAAAAGGACGTGGTGTAATGTAAGTAGAGAGAGACGGTTTATCTATACGCCTGTCGTAATGGCTGTCTGCCCATTATGATATTTTCACTATTTTGTATGTGCAAATGCAAACGAGATCTCATTATCCGACAGAGGACCATATGGAAATAAACTCACTACTGCAGGATATCTGTTAGTAGTTTATGAAAATTT

Function

GO: NA

KEGG:

id description
K03364 CDH1, FZR1; cell division cycle 20-like protein 1, cofactor of APC complex

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85849 lncRNA upstream 57728 28658276 ~ 28658536 (+) True G72428
TU85843 lncRNA upstream 64643 28651414 ~ 28651621 (+) True G72422
TU85820 lncRNA upstream 79063 28619824 ~ 28637201 (+) True G72404
TU85824 lncRNA upstream 88291 28623240 ~ 28627973 (+) True G72408
TU85789 lncRNA upstream 137314 28574922 ~ 28578950 (+) True G72378
TU85891 lncRNA downstream 35698 28758555 ~ 28761451 (+) False gng5
TU85895 lncRNA downstream 64760 28787617 ~ 28791836 (+) True G72472
TU86346 lncRNA downstream 69990 28792847 ~ 28797137 (+) False selenot1a
TU86397 lncRNA downstream 139559 28862416 ~ 28901261 (+) True G72869
TU86402 lncRNA downstream 150746 28873603 ~ 28873988 (+) True G72872
XM_026936875.2 mRNA upstream 16848 28691096 ~ 28699416 (+) True aldh9a1b
XM_026936935.2 mRNA upstream 49633 28654756 ~ 28666631 (+) True slc1a7a
XM_034303288.1 mRNA upstream 105107 28602905 ~ 28611157 (+) False LOC113540233
XM_034303287.1 mRNA upstream 105107 28605823 ~ 28611157 (+) True LOC113540233
XM_026936573.2 mRNA upstream 105107 28605823 ~ 28611157 (+) False LOC113540233
XM_026937211.2 mRNA downstream 16269 28739126 ~ 28745646 (+) False si:ch73-344o19.1
XM_026937212.2 mRNA downstream 16270 28739127 ~ 28745646 (+) True si:ch73-344o19.1
XM_026935934.2 mRNA downstream 35688 28758545 ~ 28761448 (+) True gng5
XM_026936491.2 mRNA downstream 56892 28779749 ~ 28784107 (+) True otol1a
XM_034303989.1 mRNA downstream 56892 28779749 ~ 28784107 (+) False otol1a
trnat-ugu_8 other upstream 1094881 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 1095587 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 1158362 27557765 ~ 27557902 (+) True LOC113540696
XR_003404069.1 other upstream 1159616 27556517 ~ 27556648 (+) True LOC113540695
trnat-ugu_5 other upstream 1226939 27489253 ~ 27489325 (+) True trnat-ugu_5
TU86406 other downstream 151499 28874356 ~ 28912104 (+) True G72873
TU86682 other downstream 897136 29619993 ~ 29623037 (+) False asip2b
TU87615 other downstream 2023274 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 2023274 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 2338873 31061730 ~ 31097888 (+) False spsb4a

Expression Profile