RNA id: XM_026936354.2


Basic Information

Item Value
RNA id XM_026936354.2
length 2080
RNA type mRNA
GC content 0.40
exon number 11
gene id casp23
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16125016 ~ 16129309 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAACTCGATTTGCGTTTTGCAACGGAAGAACTGTTCGTCGTGCTCATGTATGCTGCCGGCTCAAAGGTGTGAAATAGTGATTTTACAATCGTGATATCTAATAAGgatatataatattgtaatattttcgAAGTGATCGGAAGGGGTGAAATTAAAACTTCTAGcacaaaaaaatgtcacaacCCAAGGAAGAGGACAGAGACTCAGAAGATGCTGCACCTCTACCACATTTCCGTAACCTAAGAATCTCAGGTGATGAACAGAAAAGAAAGTCTGATGTCTTGCCTGGAAAAACTGCTGTTTTGTCCTGTGGTCATCAAATGCCATTGGATTACTTGATTTCATGGTGCAAGTACTATCTAAAGCAGGAGAAGACTGAATTCACTTGCCCAAGATTTGATGAGTACAAGAAGGGTATATGTGGCACAAAATTCTCTTATCAGGACATGTGCCATACAGTTCCACTAACTCCCTCACTGAAGGAATTCTTCGAAGAGAGACTTGGGGAGCTAACTGCAGCAAGATTCTGTGAATTTAAAGCTTGCCCAGGATGCCAGTCGTATGTGGAGAGAGCTGATCAGAAGAACCTGTGTGTCCACTGTACTGTATGCACTGCCAGGATGGGATGCTCCTATGAGTTCTGCTGGAAATGCAGGAGGAAATGGAAAGGAGCAGCACAAAATAATGTGCACTGTGGCTACAATgactgcagacagacagagACTTctcaaaaaaagagagatttgaTAAAGTTATGTCAGCCTGCATTCAAGATACAAAAGCTTCAGACAGAAGAGATCTATTCAACAAAGGAGAAATCCAATGACAGACAGCGACTGGCTATGATCATCAACAACGTTGAATTCAGAGTAAAGAACCTTAATCGGAGGGGAGCAGAGAAGGATGAAGAGAGTATGAAGTCTCTGCTTGAAGCCTTGGGTTATGGTGTAATCATACTGAATGACCTGTCTGCAGCgGGGATGGAGGCTGCCTTGAGAGACTTCTCACAACATAAAGAACACAGATATTCAGACAGCACATTTTTTATCATGATGTCCCACGGTGGACCTGATGGAATTTATGGCATTAATTTTGATGACAAAGAAGGTGACATTCTCCCTGTGGACAGAATCTTCCACTATCTCGGCTCTGAGAACTGCCCCGGACTAACAGACAAGCCGAAAATCATTCTGATTCAGGCATGCAGAGGAGATAAAGAAGGCCATGTGTGGGTATGTGATGGTGTAAGGTccaataaaggaataaaacaacaccGTGAGAAAGATTTTGCCTGCTTCAGATCCTGCACACCAGACACTGTATCCATCAGGAATACTGGCTCTGGTTCATTATTCATTCAGAGCCTTGTTAAAATCTTCAGTGAACACGCTCATGAGGACGACATAATGGAACTGTTCAGAAAGGTTGCTCACTGGTTTGAAAAAGCAGCAAAGGAAGATGAATTTCCCTATCAAATGCCAAGTTTGGACAGAACTACtcttgtaaataaattttacctGTTTCCTGGACTTTGACACAAGAGCTCAGGTTGCTGCCATTTCCTTAAGAATTAATTGGTCTTTGTAATATAAGGGTTGAATGTTTGAATTGAAGTAATATTTCCCTTATTATGTTATACAATAAATATGAACTGTACACACCTATTCAGTGCAGATGAAAACATTTCTATATCTTTAACATGGAAGAGACACCAATAAGCTGCTCTGATGTACACCCCATCTAAGTACAAGAAGGACTTTTTGCTCAGAGGTTTGTGTTTCTTCATCAAGAGTTAAAGGTTTGATAGACAAACTTGTCTTTCATGCAGAAAAACATTCTTTTCTGTAGGAATCATTCATTTTATATGAACAAAACTGTGGGTACAATGGGTTAATTTTTGTATAGAAAACCTGGGATCTCTCTACAATATTTTGCAGAAGGATGATGAAAATGAAGCAGTaatcttaaataaatctttatatcTTCATCTTTATTGAGTGTTcagctatattttatttttcatgttcctAGAGGCTATATGTAGAGTGGCCAATAAATGAGCCTttttgagttgtcccaa

