RNA id: XM_026936377.2


Basic Information

Item Value
RNA id XM_026936377.2
length 4920
RNA type mRNA
GC content 0.44
exon number 7
gene id si:dkey-28a3.2
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20485644 ~ 20496755 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGATGTTAAACCCAACCAAGTCAACGCTCCTCGTACCAAACGCTGTTACGAGCGCAGCATTTCGAAGAAGCATTCGCTGATCGCTTGTAAAAGCAGCAGGAAGACGCATTCGCCTGTTAGTTTTCCGGTGCACTGTCGCTTTAAGAGTGCTCTCCGTTTCCGCGTACACGCGCAGCAGCAGTAGGGCTCGAGCTCTCACATCCTGGTACTTTGCACTACATGGCAGCAGCGGGAGAGAAAGGGTGATCCGGGAAGTGAACCCCACTGTCCTATCTGGACTCCCGTCTGAGCGTCTGTAAACAGTCCAGGAAAGTTAAGCCTGATCGCCAGttgcaGGTTTTGCTCTTGGATGCTACTTTTGGAAGAATTGGAACTATGCTGCAGTCATTTTCTATAAGCCTAAATTTAACTAAACACAGGGAGGAAGACAgccacaaataaaatataatgtgacCTTGTTGCAGAGAAAGCATCTGTCTTAACAAGGGACACCTTCTTTGTAGGATTTGATGTGTACATCATTAAACTGTGGTGAGGGAGGAGGGAACAAACAGTAGGTATGTCTAAGACAACGACCTTGATGAGGCACCGATACCGGCCTGTGTCGGAATTCGATGAAGTCACTCTGGCCTCTAAAAGGGAATACTGGAGGACTAAGAAAAGGGAGCAGAGAGCAAGGCTGTCCAAGGCCAAGAAGAAGGTTAAAGCTCCAAACACAGGAATCTGTAAACCTGTGTGTACAGATGGACATGTGCCTCCTTGTGAATTTAGTCCTACTTTGCTCAATAGTGATGGTTCATACCAAACAAGTGTTGCACAAAATCAGACCAAGGGTATGGTGATTTGTAAAAAGCAGATGAAAAGCTTGACCACTGAAGAATCAAACATGGAAGCTTCCATGATCAAACTTAATGGGGCACCACTCACCAAGGGCTTACCAGTGCCTGCAGCATGCATAAAGGTACACCCAACCAGCACAACACCTCGACAGACACTGAACAGATCATCAGCCTTTAACGGCAACCTCTCAAGCATTTCTCAGATAAGTGCTGTATCCCAGCTAGCACCAAAGTGCAGCAAACAAGCCCCTCAAATTAAATGCTGTGTAACACCCAGGTCCTTGGCCTTTGTGGAATGTAAGTTTGATAAAGACCAGCGCATCCTAGCAAGAAGTGGTACCAATACAAATAGAAATGCTGGTGCCAACGTTCCGGTATGCAGCATGGTCGTGTGCAAAACCACAGAAGTGGCCATGACTGAAGAGGAGAAGGTTGCTAAGCGTAGGGAGAACTGGCGTATCAAAAAACGAGAGCAAAGGGCAAAACGTGCTGAGAAGCTGAAGATGGATCGAGAAAAGCTGCAAAGTTTTGAAAAAGGACAACAGGAAACAGAGAAGCTTTCCTGTGCTGCCCCAGCACATTCATTATCTCCTGTGAACACAATGGCTTTGAGAGGAGCCAAGCAATGTAACTCTGGGATGTCTGTTGACTCAAGACTGAGTGCTGGAAAACCATTACATTATGGAGTCAGAGTGGAAAGAGATAAATTATCAACCCAAAGACCCTATAAACCACAATCAGTGGTTTTAAAACTAGCCGAAAGGCAAAGGTTAATAACCAAAAACCTCTCCTCTGTTGCAGTTTATAGCACAAATCAATTTCAGGATTCAAAACAAAATCATATGGCCATATCTTCAGGGGTTTCTCTGCAGCCTTTAAGATCTACCCAAGCAAGTGGGCAATCCAAAATGCCGCAACAGAGGTTTGTCCGAATTCAAAGGCGGCGTGGTTTACCACAAGGGAATGAGACAGCCGAGGAGCGACTTGCCAAGCAAAGGGAGTATTGGCGTATCAAAAAGCGGGAGCAAAGAGCAAAGCGTTCTTTGGTATTGAAAGGCCGCTTGAAGGACCGGGATGCGTTTAATTGGCGTGCAAAGCGCTACCAGATCATAATGGAGCAAATGCGAAAGACACCAACAGGCCTCCAGAAAATACCACaaccaaataaaaacacactcctcaacacCTCTAATCCTATTAGTAGCTTTATCAAAGAGGATGGCACAGTAACTGTCACCATGTCGAAGACTACAGCTGAGAAAGGTCCACCTGCCATAAGCTGCAGTTTATCATCTGTGAAATTATCAGAGTCATCTGGTCCACCTATGTCACAAAATTTAATTAGGACCAGAGCCAGACCTGTTCTACATAGCATTCCAAATAACACAAATGTGTCAGCAAATCAGCGAAGAACTCGAAGGTCAACTGGTCAGAACATTACTGCTTTTGATCCTGTGGTTGGGTCAAAAGTAGCCAGTGGTACAGAAGATGCTACGATTCTTACAAGTTCAACAGAAGCCACCCAGACTGAAGACCTAATTGCAGAGAATAGGACAACTTTTAAGACGGAGTTGGAGAGCTGTGATTCCAGTTCAGCTGTTACCCCAGGTTTGGTCTCAACACCATGTGATACCACAAAACAAGAACCCATTTATCCCTCAATAGCTATGGTATGTTCCCTCAAAGAACAAAGTCAGACTATGAACATTAAAGACACAAAATCTGTACCTTCCTGTCCCCAGACCAGTGCTGAGGCGGAGCCTTGTTCGAATAGTGACAGCCAGTCCACCACTCTCTTAGTGGTGGCATCTATGAAAAAGCTCCTGGAAGAATCTCTTAGCTCGGTGGGTGACAGTAATAGCTGTTCTATAGATAAAGGTGAGCTTTTGCCTTGTAAAACTGAAGATAAACCTTTTCttcaggaggagaaagaaacagacagaaagcctGACCTTACAACACCTCAGGAATTCTCTGCAGACACTTACTCTTCTGTAGTGGTCAAACAGAGTCCATCTCCTTGTCATTCTCCCCTGCAGGCACAAGACTTTTCTTCTGACGGTACTGTCCTTTCATGCCGAGACTCCTCACTTCAACTTCCTTGTACTGCCACTTGCTTTAATAAAGTTCCAGGAGATGAAAGATGTGAATTGCCAGTGGCTGTATGTGTGACCCCCTTACAGAGGGGCAACTCAGTACATAGTGGCAAAACTTCCGCACCCCAGCGGAATTTTCCTCCTCAGGCTCGTGGAGGTCAGCAGCTGAATGAGAACAGTGAGctccagagaaagagagaatactGGCGAGTAATGAAAAGGCAACAGAGAGCAAGGAAGGccaaagagatggagagaggaaaagatgcTCTGCGTCCTCCTCAGAGGAAATGTGGCACCTCTCAAGTCATTCACCCGCCTGTGGCTCAGAAGATGAATCACACAAACCTTAACAATCCTGTTATTCTACCCAGTGTCACTTCACGTCCCACCCGGCCTGTGTTAAGTCCCACTGCATCATCTAACCAACAGCCATCAAATGAGGCAAGGCAGCTATTGTTTGAAGGACAGAAGGGTAAGACTAAATATTCAGAGGTGTCTCAGGTGAACAAATGGCAGCTACAGGTTCAGGGAAATGTTCCTACTTCAGCCACCAGACCAGGTACTGTGACCTCCATTCCGATGAATAATGTAAAGCTGTCAGATCCTCAAATACAGACTAGAGGGTCCTCAATGACCAAATTAAAAAGTAATCAAAGCCAATTAAAGATAACTGCAAATCAAGAACTAGATCCTGATGACGTTATACAAAGGAAGAGGATGCATTGGAGAATAAAGAAGCAGGAGCAGCGAGCTCGGAAGGCGGCACGGGAAAGAGAGCTCAGCCACCAGACAACACTCAACCAATCAAGACACAGCTGGTCAAACAACGTTACACATGTAGTTCAAAGCATACCACCAGAGAGACTGGACTACATGCCTGAAGAGTGTCAGACTACATCAGTGAAAGATGAAGCAGAAATATGTTATATTCCTGATGATGATTGTTCAGATGAGCCCTTGTCAGAGGACAAGTGGAGAAGCACCTACCTCATGGATTACGATCCTGTAAACCAGCTGCTGGTGTGCATGGTGTGTGGGGAACAGCAGTACACCTTTAGTGCAGAGGTAGTGAGAGCTCATATAGAGGAAACCCACCCTGGCACTCTGTCATTGGAAGAGGCTGAGCGTCAACGCATCCTAGAAGCCTGGGATGAGCAAGTGGCAGTGAGAGAGCGCTTCTTCACCAACCAGCTGTGGCAGAACAGCAGTGTCCTCAAAGAACAGAGCTCGAGGCACACAGCTGAGGTCGAAGTGATTCTGGGCCAAGATGACAAAGCAGATCAATCTAAATAAGTCTTGGTTTGCTGATAGAAAACAAGGTAGTGtgagaaatgacattttccaCAAGAATGTCAAAATCTGGAAATCTTAAATGTATTTGTTAAgcaaaacacaaaagcacagagGGACATTTGAGGCATACTCTGCCTGAGCATGTTAAAGCTCTTTTTATAGTAAACACCAAACACATGGTGTTTTCATCTGGATTGTACTGCATTGCTGTATTGCAAACTTTTTCTTAGAGAGGGGACAAAGTGATACATCCAATATAAATGCGTGCAAATGATAtcaattttatacatttatgtttacataCATTCATCTATGTGCATCCATGTATTCATCTGTGTTTAACATTCAACATTAACCTCCATAGCTGTTTGTGTTCTGGATCTTTCACAAACTGAGGAGTCGAATTTGAGATACTGTAGACCTCTTCAATGGCATGCTGTTTCTTTCACCCTGGTGCTTATCATTTCCTCAGAGCATTGCCTTCCTTTTTTAAGATGTTACTATTTAATACTACATacttacacacacccacacacctgtTACGTTACATAGTGATCTCACTGAACCATTCATGTTAATGATGTTTAAGTGTGCATTTGCTATACATACAgcaattatttctgttttaataaaaatctttttgttctgggaaaagaataaagaatttgGTATTCATTTTACTTTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80554 lncRNA upstream 3889 20480600 ~ 20481755 (+) True G67958
TU80393 lncRNA upstream 209969 20250058 ~ 20275675 (+) True G67827
TU80206 lncRNA upstream 418479 20066030 ~ 20067165 (+) False dock11
TU80207 lncRNA upstream 418606 20066030 ~ 20067038 (+) False dock11
TU80167 lncRNA upstream 519756 19962599 ~ 19965888 (+) True G67642
TU80678 lncRNA downstream 138593 20635348 ~ 20635565 (+) True G68054
TU80695 lncRNA downstream 195508 20692263 ~ 20693053 (+) False G68070
TU80696 lncRNA downstream 195508 20692263 ~ 20693111 (+) True G68070
TU80850 lncRNA downstream 368123 20864878 ~ 20895955 (+) True G68192
TU80969 lncRNA downstream 691776 21188531 ~ 21189134 (+) True G68299
XM_026937239.2 mRNA upstream 5847 20458841 ~ 20479797 (+) True rtn3
XM_026937240.2 mRNA upstream 5847 20458912 ~ 20479797 (+) False rtn3
XM_026937241.2 mRNA upstream 5847 20458920 ~ 20479797 (+) False rtn3
XM_026936848.2 mRNA upstream 73988 20378775 ~ 20411656 (+) False rgs12a
XM_026937249.2 mRNA downstream 8009 20504764 ~ 20544748 (+) False eml3
XM_026937251.2 mRNA downstream 8009 20504764 ~ 20544748 (+) False eml3
XM_026937250.2 mRNA downstream 8009 20504764 ~ 20544748 (+) False eml3
XM_026937252.2 mRNA downstream 8009 20504764 ~ 20544748 (+) False eml3
XM_034303323.1 mRNA downstream 25627 20522382 ~ 20544748 (+) True eml3
trnaa-cgc other upstream 133159 20352414 ~ 20352485 (+) True trnaa-cgc
TU80337 other upstream 330873 20147795 ~ 20154771 (+) False fcer1g
trnar-ucu_2 other upstream 384546 20101025 ~ 20101098 (+) True trnar-ucu_2
trnah-gug_5 other upstream 656754 19828819 ~ 19828890 (+) True trnah-gug_5
trnah-gug_4 other upstream 657262 19828311 ~ 19828382 (+) True trnah-gug_4
TU80896 other downstream 523503 21020258 ~ 21033753 (+) True G68232
XR_003404073.2 other downstream 830591 21327346 ~ 21327420 (+) True LOC113540699
XR_004577949.1 other downstream 1132321 21629076 ~ 21639890 (+) True mettl4
XR_004577950.1 other downstream 1132321 21629076 ~ 21639890 (+) False mettl4
XR_004578015.1 other downstream 1255661 21752416 ~ 21762301 (+) False LOC113540377

Expression Profile