RNA id: XM_026936345.2


Basic Information

Item Value
RNA id XM_026936345.2
length 4481
RNA type mRNA
GC content 0.44
exon number 12
gene id yes1
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22999911 ~ 23038154 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTTTaacgtctgtttttttttttttccctccttctttACCACTGTTTGGTCTCCATTTCTCTTCTCCTGTTAGTGACGCGACCGGATTTCTATAACGGATTTCATCAGCAGTAACAATAACAGGCAGTTTGGGTCGTTTCGCAGGGGTTGTGTGAAGCATGGAAAAAACAGCGCGGCTGACTGGGATTTTAATTGTGTAGCAAACAGTTGCACTTTTCTGTGTCTGCCGAGTGCCTGAGAGTCAGAAGAcgtatgaaaataaaagaagacaGGTTTGTGTGAAGGCTTGATAATGGGCTGCGTCAAAAGTAAAGAGGACAAAGGACCATCGCTGAAGTACCGACCAGATGCTTCTAACCCTACCCCTGTTCCCTCCCACATGGGCCACTATGGGCCAGACCCCACCCAGATGGGCCAATCACCTGCCGTCAAGGGTCCCAACAGCAGCTACAACAGCCATGCCTCCACCATCACTCCATTTGGTGGCTCGTCATCCGTCATCACTCCCTTCGGTGGAGCCGCTTCTTCTTTTTCCACGGTGACCGTGAGCAACCCCTTCCCTGGTGGCGTCACAGGTGGTGTGACCTTTTTTGTGGCCTTATATGACTACGAAGCTAGGACATCTGATGACCTCTCATTCAAAAAAGGCGATCGATTTCAGATCATCAACAACACAGAAGGAGACTGGTGGGAGGCTCGTTCCATCAACACAGGCAAGAAAGGCTACATTCCCAGCAATTATGTGGCCCCTGCAGACTCCATCCAGGCTGAAGAatggtACTTTGGGAAAATGGGACGCAAAGATGCTGAGCGACTGTTACTGGTTCCTGGAAACCAGAGAGGGACGTTCTTGGTCAGGGAGAGCGAGACAACGAAAGgAGCCTACTCTCTCTCCATACGTGACTGGGATGACATGAAGGGCGACAATGTGAAACACTACAAAATCCGCAAGCTTGATAACGGTGGCTACTACATCACCACAAGAGCCCAGTTTGAGACACTGCAGAAACTGGTCAAACACTACACAGagCATGCAGACGGACTCTGTTATAGGCTCACTACAGTCTGTCCGACTGTGAAGCCTCAGACTCAGGGCCTGGCTAAAGATGCCTGGGAGATCCCACGTGAATCGCTTCGCCTGGAACTCAAACTGGGCCAAGGCTGCTTCGGAGAGGTCTGGATGGGCACTTGGAACGGTACTACTAAGGTGGCGATTAAGACGCTGAAGCCTGGCACCATGTCCCCCGAGGCCTTCCTTCAGGAGGCACAGATTATGAAGAAGCTCAGGCATGACAAGCTAGTGCCTCTGTATGCCGTCGTGTCTGAGGAACCCATTTACATTGTGACTGAGTACATGGGCAAAGGGAGTTTGCTGGATTTCCTAAAGGAAGGCGAAGGTAAATACCTCAAGCTTCCCCAGCTAGTGGACATGGCAGCACAGATCGCTGATGGCATGGCCTTCATCGAGAGGATGAATTACATCCACAGAGACCTGAGGGCAGCCAACATCCTAGTGGGAGAAAACCTGGTTTGCAAGATCGCTGATTTTGGCCTGGCCAGGCTGATTGAGGATAACGAATACACTGCTAGACAAGGAGCCAAGTTCCCCATTAAATGGACAGCACCTGAGGCAGCTCTCTATGGCCGCTTCACCATCAAATCTGATGTCTGGTCTTTCGGTATCCTGCTGACTGAGCTTGTCACCAAGGGCAGAGTGCCATACccagGCATGGTGAACAGGGAGGTTCTGGAGCAGGTAGAGAGGGGATACAGGATGCCATGTCCTCAAGGCTGTCCTGAGTCGCTGCATGAGATGATGCGTCTGTGCTGGAAGAAGGACCCTGACGAGCGACCCACTTTCGAATACATCCAGTCCTTCTTGGAGGACTACTTCACAGCCACCGAGCCGCAGTACCAGCCTGGAGACAACCTGTAGAGCCGTCTGCCTGGTCCCAAACCAGCTTGCTGCTTCCTCCCCTAAACCATCCGTGCACACTTCCTATCCCTCTGACTTCTgtcttgttattttgttatatttgcaGTGGTGTAGGAGGCACCATGTAACACCTTTTGGATTTCGTTAACCCTCTGTTGAGTTCAGGATAAGTGTGAAGTGAAGTTCGGTAGGGAAGCAAGCATGTAGGTTTGGAACAGATAGGGAGCTGCAGAGAAAGTAATGACCATAGTGCTGATTGCATAAATGTCtgttttcatgttctttttttttttttttctctttattgttTTAGTTTCCACACAAACACTATGATTTCTGACTGTTTTAAGATCAAGAACtgatttctttttgttgtttattgtcatcgatttttactttacatttcacttcctcttttttttttcattaatttcaatagtttgttttaaaaaagtgaccAATAACTGTGGTTGAAAACGACGGTATCGCCTAAGACTGTCGGTGATGCTGTGACAGAGAGAGGGcgggagaatgagagagagagaatgaaagagagagagaatatttgCCATTATGAATGTATGAGTAAAGCATAAGCAGTGCAAGAGCTGGAGGAGATAGATGCAAAAAGAGTTTGACTTTGTAAGTTAAGATAGTGGTGGAAAATAAATGGGTAAGatttttatgaatgaatgaaaaaaacaattttttttagtaatctgTTATTACTTGATCCATCATGATTGATGATTTATATTTGTGAACTTCTCTTGTGCCAGCCAAAAAACTATTTGAAGAGTGCACTAACTGTACACTAAGATGATGATCcccttgtcatttcagccaAGTGCCAgttctgggaaaacctgtttaATAATTTGTGCACATGATATTTGTACTAAATTTCATTGTTTAATGGAGTCTGTAAATTCTACTACTTCTTTCACTGGAATGATACTTCCAGGAGCTTGAATTATATGTATTCCTACCATGGATCATATAATGCACATCATTTTGTCATCCTGTAGTAAAACACTACAGTTGAGCCCAACACTAAACACTTCAAATCTGCTCAAATGTTTAATCTCTTTTGGAAAAAAACTAGCTTTGTTATGCTGTGTGAGAAATTTtgggtcactgcaaatcaatacaaagatCACCTTTatcttatgatgaaacatttctgtcctgatgggtgtggtctctcTTAGTATCCACAAGGCACGAGGTTCACTGAATAAtttaatgaggatgaaaattatGCTACAGCCTTCACAGTCACCCATTCTCAATTCAGCTGAACACCTACGAGAGCTTTTGGAGCGATGTGTTAGACAGAGCTCTCCACCACTAGCATCAAAATACCAATCTTTTCGAAAAGCAATGTTGAGTCTCTAGAGTACTGTTtaagagacttgtagaatcgaTGCTGAGATGCATTGaggctgttctggtggctcgtgGTGGATCTGATTTGTTCAGCtgattttattacttttcattATAACAGCACCCTTCAATATGCCATTTCAGATGATATTAGCTCTTCAGCTTGACAGTTCTGTattcatttatgatttttagtGTTGGAATCAACTATAGAGTCTACCTGATTTGTTCATACCGTGTTATGACAAAAGCAAAGTTAATTTCATGGAGAAATAAAATCCCTACATTTCATATTGGAACAGAACGTTTTGCGTTTGTATCACTGAGATACATTTATGAATAGATGAAATCCCACAGCTCTGTCTGCTTTGTCATGCTCCCAGCTTTCCGAGGCTGCTGAATCACTTCCTGCAACTCTGTCGCCCTCCACCGGTTGATGATTAGAATTATAATGGGAGATGTTATGGCTGTTATACTTCCACTGGCTGACATGAGTGCTGTAAAACACAAGTGCTGAAAGAGATGGCAAAAAAGGTGGTCTTTTAAAGTGGTCTTTCAACACTTCCTGGTGTTTAATTTTCTCCTTTCATACTGTCAATTCAATGGAATGGCTGCAGTTGAATTGAGCTTGGATGCAAATCTATAAATGGAAATTTAGTTGGTGTTTAAAGCAGATAAGACTGGTCAATTATTAACAGTCCATTACCTCAGTAAGAGTTTTTACAGAGTAACACAGGTGCTGTATGGAGTTGGTTTCTGCCAGTGGTTCTTGACATAAGTTTAAATGCACTTCATGTGAACCAAACACTAGCATTGTGTAAAAGTAAAGCTGAAAAGCCTTTTGTGAGTAGAGAGGTCTTACCTTTGTTCTCCTGCGTCATTATCCCTTTGTTTCGGTCGAAGGGGTTTTGTTATAAGAACAAAcccctcctccctctcttttcCCAGAAATCTGTGTGGTTTTCAAAGGGCTATGGACCAGTTTGATgaatttcttttgttctttcatgGAGATATTTGAAGAGGAGAACTGATACGCTTTGGCTGCAGGGTTGAAGCAGAGTATGGAGGTTGTGTGTACCGTCACGTTGGCAACAAATTACTAACCTGAATAATTTgtacagtgaaaaataaagttgtaCGTAATGCTTTTGA

