Item | Value |
---|---|
RNA id | XM_026936385.2 |
length | 3733 |
RNA type | mRNA |
GC content | 0.38 |
exon number | 11 |
gene id | LOC113540131 |
representative | False |
Item | Value |
---|---|
chromosome id | NC_047598.1 |
NCBI id | CM018544.1 |
chromosome length | 33267568 |
location | 32081919 ~ 32105291 (+) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
species | striped catfish (Pangasianodon hypophthalmus) |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
XR_004577980.1 | lncRNA | upstream | 218762 | 31859960 ~ 31863157 (+) | True | LOC117597031 |
XR_004577981.1 | lncRNA | upstream | 218762 | 31859960 ~ 31863157 (+) | False | LOC117597031 |
TU88141 | lncRNA | upstream | 234053 | 31822525 ~ 31847866 (+) | False | LOC113540254 |
TU88150 | lncRNA | upstream | 234169 | 31809876 ~ 31847750 (+) | False | LOC113540254 |
TU88389 | lncRNA | downstream | 102070 | 32207361 ~ 32207824 (+) | True | G74573 |
TU88394 | lncRNA | downstream | 178917 | 32284208 ~ 32296534 (+) | True | G74578 |
TU88396 | lncRNA | downstream | 213141 | 32318432 ~ 32340074 (+) | True | G74580 |
XR_004577915.1 | lncRNA | downstream | 427555 | 32532846 ~ 32533606 (+) | True | LOC117596964 |
XR_004577916.1 | lncRNA | downstream | 584135 | 32689426 ~ 32690023 (+) | True | LOC117596965 |
XM_034304128.1 | mRNA | upstream | 305121 | 31759889 ~ 31776798 (+) | False | LOC113540067 |
XM_034304129.1 | mRNA | upstream | 305121 | 31769827 ~ 31776798 (+) | False | LOC113540067 |
XM_034303620.1 | mRNA | upstream | 328252 | 31732612 ~ 31753667 (+) | True | smg7 |
XM_034303622.1 | mRNA | upstream | 328252 | 31732613 ~ 31753667 (+) | False | smg7 |
XM_034303858.1 | mRNA | upstream | 375650 | 31690175 ~ 31706269 (+) | True | lamc2 |
XM_034303860.1 | mRNA | downstream | 211697 | 32316988 ~ 32319907 (+) | True | LOC117597128 |
XM_034303675.1 | mRNA | downstream | 1029064 | 33134355 ~ 33148431 (+) | False | mmp14b |
XM_026912173.2 | mRNA | downstream | 1031760 | 33137051 ~ 33148431 (+) | False | mmp14b |
XM_034304145.1 | mRNA | downstream | 1069183 | 33174474 ~ 33249659 (+) | True | chd8 |
XM_034304147.1 | mRNA | downstream | 1069183 | 33174474 ~ 33249659 (+) | False | chd8 |
TU88369 | other | upstream | 38766 | 31987395 ~ 32043153 (+) | False | LOC117596940 |
TU88370 | other | upstream | 38766 | 31987395 ~ 32043153 (+) | False | LOC117596940 |
LOC117596930 | other | upstream | 46326 | 32034799 ~ 32035593 (+) | True | LOC117596930 |
LOC117596940 | other | upstream | 82788 | 31998544 ~ 31999131 (+) | True | LOC117596940 |
LOC117597124 | other | upstream | 106851 | 31974340 ~ 31975068 (+) | True | LOC117597124 |
LOC117596932 | other | downstream | 107968 | 32213259 ~ 32214313 (+) | True | LOC117596932 |
LOC117597126 | other | downstream | 142627 | 32247918 ~ 32261238 (+) | True | LOC117597126 |
LOC117597127 | other | downstream | 164053 | 32269344 ~ 32272134 (+) | True | LOC117597127 |
LOC117596951 | other | downstream | 168744 | 32274035 ~ 32274523 (+) | True | LOC117596951 |
LOC117596933 | other | downstream | 174723 | 32280014 ~ 32280776 (+) | True | LOC117596933 |