RNA id: XM_026936375.2


Basic Information

Item Value
RNA id XM_026936375.2
length 2358
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC113540125
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28253028 ~ 28260254 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACACTAGCATTTCACTTCCCTTCCCCCAGCACACAGTGGTGGTGCGAGGACAGCAAGGCATCGCGGCGTTCAGCAGAAGCGCAGATGAATGCTTTGTAAAGGAGCAGTGGATAAAAATAGACTTATCAGAGACAGCTGCAGAGGAGAGGAAGGAGCGAAACGGAGAGGAGCCGAGAGAACGCACAAGCATGAGCGAGGAAAAAAAGCAGACCGTTCTGCCTAGCAACACACACCGAGCCGTAAAAAATCTCTGCTCCAAGCTCTGGACTTCTTGATTTGGGTTTCCACCCTCAGAAGTGACTAATATGTATGAGGCGGAGTCTTGAAAAACACAAGGCACATTCTCAGCTGAAGGGAAAGGAGCgtttaggggggaaaaaaacaggctttCGGAAGGGATCTGAAAGCAATAGCAGCATTAAACTATGTGGATGGGAAAGTGGCATGAGTCAAGCTGCCAACATGTGCTGGTAAATACGAGGCACACCCATGGCGAACGCGGCGTTATCACCGAGTGCCAACATCCATGCTGAGAAAGGTCTTTCATCCACTGAACGGACCCGAGCAGGAGAACCATGCAGTGTAGGCGTCGGCATTGCTACGCAAGAATCGCGGGATTACTCGCTTTTCTGGTATGCGTCGTTCTGATCATCTTCGCTCAACACGTCTGGCTAACGAGGCTGAAAAGCCGCATCATGATCGAGTCGACCTTCAAGAAAGAAGCAGCGACGCCTCCTTCGCCAACGAGGTTCCTGGCAAACGGTACCCTTGTTTCTACGCAGCCGGTGTTCAGGACCTCCGTGGGATCTAACCGGAGTTTAGCCAAGGAAGAAAACGCAGAAAGCATCCTTAAAGTAGAACCCTACAAGTACGTCATCAACGAACCTGACAAGTGCAGGAAAAATAACACTTTCCTAGTGCTGCTGATCCCAGTCGAACCTCACAATTCCGAAGCCAGGAACGCCATTAGGAACACGTGGGGCAACGAAAGCATGGCTGAAGGAATAGTACGCCTCTTTCTACTGGGTGTGAAAAACACTACGCGTGATCCCGGGATGCGCGATCGACAGCAGCGCTCCCTCATGGCAGAAAGTCAACAACATCGCGACATGATCCAGCAGGATTACATCGACTCTTACTACAACCTCACTATCAAGACGTTGATGGGCATGCACTGGGTGTCGAGATACTGTCCAACCGCCAAGTACGTAATGAAAGCGGACAGCGATATGTTCGTAAACACGGAGTATCTCATCCAGAAACTGCTCAAATCGAACATTCCGAGGGAGATGTACTTCACCGGGTACCTCATGCGAGGCTACAAGCCGAACCGAAACAAGGACAGCAAGTGGTACATGCCGCCAGAGCTGTACCCTAGCGGAAGTTACCCCACGTTTTGCTCGGGAACCGGGTACGTCTTCTCCGGCGACATGGCGAAGAGGATCTACGCCACTTCCCTGAGCATACGCAGGTTGCACCTGGAAGACGTCTACGTGGGACTCTGTCTCTCGAAACTGAACATAGAACCGATGCTGCCGCCCAACGAGTTTCTATTCAATCACTGGAAGGTTTCCTATTCCAGCTGCAAATACAGCCAGCTGATCACCTCGCACGAGTTTCGTCCTAGCGAGCTGATCAAGTACTGGCAGCACCTCCAGAAAAACAAGGACAGAGCCTGCAAAATGTCCAAAGGTCAGATTGCGAGGAACATGAATGCAGAGACGCTTCATCGGGCCAAGGTTTTGCTTAATCCCCAGTTATAGTGAGATAGTAATCTTTTTGTTCAGTTATCAGTGTAATCTCCAGCACCAGTGTTACCACGGAGAGTTGTTGGGAATTATTGCTCGTTATGTCATCAGGCTGAACTATTTTCATTAGGAAATGCTGTGTtgtatcacaaaaaaaaaaaaaaatgaaatgataaggATCCCTGAATATAATTAAACACTGTTTGTAAGTGCTCTTATGTGATCATTcaaattttctttcattttgaccactaaattaaaaaatttaaattaaaaaattaagaaaatttgAACAATCTCAACCCGATGAAAACAAACTAAATCTACTCTTCCGTCAGGACTGAGGTGTACTGAAGTATCTGTAAGTTATTAGTGAAGTAATTGTAATTTATTGCAGTCACACTTTTGGGTTAAGGCTTCAGAAATGCACTCGATTGAACTTGTACATCACATCTGCTTTTGAACTGTGGCTCGAAATGTTGACGtctgcttattttttattactatttcattttaaaaaggtttttctATGCACTTCGAGGTTTACACACCACAACAACCTCTCTCTTTTTcgtttcctttaaaaaaaaaaaaagctgcttacACTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85674 