RNA id: XM_026936344.2


Basic Information

Item Value
RNA id XM_026936344.2
length 3595
RNA type mRNA
GC content 0.42
exon number 6
gene id rab1ba
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20652575 ~ 20660555 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACTGCCACGTCATCTGATGTCACTGCCGCACCTGCGCAGCCATCTTGTACTTCTCCTGCGGccagagaggaaggaagaaaagcaAGGATAAATCAACCGTGCTGTTATTCAGTATAGTAATGTGTGGTAAGTAAAaagagctgacagaaaggcagTGTGCAGCGTGACAGCAGCGGAGGGTAAACAGAGACACAGCAGCGTTCGCCACAGTGCCTCAGAATTACAGACGGAGGAATCATCTGTTATCTAGGAGTCAAAAGAGGAAGGAAAAGTGTCCGTCAGATTtccacctttaaaaaaatacacaccgGCCTTCACCCACCATGAATCCTGAATATGACTACCTGTTCAAACTGCTTCTCATTGGTGACTCTGGAGTGGGCAAATCGTGTCTCCTGTTGAGATTTGCAGATGACACGTACACAGAGAGCTACATCAGCACCATCGGAGTGGACTTCAAGATCCGCACCATTGAACTGGATGGCAAAACTATTAAGCTTCAGATTTGGGATACCGCTGGACAGGAAAGGTTTCGCACCATCACTTCCAGTTACTACAGAGGAGCCCATGGCATCATTGTGGTATATGATGTCACTGATCAGGAATCTTACAACAATGTAAAGCAGTGGCTGCAGGAGATTGATCGCTATGCCAGTGAGAATGTCAACAAGCTGCTGGTTGGGAACAAGTGCGACCTCACCACCAAGAAAGTAGTGGACTACACAACAGCCAAAGAATTTGCTGATTCTCTTGCCATCCCTTTCCTTGAAACGAGCGCTAAGAATGCCACCAATGTGGAGCAGGCCTTCATGACCATGGCTGCCGAGATCAAGAAACGCATGGGACCGGGAGCTACGGCTGGAGGAGACAAGCCCAACCTGAAGATTGAAAGCACTCCAGTTCGACAGTCTGGTGGTGGCTGCTGTTGAAGAGCCTCTCTctcgcacatacacacacaaaaacatgcccTCTCTgccctcacatacacacacacttgcatacaTCTAGGAGCATAAGAACAGAAGGTGAAGATGTTCTAACATTCTCATGGGAGTAACCACTGCGTTCGAAGCCAAAGCTTGAGGTTTAACTTTGGCTTCCTTGCATGGAGTTTTGTAGCTTCCTCTATGAGATCCTGGTCCTCTCCTTGCTTTTATACTCCTAGACTCACACCTTATCTCTCTCAACCTTTGTCTTCTCAGACCTTGATCTATTCTTCTACTTTATTCTCACCTGCCTTCAATTTCCACCCATAACCCCAATCCTCTACAGACACAGTGATTTCTGGGTCCCTAGAAAGCTACCTGTCCTATGACCGACAGGTGCAAATTCAGAATAGAAAAGTAATTGGCTTTTGGAGGACATCCTATTTATTATATGCACAGTTGAGGGACGTGAGTGAGGAGGGAATGTTACGTAACTATGTTTGTCATGAGGTCTCTCCCCAGTTTTGCATTCACAGATCCCACACACAAACCCTCGTACACTTGTGGAAGTTTCTTTGGATGTTGAGTGtataaagaatgaaaaacaaaaaatttggcaatattatatatttcatattctgATCTTACtaggattattattaattttaagacTTATTGTAGGTTTTTTcctaatcattattattatataaaagctTACTGCTGTCAAATGAAGGTGTTTGGCGGGGAGGGGGTGGAAAGCTTGATGTCTGGGGTTTAGGCTGGATGACTAAAGCTACTGTTCCCTGTTACCTCATTTAGCTCCTCCCCTGTCATTTGTTTTCAGTGTATTCAGGAGCAggacataaaaaatgttaaatccaTACTGGAACTGAAAAGCCTAGTGGTGGCACAATTTTCTCTTCTGTATTTTAAGTGAAAGTCAGTTGTTGTCCTTCGTCACTGGATGCTTGGTGCAGTAAGGCAGTGGTATACGTAAAATTCATGCAAGTTTTTTGCAGAGCAGTTTGTTTTTGGATTGCAAGTTGagcttttggtttttttattaagttttcCTGGTGTCATGGCTTTCACATATTCCACTCTGTGTAAGCTATTCTGTCTTTTGTCAAAATTACTGTAGTTTTTGGGTTTCTTTTTGTGCAAGATGTCTTAGGTTTGACGTGTGCTTTGACATCTTAGCGTTTTGACGAGCTGGTCCTTTAAAGAATCTGTATAGGCATTGCGCATGGTCCACTGTAACAACTCTGTGTTTGACACAACCCATCATCCCTACAAAACTGTGTGGTTtagaaatgtctttgtatgtgtaCATAAAGTGTAAACATACATGTAGAGGGATTTAATTTGAAATGTCCCATGAAGGTGTGTTAATCTGTGCGTCGTATCAAGATGGAGGATGATGGGACTGACTGGTCTTGGCATAGAGACCGGATATGACCTCCCATATCCTCCAAAAAGCAAAGTGCAACACTCATGTTTAAGTCCATTTTTGCATTAGGCCTGAAATAATCCTTAAAGTAATCTACAGGACCTTCCTCTATTTGGTCCAGACCAGTACAAAAATCTTGTctcaaaaaaatgcatttttggcAGTATGAGGGTTATATATAGGTCATCAGATTAAAGCCCCTCTACTCTCTACTACTCAGTGTGATTTCAACTGCAGATAACATAACAATATCCctttactgaatattttagGTTCAGAGCCCATGAGTAGTCACAGCCTCTGGTGGACAGCAGACAGTGTTTTTGTCATATAGAAAGTGgatctagaaaaaaaacatagatgCAGTTTGTAGAGTTCACTGTTTAAGTGTTGACCTGTCTTAAATGAGTGCACCAGTGTCTTTCATACTGTAATATTAGATTACTAATAAACTGAGCCATTTAAAACTACTTTTAATGCCACTTCAGCCATTGCTAACCTCAGAATAACAACTGTTTTGGGAGATTAAAGACAATGTTTAGTGAGTGACGGGACTGGTGGAATGGGGGTGGAGGGAGCAGTAGCAGGTTGGTGGGGGGTGTACAGGATGGGGTTGGGTTTACTGTATTTAGGAACATTCCTTCTATTTCAATTACATGTgatgtctggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatctatgtctCACTTCAGACCTGTACTCCATCACACATTAAATCTGAGTGCACCCTGTTTCCGACATGttcagaatgtgttttttttttttgccccatgAGGCTTGCTGTTCTACTGATTTTAACCTATGAATTGAGCTATTACATTGTGATGCTGTGTGTCTGATTAATGGATATGGGCCTAGGGGCAATATTGTAGAGGGGTGggacattattaaaaatggGGAGGGCTACTTCTGAATGTGATGGAATTTTGCCGcgtgctttttttgtttggcttttactttttaactttgtttattgttctctctctgtcatttgcACATCTCTATGTTGCTTTGGGTGAGGCATGATGAAGGCACGGGCGACGGTTGTAGCGAGCACCAGGCCGGTAGTTCTTCCCCTCTCCCTCTGCTTGCTCACTCTGGTGCTCTCTTTCATAGCTCAGTTTGatcatgtttttcttctttctgtacatattattataaatatatataataaaaaggaTCAATGTCTTaa

