RNA id: XM_026936380.2


Basic Information

Item Value
RNA id XM_026936380.2
length 4790
RNA type mRNA
GC content 0.45
exon number 30
gene id mrc1a
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 21807724 ~ 21828839 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTATTTGTTTCACATGGTTTGTTAGCTTCACACTATACACTTGAGCAGAAAtccacacatacaaacacatagacacacaacTCACTCCCTGGATTTTTCTTCTTGGATTATGAACTAAAGGACAGACATGAAGCTCCACTTTCCTCTGTTTGTGCTGCTGTGCCTCTGCATGACTTTGCACTACACTGTGCAGCTAgACAGTAGTGCTTTCTTGATCTACAATGAGGCTCACAACAAATGTGTGAAGGTGATAGATCCCAACGTGGCACAGGCCAGTGACTGTGACTTGTCTTCAGACACGCAGCGCTTCCGTTGGATTTCCTCTTCTCGGATCCTAAGCATCTCCCACAAACTGTGCCTTGGAGCTCAGGACCTTAAAGATTGGGTTAGAGTTGTTCTGCTCCCCTGCAATGAGCTCAGTCCTATGCAGATATGGGAGTGCAAGAACGAGACTCTGTTTGGTATAAAGGGCCAACCATTGCATCTGAATTACGGCAATCGCCATGAGCCCAATATACTGCTGTACGCAGGGACAGGTTCCTGGAGCCGCTGGCAGATATATGGCAATAAGAAAGACCTGTGCTCTCACGGATACCAAGAGATATTCACCATTGGTGGCAATGCTTTGGGCAGCCCCTGTCAGTTTCCCTTTATGTTTGGAGAGAAGTGGCACGCTGAGTGCACCCTTGAGGGGCGATCTGATGGACAGCTTTGGTGCGCCACAGTCACAGACTACAGCAAGGACAAGAAATGGGGTTTCTGTCCAACAAAATCATCATCAGGTTGGGACACTGATCCAGTAACCGGTGTGTTGTACCAGAGGAACACTCAATCAGTGCTGACTTGGCATCAGGCTCGCAAAAGCTGCCAGCAGCAAGATGCTGATCTACTCAGCATCATGGAACTGCATGAGCAAACATATATATCAGggtTAACTAATATACTTGGTTCGTCTCTTTGGATTGGACTGAATAGCCTGGATTTTGAAAGTGGCTGgcaatggagcaatggaaaCCCATTTAGATATCTGAACTGGGCTCCAGGCCACCCCTTACTGGAGCCTGGCATGAACTGTGCAGCACTTAATGCTGGGAAAGCATCTAAATGGGAGAGTATAGCCTGTAGTAGTAAACTTGGATACATCTGCCGCAAGGGAAACTCCACTACCATTACACCTTCAGTAGATAAAGACCAGCCCAGTTTCTGCCCACCCACCTGGGTGCCGTATGCTGGTCACTGCTACTCTCTCTCACGTACTAAGATGATGTGGAAAGATGCTCTGACAGCCTGTCGTAAAGAAGGAGCCGACCTAATCAGTATTCACAATATAGAGGAACACAGCTTTATTATATCACAGAGTGGATACTTGCCCACTGATGAATTATGGATAGGTCTAAATGATCAGAAGACTCAGAACCTGTTTGAATGGTCAGACAGAACCCATGTCACCTTTGCCAAGTGGCTTGTGGGAGAAccttcacacacagctgtcctCAGAGAAGACTGCGTTCTCATGAAAGGAAAGGAGGGGAAGTGGGCAGACCACATGTGTGAAAAAGAGTATGGCTACATGTGTAAGAAGAAAGCCTCCACCAAACCTGCAGGGTCAACTGAGGTGATCAGTCCTGGATGTCCTGCTGGTTGGATCAGGTTCAACTCCTACTGCTACAGCATTGCTGTAGAAGCCAAAACCTTCAATGAGGCCAAAACAGCATGTGGACAGAGTGCATCTAACCTAGTACAAGTTGCAGACAGGTATGAGAATGCTTTTCTGATCAGCCAGATTGGCTTACGGCCTGAAAAATATTTCTGGATTGGTCTGTCCAATACAGAACGTGCAGAACGCTTTGAGTGGACAAATAAGCAAACAgtcaaatttacacattttaatgtagGAATGCCAGATAGGCACCAGGGCTGTGTTGCCATGAGAACTGGGACCTCAGCAGGATTATGGGATGTAATCGCCTGTGACAGTAAAGAGAAGTACATCTGTAAGAAAATAGCAGAGGGTGTTACTACAACCAGAGAGCCTCCTCTGACACAACCTCTCAGTTGCCCCtccaaatggataaaaaaagacCCTGCCAATTGCATTCAGATATttagaaatgaaagagagaaaaagaaaacatggttTGAGGCACGTGATTTCTGCAAAGCCATTGGTGGTGATCTTGCTAGCTTTCACACTGAAGCTGAAACCAAAAATTTACCGTATGGTGGGGGAAATGATCCAGCATGGATTGGCTTTAATATTCTGGATGATAATGCTGGATTTGAATGGTCAGATGGAACTTCATCAAACTATGAGAACTGGGCCTATGGGGAGCCCAATAATTACAATTCTAATGAGCTTTGTGCAGAAGCCAGCTTCTACTATGGTCATAGGTGGAATGATAGGGATTGTGAAGCCTACAATGATTGGATCTGTCAGATACGACTGGGTACAACTCCAAAACCTATACCTACAGGCACCCCCCAAGTGGAGTTTAACATTACGGAAGATGGCTGGATCCAGTTCAATGGTAGTCAGTACTACATTAATAACGAGCGTCTGGATATGGAAGATGCTCGTGCATTTTGCAAGAAGAACCATTCTGACCTTATTGTCATTACCGGTCAAAGTGAGAGgaagtttatatataaacagATTTCAAGAGGCCCAGAGGACCAGTACTACATTGGAATGACAGTGGCACTGGATAAATCCTTTAGTTGGGTGGATGGTTCCCCAGTTGTCTATACAGCATGGAACCAGAATGAACCAAACTTTGCCAACAATGATGAAAACTGTGTTACCATGTACAAGAGTATGGGATTCTGGAATGATATCAATTGTGGAGTACAATTACCCTCTATCTGTAAAAGAAGGGTTAACTTTGTCACCAGCACAGCGGCTCCTACCACTGCACCAAAGGGAGGCTGTAGTTCAGACTGGACAGCTTTTCAGGGAAAATGTTATAAATTTGTAGGGAAAGATGGTGGCGAAGAGAAATCATGGCATGATGCTCGACTATACTGCATCTCTCAAGGAGGCAACTTAGTGTCCATTCTGAGTCAAGCAGAGCAAGcATTTCTCACCACTTTGATGCTCAGTGCACGTGATGACATGTGGATTGGCTTGAATGATGTCAACTGGGAGATGCGTTTCTTTTGGACAGATGGGAAAGGTGTCAAGTTTACCAACTGGGCCAAAGGTTATCCAGTGTCAGTTCCAGATGGACGCAGAGCATATGGAGTAGATTTTGACTGTGTCATTATGGTGAAGGCACCAGACAGGATTACTGGCATGTGGAAGGTTGAGGACTGTGAAGAGAAACGAGGTTTTGTGTGCAAGAGGAATATTGATTCTCAGATCCAAGTTCCAGTGACAACAATGTCAACAGCGTCATATTTTAAACTGGGAAATAATTCATATAAGATACAAACTGAGAAGATGAGCTGGGATGAGGCAAGGAGGCAGTGCAAAGCAGACGATGCTGACTTAGCTAGTGTGTTAGACTCTGTCACCCAGGCATTCATCACCCTCAGGACTGGCAGATTGAAAGAGCCTGTGTGGATTGGCCTGAACAGCAATGTGACCGGTGGACGATACCGCTGGACGGATAACTGGTTACTGCGCTACACTAAATGGGCTGCAGGTGAGCCACTGAGAAACCAGGCTTGTGTATACATTGACACAGATGGAACATGGAAAACATCAGAATGCAGCAAAAGCTACTACTCTCTCTGCAAACGCTCACCAGATATCGCGCCCACTGATCCCCCTCAGCTCCCAGGACGCTGCCCAGAACCAAAGAAATCCAAGGTTTGGATTCCTTTCCGAGgacattgttatgtttttgtagcCTCAAGGAATGAGAACTGGGCCCATGCTTCAGTGGAGTGTATGAGAATGGGTGCATCATTGGTGAGTGTGGAGGATGCACTGGAGTCTACCTTCATCCGCCAGAATATTGAGATTCTTCATGATGAAGCTAAATCTTTCTGGATTGGCATCCACCGCAGCTACACAGGTGAGTGGATGTGGATTGATAACACTGTGGTGGACTACACTAATTGGGCACCACGGTCACCTGGTACCCACGGCGACTGTGTGGAGGCTAAATCAGAAAGTGGCTTGTGGATAAACTCTCACTGCAGTGCGTACAGAGCCTATATCTGCAAAACCCCCAAAATTATACCACCAACTGAGAAACAGCCGGCAATTCAACCACATGTGGAAGAAGCCTCTCATGGCTACACTGGTATCGCTGTAGCAGTTGTATTGGTGATAATTGCTGTAGCAGGACTGGCTGCCTTCCTCTTCTATAAAAGACCAACTATCCCAGTAGTCGGGGAGTGTACGTTTGATAACACACTCTACTTTAACAACCCTGCACGATCTACCACTACAGTAGACACCAAGGGACTGGTTACCAACATGGAACAAAATGAGcatgcataacacacacacacgcacacacagtgttaCAACAAATTTCTATGTTAattacacaaaagaaaaatgtgttttttaaataatcaagaTGTATAGATGAATTTTGTACATCACCAATCTGCTTGGTAGTAGGAAGATGTCTGCTCAATATTTAGTAGAGTAATACACAAAACACTTTGTCCACTCTGCTAAACATGAGGTGATGAAATCACATGTTGCTTATTTACATCTTATAGTACTTTCTTTAATCCTAAAAATGTTCAAGATAATATAGGACAATGTAAATGTTCATAGACTGTATACCACCATATTTTTATTCTCAGAGCTGTGCTTTATTGAcattgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81415 lncRNA upstream 45443 21754108 ~ 21762282 (+) False LOC113540377
TU81416 lncRNA upstream 45496 21754108 ~ 21762229 (+) False LOC113540377
TU81417 lncRNA upstream 58406 21732946 ~ 21749319 (+) True G68621
TU81294 lncRNA upstream 320237 21486974 ~ 21487488 (+) True G68523
TU81189 lncRNA upstream 486319 21321145 ~ 21321406 (+) False plag1
TU81502 lncRNA downstream 85968 21914806 ~ 21917776 (+) True G68687
TU81775 lncRNA downstream 415750 22244588 ~ 22244825 (+) True G68947
TU81789 lncRNA downstream 554256 22383094 ~ 22387745 (+) True G68955
TU81788 lncRNA downstream 564001 22392839 ~ 22397101 (+) True G68954
TU81842 lncRNA downstream 698490 22527328 ~ 22527556 (+) True G68999
XM_026936150.2 mRNA upstream 14524 21787190 ~ 21793201 (+) True LOC113539992
XM_026936530.2 mRNA upstream 30904 21767052 ~ 21776821 (+) True LOC113540212
XM_034303777.1 mRNA upstream 45424 21754080 ~ 21762301 (+) False LOC113540377
XM_026936822.2 mRNA upstream 59012 21741189 ~ 21748713 (+) True enosf1
XM_026935991.2 mRNA upstream 167568 21629077 ~ 21640157 (+) False mettl4
XM_026936381.2 mRNA downstream 186 21829024 ~ 21843884 (+) True LOC113540130
XM_034303784.1 mRNA downstream 186 21829024 ~ 21843884 (+) False LOC113540130
XM_026936359.2 mRNA downstream 20803 21849641 ~ 21914232 (+) False cacnb2a
XM_026936361.2 mRNA downstream 20804 21849642 ~ 21914232 (+) False cacnb2a
XM_026936362.2 mRNA downstream 49276 21878114 ~ 21914232 (+) False cacnb2a
XR_004578015.1 other upstream 45424 21752416 ~ 21762301 (+) False LOC113540377
TU82445 other downstream 1489666 23318504 ~ 23320343 (+) True G69509
TU83028 other downstream 2279957 24108795 ~ 24109889 (+) True G69971
XR_003403979.2 other downstream 3030188 24859026 ~ 24871263 (+) False kif2c
XR_003404013.2 other downstream 3878989 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 4069297 25898135 ~ 25901843 (+) False LOC113539772

Expression Profile