RNA id: XM_026936381.2


Basic Information

Item Value
RNA id XM_026936381.2
length 3323
RNA type mRNA
GC content 0.44
exon number 12
gene id LOC113540130
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 21829024 ~ 21843884 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCAGCTATAGAATATATAATGAagtgctgctctctctctctctctctctctctctctggggtTCTCTATTTGTTTccctatatctctctctctctctctctctctctctctctctctctctgtctgactctcatACAACCTACATGATCCCCACAATCATTTCTAAAATGAGGCTCATACTGCCATAGTAACCACTGACCTAAGAGCCTCAACCAGAGGCTACTAATCCCCTGCAAGGGGCACTAGCATATTTGCTCATTAAAGCATTTACCCGTGCTCTGGAATTCATGCCATAGATTTCTCCCAGCTTTCTGAACCTTGGAGAAGGAATATATTCTTTTCTTCAGCTACACAGTGGACTGGAAAGAAAAGCAAGGCCAGTAATTTCATAATTAAAGTTGAGATTTAAAGAGAGGgactaaaaataaattgtttagaCTTTATAGTCTTGGAGtgagttgttgtttttggtgttgctgGTATTGGTGTAGCATAATAGTCAGTACAGTGTGTAGTCAATATTGTGAGTTATAAGAACTTGCTAGTCATGGAGAGCATTTTGATTCTGTGCATAGCTGATGCATGGGtagagtttgtgtgtgcatgtttcaggATTTGTGTAGTCAGTTTTTAGGCACGGGCTTAGATACTGTGTATGTGAAGTTAACGTACATGTAAACAAATCTTGCCCTGTCCTATAGTATCAGCAAAGAACTTACTATTGTCTGTCTACGTTCTTAATTTAACGCAAAACCCAAGCTCTTTCACCTTTTCcaagtttctgtttttctcctgtttgTTCAGAAATGCTTTTTGGGCAGAATAGGAGTCAATGTAAAGGCTTGAAGAAGCTCATTAATGGGGCCTTTTTCTGGCCTCCTGCTACTCCAAAGATTCTTTGAAAAGCCCCTTAATTAcaattcattaaagaaaaaaaacatgccctCTCAGCCTACTCCCCCCAAGCCCTTTGCTATTCACATACTACAGTTTCTCTCCATTTCATGCCTTGTACTTCATCAAGCTTTTTGGTCTATAACAAAAACTCTTATAGTTTgtgcttcttttctctttctgcttctCCTGTGTCCTGTGCAGGTCTCAGTTACCGTGAGCGTACGTACATGCAGGGGTGTGTTAGTTGCAATGTGCAGTTTGTACAGATTATGGCCTGTGCTGGGCCTTCTCAATGGCCTGAGTAACTGGATACCAGTGGCAAAAAGTCAGGAAGCCTTGCGAAGGGAAGATGTGGGTTCTTTGGTCAGTGAGCTCTTCAGGATTGTCGAGTGTCCAGAAAACCAGCAGCTCTGTGAGAAGTGTCTTCCTCAAGACTGGTTAATGTCAGCACTGGAAGATGATGGGAATGACTACATCAGTGAGAACACCTACCTTAAGATATCCACCATGCTCCTCTATTATATCATCAACATGAGACAGATTTGTTCCTCCAATGCCTCATCTTTGTCACCCTCCTCCTTCTTTTCACCCTTATATCATGATTTCTCATACTGTCTTCGAGCTCTGACTTCACTCCACTCATCAGAAGATGGACATTTCCTCTCACCCAATGAAACAGAGAGCATCTTGCAACTTATTAACCAACACTATCAACCAGAAGAAAGACCtgcctcaaaacacacacagTGTATTGATGCTGCACAGCTGATGGAGGAAGTGGGCGTGACTGACAGCAGAGGTGTCGAATCATCCTCTGTTCCTCTATTAGCTGCGGCTATTGTCAATCACTTGCGCCAGGGCCGTTGTGTAAGGAGACGAAACCTCCCCTCGCCTGCTTTCTTCACTGATTACATATTCCAGTCGCTCAACCGAACCAGTGATCTCTATGTCATGGATCTGCAACAGCTATTACTCCAACTTGGTGTTGGTGGAGCTGCCTCTACCAAATCACAAGGCAGGAGAATGAGGAGCACAACAGAACCATCCCCTAATACATATAATCAGGAATTACTAAGAGGAACCAGAGACTGGACACAGATGTGCTTTTCAGCTAGTCAGCTGCTGGACATCTTTGTCCTTGATCCTTTCTCACCAATCTCCAGAGATCACTTCAAAAACATCTGTCCTGCAATCATTCAGCAGCTGCTGGGTGATGCCTGTAACCCTACACAATCAATAGCTAGGAAATCAACACCAAGTGACATTGAGAAGTATGGCTACAGTTCAGTTGCGGTGTTGCTGATCACGGTGGGTTCGATGTTGGGTATTTGCCTGATCTTCTTTAGCTCCTGTCAGAAGACTTACAATCTCATCCTGCAGCTGTTTGTTGGGCTTGCTGTGGGCACACTGTCAGGAGACGCACTGCTCCATCTGATACCAGAGATCCTTGGCCTTCATGATGACAGCCAGCATGATGACTCTAACCTTATGGAACAAAAAGAATACCTGTGGAAGATCATGGGCATAATCGCTGGGATCTATGGCTTTTTTCTTATTGAGAGAATCTTCTCATTTGTAATGTCATCACAAGGGCATAGTCACTCACATGGCTTGTCTGTAGAGTTGAGCTGTAATGGAGAAGGCCAGAGGGGAAAATCAGTGTCTACCATGCAACTGAGAACTTTAGAGGAGACAGAGGGTACAGAAATACAACAAGTGGAGCCCAGCATCGAACCTGCTCAGCGACAGAAACGAGGCATTCCACTGCTGGCTGCAATGGTGATAGTGGGCGACAGCCTCCATAATTTTGCAGATGGTTTGGTGGTGGGAGCAGCTTTCTCCAACTCAGTCGAAACTGGCATGGCAACAACAGTAGCTATCCTGTGCCATGAGATTCCCCATGAAATGGGTGATTTTGCTGTGTTGCTGAGTTCTGGTCTGTCAGTAAGGCGTGCTGTGCTCATGAACTTTGTCAGCGCCCTCACAGCCTTCATAGGGCTCTACATCGGCCTTGTTGTCTCCTCAGAAATGGAAGTACAACAGTGGATCTTTACTGTCACAGCTGGGATATTTCTCTATCTGTCACTGGTAGAGATGATGCCCGAGATGAGTAGAGTTCGCTCTCCACATCCATTTCTTATGTTTATTCTGCAGAATATTGGCCTCTTGGTGGGCTGGACATGTTTACTGCTTCTAGCACTCTTTGAACACAAACTCACTTTTTAACattcacacatgcatacacatctCACAAGGCAGCATCAAAGTATATAATGTTGTTTCTTTCAGagttttttaaagcaatattttagCCCCAACCAAAATCTGCTGAAAAAAAGTGTATAGTTAAGTAGTGTTATTTTCACCAATGCTAGTCTGGGACTTTCAAACTGCACATTTTTGATGTTTTACCTATTGTGATGCA