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07874 RAB1A; Ras-related protein Rab-1A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80678 lncRNA upstream 17010 20635348 ~ 20635565 (+) True G68054
TU80554 lncRNA upstream 170820 20480600 ~ 20481755 (+) True G67958
TU80393 lncRNA upstream 376900 20250058 ~ 20275675 (+) True G67827
TU80206 lncRNA upstream 585410 20066030 ~ 20067165 (+) False dock11
TU80695 lncRNA downstream 31708 20692263 ~ 20693053 (+) False G68070
TU80696 lncRNA downstream 31708 20692263 ~ 20693111 (+) True G68070
TU80850 lncRNA downstream 204323 20864878 ~ 20895955 (+) True G68192
TU80969 lncRNA downstream 527976 21188531 ~ 21189134 (+) True G68299
TU80981 lncRNA downstream 545190 21205745 ~ 21209324 (+) True G68304
XM_026935854.2 mRNA upstream 3389 20637228 ~ 20649186 (+) True si:ch73-40a2.1
XM_034304144.1 mRNA upstream 21589 20587613 ~ 20630986 (+) False ehbp1l1a
XM_026935945.2 mRNA upstream 21589 20587614 ~ 20630986 (+) False ehbp1l1a
XM_034304143.1 mRNA upstream 32952 20587612 ~ 20619623 (+) True ehbp1l1a
XM_034304045.1 mRNA upstream 70563 20579774 ~ 20582012 (+) True LOC113539982
XM_026937147.2 mRNA downstream 22153 20682708 ~ 20692222 (+) True rce1a
XM_026937148.2 mRNA downstream 22153 20682708 ~ 20687765 (+) False rce1a
XM_026937256.2 mRNA downstream 75272 20735827 ~ 20739174 (+) True cd248a
XM_026937340.2 mRNA downstream 182789 20843344 ~ 20846978 (+) True LOC113540687
XM_026936148.2 mRNA downstream 192189 20852744 ~ 20893531 (+) False pde5ab
trnaa-cgc other upstream 300090 20352414 ~ 20352485 (+) True trnaa-cgc
TU80337 other upstream 497804 20147795 ~ 20154771 (+) False fcer1g
trnar-ucu_2 other upstream 551477 20101025 ~ 20101098 (+) True trnar-ucu_2
trnah-gug_5 other upstream 823685 19828819 ~ 19828890 (+) True trnah-gug_5
trnah-gug_4 other upstream 824193 19828311 ~ 19828382 (+) True trnah-gug_4
TU80896 other downstream 359703 21020258 ~ 21033753 (+) True G68232
XR_003404073.2 other downstream 666791 21327346 ~ 21327420 (+) True LOC113540699
XR_004577949.1 other downstream 968521 21629076 ~ 21639890 (+) True mettl4
XR_004577950.1 other downstream 968521 21629076 ~ 21639890 (+) False mettl4
XR_004578015.1 other downstream 1091861 21752416 ~ 21762301 (+) False LOC113540377

Expression Profile