Function

GO: NA

KEGG:

id description
K01370 CASP1; caspase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77172 lncRNA upstream 61555 16062088 ~ 16063461 (+) True G65199
TU77152 lncRNA upstream 69871 16019857 ~ 16055145 (+) True G65184
TU77137 lncRNA upstream 123555 16001155 ~ 16001461 (+) True G65170
TU77079 lncRNA upstream 254245 15869198 ~ 15870771 (+) True G65115
XR_004578089.1 lncRNA upstream 568092 15506292 ~ 15556924 (+) True LOC117597190
TU77337 lncRNA downstream 94109 16223418 ~ 16231115 (+) True G65335
TU77409 lncRNA downstream 262820 16392129 ~ 16392363 (+) True G65382
TU77422 lncRNA downstream 301152 16430461 ~ 16430686 (+) True G65395
TU77544 lncRNA downstream 302636 16431945 ~ 16442900 (+) True G65495
TU77609 lncRNA downstream 385328 16514637 ~ 16514841 (+) True G65542
XM_026936352.2 mRNA upstream 4697 16109037 ~ 16120319 (+) True slc7a7
XM_026936351.2 mRNA upstream 4697 16109038 ~ 16120319 (+) False slc7a7
XM_034303659.1 mRNA upstream 6173 16108976 ~ 16118843 (+) False slc7a7
XM_026936829.2 mRNA upstream 17279 16098883 ~ 16107737 (+) True si:ch211-212k18.5
XM_026936826.2 mRNA upstream 17279 16098968 ~ 16107737 (+) False si:ch211-212k18.5
XM_026937082.2 mRNA downstream 6055 16135364 ~ 16139870 (+) True LOC113540526
XM_034303835.1 mRNA downstream 16115 16145424 ~ 16152437 (+) True LOC117597111
XM_034303466.1 mRNA downstream 68392 16197701 ~ 16204202 (+) True LOC117597006
XM_026936368.2 mRNA downstream 127356 16256665 ~ 16264197 (+) True tkfc
XM_026936367.2 mRNA downstream 134945 16264254 ~ 16277494 (+) True si:dkey-9k7.3
XR_003403994.2 other upstream 85032 16023195 ~ 16039984 (+) False LOC113540079
XR_004578093.1 other upstream 1466080 14632030 ~ 14658936 (+) False zgc:194930
XR_004578085.1 other upstream 1855676 14255744 ~ 14269340 (+) False brms1
XR_004577999.1 other upstream 2405562 13705576 ~ 13719454 (+) False gc2
XR_003404009.2 other upstream 2562750 13558623 ~ 13562266 (+) True cited1
XR_004578074.1 other downstream 180904 16310213 ~ 16319166 (+) False LOC113539780
XR_003404046.2 other downstream 238647 16367956 ~ 16370684 (+) False LOC113540582
XR_003404110.1 other downstream 631210 16760519 ~ 16760583 (+) True LOC113540740
XR_003404111.1 other downstream 631440 16760749 ~ 16760819 (+) True LOC113540741
XR_003404115.1 other downstream 631672 16760981 ~ 16761107 (+) True LOC113540745

Expression Profile