Function

GO: NA

KEGG:

id description
K14718 SLC39A12, ZIP12; solute carrier family 39 (zinc transporter), member 12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81415 lncRNA upstream 66742 21754108 ~ 21762282 (+) False LOC113540377
TU81416 lncRNA upstream 66795 21754108 ~ 21762229 (+) False LOC113540377
TU81417 lncRNA upstream 79705 21732946 ~ 21749319 (+) True G68621
TU81294 lncRNA upstream 341536 21486974 ~ 21487488 (+) True G68523
TU81189 lncRNA upstream 507618 21321145 ~ 21321406 (+) False plag1
TU81502 lncRNA downstream 70922 21914806 ~ 21917776 (+) True G68687
TU81775 lncRNA downstream 400704 22244588 ~ 22244825 (+) True G68947
TU81789 lncRNA downstream 539210 22383094 ~ 22387745 (+) True G68955
TU81788 lncRNA downstream 548955 22392839 ~ 22397101 (+) True G68954
TU81842 lncRNA downstream 683444 22527328 ~ 22527556 (+) True G68999
XM_026936379.2 mRNA upstream 185 21807724 ~ 21828839 (+) True mrc1a
XM_026936380.2 mRNA upstream 186 21807725 ~ 21828838 (+) False mrc1a
XM_026936150.2 mRNA upstream 35823 21787190 ~ 21793201 (+) True LOC113539992
XM_026936530.2 mRNA upstream 52203 21767052 ~ 21776821 (+) True LOC113540212
XM_034303777.1 mRNA upstream 66723 21754080 ~ 21762301 (+) False LOC113540377
XM_026936359.2 mRNA downstream 5757 21849641 ~ 21914232 (+) False cacnb2a
XM_026936361.2 mRNA downstream 5758 21849642 ~ 21914232 (+) False cacnb2a
XM_026936362.2 mRNA downstream 34230 21878114 ~ 21914232 (+) False cacnb2a
XM_026936365.2 mRNA downstream 34230 21878114 ~ 21914232 (+) False cacnb2a
XM_026936360.2 mRNA downstream 40376 21884260 ~ 21914232 (+) True cacnb2a
XR_004578015.1 other upstream 66723 21752416 ~ 21762301 (+) False LOC113540377
TU82445 other downstream 1474620 23318504 ~ 23320343 (+) True G69509
TU83028 other downstream 2264911 24108795 ~ 24109889 (+) True G69971
XR_003403979.2 other downstream 3015142 24859026 ~ 24871263 (+) False kif2c
XR_003404013.2 other downstream 3863943 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 4054251 25898135 ~ 25901843 (+) False LOC113539772

Expression Profile