Function

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0045859 regulation of protein kinase activity biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0046777 protein autophosphorylation biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0005829 cytosol cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004715 non-membrane spanning protein tyrosine kinase activity molecular_function

KEGG:

id description
K05705 YES1; tyrosine-protein kinase Yes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404049.2 lncRNA upstream 61170 22926810 ~ 22938741 (+) True LOC113540593
TU82061 lncRNA upstream 347464 22649943 ~ 22652447 (+) False LOC113540463
TU81842 lncRNA upstream 472355 22527328 ~ 22527556 (+) True G68999
TU81788 lncRNA upstream 602810 22392839 ~ 22397101 (+) True G68954
TU81789 lncRNA upstream 612166 22383094 ~ 22387745 (+) True G68955
TU82369 lncRNA downstream 246400 23284554 ~ 23284926 (+) True G69443
TU82375 lncRNA downstream 253256 23291410 ~ 23291998 (+) True G69449
TU82453 lncRNA downstream 292879 23331033 ~ 23331529 (+) True G69514
TU82463 lncRNA downstream 329507 23367661 ~ 23368677 (+) True G69522
TU82521 lncRNA downstream 409309 23447463 ~ 23457206 (+) True G69570
XM_026936107.2 mRNA upstream 162072 22808862 ~ 22837839 (+) True lpin2
XM_026936106.2 mRNA upstream 162072 22812620 ~ 22837839 (+) False lpin2
XM_026936914.2 mRNA upstream 193977 22776639 ~ 22805934 (+) True myom1a
XM_026936916.2 mRNA upstream 193977 22776640 ~ 22805934 (+) False myom1a
XM_026936082.2 mRNA upstream 225157 22770973 ~ 22774754 (+) True bag1
XM_034303646.1 mRNA downstream 16346 23054500 ~ 23103788 (+) True LOC113540574
XM_026937129.2 mRNA downstream 67469 23105623 ~ 23109703 (+) True si:dkey-32m20.1
XM_026936910.2 mRNA downstream 86026 23124180 ~ 23144086 (+) True cacnb2b
XM_034303413.1 mRNA downstream 143716 23181870 ~ 23201969 (+) True si:ch211-106h4.4
XM_034303415.1 mRNA downstream 148632 23186786 ~ 23201969 (+) False si:ch211-106h4.4
XR_004578015.1 other upstream 1237610 21752416 ~ 21762301 (+) False LOC113540377
TU82445 other downstream 280350 23318504 ~ 23320343 (+) True G69509
TU83028 other downstream 1070641 24108795 ~ 24109889 (+) True G69971
XR_003403979.2 other downstream 1820872 24859026 ~ 24871263 (+) False kif2c
XR_003404013.2 other downstream 2669673 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 2859981 25898135 ~ 25901843 (+) False LOC113539772

Expression Profile