lncRNA upstream 130886 28114451 ~ 28122142 (+) True G72276
TU85626 lncRNA upstream 240569 28011744 ~ 28012459 (+) True G72236
TU85492 lncRNA upstream 693601 27556204 ~ 27559427 (+) True LOC113540592
TU85491 lncRNA upstream 693926 27556204 ~ 27559102 (+) False LOC113540592
TU85711 lncRNA downstream 42597 28302851 ~ 28383408 (+) False insig1
TU85733 lncRNA downstream 56150 28316404 ~ 28328181 (+) False htr5ab
TU85742 lncRNA downstream 208694 28468948 ~ 28471765 (+) True G72336
TU85789 lncRNA downstream 314668 28574922 ~ 28578950 (+) True G72378
TU85820 lncRNA downstream 359570 28619824 ~ 28637201 (+) True G72404
XM_034303981.1 mRNA upstream 100523 28112849 ~ 28152505 (+) True zbtb41
XM_034303982.1 mRNA upstream 100523 28139717 ~ 28152505 (+) False zbtb41
XM_026936391.2 mRNA upstream 100523 28139718 ~ 28152505 (+) False zbtb41
XM_034303983.1 mRNA upstream 142021 28104505 ~ 28111007 (+) True pfn2l
XM_034303984.1 mRNA upstream 142021 28104508 ~ 28111007 (+) False pfn2l
XM_026937128.2 mRNA downstream 56150 28316404 ~ 28338173 (+) True htr5ab
XM_026937188.2 mRNA downstream 116060 28376314 ~ 28383422 (+) True insig1
XM_026936218.2 mRNA downstream 133682 28393936 ~ 28400141 (+) True en2a
XM_034303331.1 mRNA downstream 133682 28393936 ~ 28400141 (+) False en2a
XM_034303603.1 mRNA downstream 183524 28443778 ~ 28468852 (+) True rbm33a
trnat-ugu_8 other upstream 631645 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 632351 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 695126 27557765 ~ 27557902 (+) True LOC113540696
XR_003404069.1 other upstream 696380 27556517 ~ 27556648 (+) True LOC113540695
trnat-ugu_5 other upstream 763703 27489253 ~ 27489325 (+) True trnat-ugu_5
TU86406 other downstream 614102 28874356 ~ 28912104 (+) True G72873
TU86682 other downstream 1359739 29619993 ~ 29623037 (+) False asip2b
TU87615 other downstream 2485877 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 2485877 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 2801476 31061730 ~ 31097888 (+) False spsb4a

Expression Profile