RNA id: XM_026936363.2


Basic Information

Item Value
RNA id XM_026936363.2
length 4065
RNA type mRNA
GC content 0.45
exon number 13
gene id cacnb2a
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 21849641 ~ 21914232 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTGCTGAGAGAACGCAGAAGAGagggacaagagagagagagagagagaaagagagagagagggacgaaATACAGGATGCAGCCCATAACAACATCATATGCAGAGAGTAGAGAGCTTGAGACACATACACCCGGtgagaggatggatggatagagacTCCAGGGCAGGGACCAAGTGAGAGTGGCTGACTGCAGCACCTGTGAGCCGCAGCAACAGCATCATTAGCATCTGCAGCTCCACAATCCTGGACCTGCTTTCTCATTTCGCGGAGCATGGCAGCCTGGCCTTGTTAATTGAATGAGGATAATACGAACAGCAGCCTGTGCAACAGCTTCTGCAGCCCCTCTTCATTCAGCATGCGCTGGGAGAGTGAGAGAACACGCTCAAGTGGAATCACTGGCGGCCGTCGAATACAGCATAACACGAGCAGCGCGAATCTCTGTTCTCACAGCAACAGCAGCCGTACAACTAACGCTCTTACTGTTAGTTCCAGCAATAGTAGGGACATCAGGTAGCACAGTAATAAGGTTGCAGGGCAGGTGTAGCTTTTAAAATAGCAACAGTGAAAggttgtaatttaaaaaaaaaaaaacatatcagagTATCAGAGTAGCTCTATTGCAATGTTGCATTTGTATAAGtacattaaattacttttagtgatagttgttgaTCTGTAATTACTATTTGTGGAATACTCTAAAGGgaattcagtgttttttgctATATTTACAATAGTAGTAGCATCAATATCGTTGGTATGAAGTGCTGACATGCTTTAAGATTTAGTTTAAGTGTGTAGTAATTTGTTGTCATCACTTTAGCATAGTGATTAGTGAGTGATAGCTCCTGTTGTGTGATTGTAGTTAGTGTGTCAGCTGTGTTTGTGGTTATGGTGAAGAGAGCGAAGGCTCCATCCATTTTGGCTGATGAAGGCCTCCTGGATACGGCTGCTGAAAAGAGCAAAGGGGGGTCGAGTCAAGAACGATATTGGCGGTTCGGCAGACTCATACACCAGTCGACCGTCTGACTCGGATGTGTCTCTAGAGGAGGACAAAGAGGCACTGCGCAGAGAGGCTGAGAGGCAGGCCCAGCTCCAGCTCGAAAAGGCCAAGACAAAACCAGTAGCGTTTGCTGTTCGCACAAATGTTAGCTACAGTGCTTCCCTCGACGATGATGTCCCCGTGCCTGGCATGGCCATTTCATTTGAAGCTAAAGATTTCCTACATGTAAAAGAGAAGTTCAATAATGACTGGTGGATTGGCCGCTTGGTGAAAGAAGGATGTGAGATTGGTTTCATCCCCAGTCCAGTGAAATTAGAAAACCTTCGCATCCGCCAGGAGCAACGAGCCAAACAGAGCAAATTCCACTCCAGcAAACTGGGGGCTAACTCCTTGTCCAGTTTAGGGGACATTGTCCCAAGCTCTCGAAAGTCTACTCCTCCCTCCTCAGCTAAGCAGAAGTTGAAGTCGACTGAGCACGTCCCCCCATATGACGTGGTGCCCTCCATGAGGCCCGTGGTCCTGGTGGGACCCTCACTCAAGGGCTATGAGGTGACAGACATGATGCAGAAAGCGTTATTTGACTTTCTGAAGCACAGATTTGAGGGAAGGATATCAATCACTCGGGTAACAGCAGACATTTCTCTTGCCAAGCGATCTGTCCTGAATAACCCCAGTAAACATGCCATCATTGAACGCTCCAACACACGTTCCAATCTTGcTGAGGTACAGAGTGAGATTGAGAGGATCTTTGAGCTGGCACGCACGCTGCAGTTGGTGGTTCTGGACGCTGACACAATAAACCATCCATCTCAGCTGAGCAAGACTTCGCTTGCACCAATCATCGTCTACGTCAAGATTGCCTCTCCAAAGGTGTTACAGAGATTAATAAAATCTAGAGGAAAGTCTCAGGCGAAACACCTCAATGTGCAGATGGTGGCAGCAGACAAACTGGCTCAGTGCCCTCCGGAACTTTTTGACATCATCCTGGATGAGAATCAGTTAGAGGACGCCTGTGAGCACATGGCCGACTATCTGGAAGCTTACTGGAAATCCACACACCCGGCCAGCTGCACTCCGGCCAATCCTCTCTTAGACAAACTCACTGCCACCCAGTCAGCCACTCCTGAGCCTCTGTCTAGTCTGCATCTGCAGGGCACAGGGGGCGCCCAGAAGGCCGAGAAGTCACTAGACGAGAGGAAGAGCTCTCTAGAagatcatcaccatcaccaccaccatcaccgtCACCACCATCGCCTGCAAAAGCAAGAGAGCCTGGACCAAGCTGAGGAAGACGATCCTCAGGAAGAGGCTGTTAAAGAACAGAGAGTCTTACGGAGTGAGCGAAGAGCACCGCACATACACCACCGCTCTTCATCCACACGGACCGAACACCAcaatcaccaccatcaccatcatcaccaccaccatcacagtCACACAGCACGCACACTCTCCAGGCAAGAAACGCTGGAGAGCAGAGACTCTGCATGTGCAGAgccacacaccactcacacacactcagatctGCCCACACACTCGCATACACGCCACACAGGGGAGGAAGAcgaagaggatgaggatgaggacgaggacgaggaggaagaggagggggaggaggatgaggaggaggaggaggaggaggaagaggaagatcaGCCTGTTCAACATAACCATCATCAccgccatcatcatcatggaaaggaaggaagagaaagagagcgagagcacGATCACAGTGAACGTAATGGCCGGCAACGTGGACAGCAGAGATCACAACGAGAACGCTATCATGAGCGTGAAAGGCAACACTCTACtgaaggagaagagaaaaaagaagaaacagacTGGGAGACTGATCCCTACATAGAGCAGTAAcgcacaaagacacacacccATGGACTGCACTGAACAGACAAAACATACACCTTTATAAAAGCTAGATACAGGTCCAGAATTATTGCCAACCTTGATCAATGTTAGTGAAAACAAACAGGgaacatttaaaggtgcagtttgtaatgtttaaatgtgtttcaaGCCTATAATAATTAGATCATTTCAAAGATATGTTATAGAAACTGTGATGTGCAATATTGCCATGTGATTGATTTGGCTAGTAtcttcatttcaggcttctCTTTACATTTTTCGAGCCTGGAAATGAGCTCCACCTCCCAAGCCAGAAAAAAGCAACACATGATGGAAACATAATTTTAGGAGAGGGAGTTTAGAGGAAGAGAAGGCTCATCAGTGTTTTCATTGATTCATTGTGATTGACCTCACATACAGCAGAGGGCttgaataattacaaactgctcctttaatacTGAGATATGTTGTTTTGTAATGTTCTATCTTGTTGTCATTCTGGCAAACCATAAAAGTTTGGCAATGTTGTTATAAATCAATGGAATAAACAAAACATCTTCAAAACAGAAAGTTAGGCACATTGTATACCCTCCTGGATACTGTGTCTATCATTCCAAATATTATTATAGTGCACATTTTGAGGGATTATGGGTTACTTGTCCATACAGAGACTTTTAGTGTTGTGCCTATGAACTGCCAAAATCTGTGGCTATGGTTCTTTTTGTACTTTTAGGCTGCCAGGACTGAGTAATCAAAGCATCAACTAGTCAAAAATTTAAGTTTCTTTGAATGCCACAAACACCAGTGGTGTAGATGACACATGGGGTCAAATTTctgttttggtctcatctgCCATATGTTCCAGTTCACTTTAGGTTCAGGCTCATTGCAAAGAATAAATATGTAGTAATAGAAATTAAGatatagaaaatagaaaattactAGAAAATTATGAAGCTAATAATGCTAATTCTGGGCCTGTCACacctcacacatatacacacatacaccatgtGCTGCTATCCTGCCCTCTGGACTTTTGGCTCTCTGTTACTATGCCTCCTTTGTAAAGACTGGTGTTTTTAAAGATGACTACATTATTGTAAATAAGATATAGGTATCCATGCATACTTGTTCTATCAGTGTGTGGACACgtgaatattaaacaataaatatgagTCATTAATAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81415 lncRNA upstream 121979 21754108 ~ 21762282 (+) False LOC113540377
TU81416 lncRNA upstream 122032 21754108 ~ 21762229 (+) False LOC113540377
TU81417 lncRNA upstream 134942 21732946 ~ 21749319 (+) True G68621
TU81294 lncRNA upstream 396773 21486974 ~ 21487488 (+) True G68523
TU81189 lncRNA upstream 562855 21321145 ~ 21321406 (+) False plag1
TU81502 lncRNA downstream 574 21914806 ~ 21917776 (+) True G68687
TU81775 lncRNA downstream 330356 22244588 ~ 22244825 (+) True G68947
TU81789 lncRNA downstream 468862 22383094 ~ 22387745 (+) True G68955
TU81788 lncRNA downstream 478607 22392839 ~ 22397101 (+) True G68954
TU81842 lncRNA downstream 613096 22527328 ~ 22527556 (+) True G68999
XM_026936381.2 mRNA upstream 40377 21829024 ~ 21843884 (+) True LOC113540130
XM_034303784.1 mRNA upstream 40377 21829024 ~ 21843884 (+) False LOC113540130
XM_026936379.2 mRNA upstream 55422 21807724 ~ 21828839 (+) True mrc1a
XM_026936380.2 mRNA upstream 55423 21807725 ~ 21828838 (+) False mrc1a
XM_026936150.2 mRNA upstream 91060 21787190 ~ 21793201 (+) True LOC113539992
XM_034304043.1 mRNA downstream 20260 21934492 ~ 21945588 (+) True arl8
XM_026937183.2 mRNA downstream 60511 21974743 ~ 22035561 (+) True malrd1
XM_034303946.1 mRNA downstream 130784 22045016 ~ 22163581 (+) False plxdc2
XM_026936701.2 mRNA downstream 130785 22045017 ~ 22163581 (+) True plxdc2
XM_034304011.1 mRNA downstream 256100 22170332 ~ 22184685 (+) True nfx1
XR_004578015.1 other upstream 121960 21752416 ~ 21762301 (+) False LOC113540377
TU82445 other downstream 1404272 23318504 ~ 23320343 (+) True G69509
TU83028 other downstream 2194563 24108795 ~ 24109889 (+) True G69971
XR_003403979.2 other downstream 2944794 24859026 ~ 24871263 (+) False kif2c
XR_003404013.2 other downstream 3793595 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 3983903 25898135 ~ 25901843 (+) False LOC113539772

Expression Profile