RNA id: XM_034303206.1


Basic Information

Item Value
RNA id XM_034303206.1
length 4890
RNA type mRNA
GC content 0.37
exon number 9
gene id LOC113540131
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32081919 ~ 32105291 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAAATCTCTCCAGTAATTATATCAGCAGATGGAATTTTAGCCAAATGATAAAGAAtcatattttctatatatttctatatcatTCAAAAGTTTGTCATTGCTGGTCGTGGTACTGTTTTGCATCATGCCCCTGACTTAtttgcaaatattatttttgttaggaATTTATTgatatgttatttaaaatgtcttcttttCCAAGGCAGCACATCAGCTTTTCAATggcatattttttgttgttgtttttgagttttatgTGTCATATGAGTTTGCCACTTATATGGTTCctgaattaattatataaagttTTCCACTTGAATGTACCAACTCCAAGCATTTAACATTTCTCAAAAtttggaaagaaagaagaattaATCCTCCCAGAACAGCTATCAACACATATAGGGATTCCAGCTTGGGAGCAATAGGAACATTAGAATGTCAGAAATTGTAGTTTCTGTTACATGAGTAATTAAAttcttaatattaacatttgatCTAATCTTAATAGATAGCAATTtgacacaaaaaataaacaaattggGAGATAAAAGGAGATACAATgggataaagagaaagaggcagCGCTATAACCattgtaaattatttactcGTAATATCAGAATACATGACCTGGGCCCAAATTTGTAAAGTTTGACCTAATACAAAACAacccaaatatttaaaaccaaacaaatttTAGACAAATTTTTGTCTAAAAATTCTCAGTGGCATACTTAGTAAATATAACTGATGTAAAACATGTACTTGtcaaatatttacagtacattgatagattattttattaattttcttgtattttacatgaattaatttaaaaatgttctctATTTACCCTTCTGTGGGGTGATGGATGAATTTGGGGTTTCTGGATGCCAGGAGAATGCTACATACCAGAATGCATTGTGCTAACAGTAATGTGTGGTGGAGGAGGTATAATGGTCTGGAGCTGTTTTTCAAAGTTTGAGCCCCTTAgatccagtgaaaggaaatgaatattaatgctACAGTGTACATTTTAGGCAATTGTGTGCTCCCAACTTTGAACTGATATTCAAATCAATTCATTGTCCAGCTTAGACTTCATATTTTCACTCTGttgaaagcttgccagaaacaatctaaaataattttgtaaatgactataaaaataaatagaactgAAATGAATGCCCTTTACAAACTACCTTCCTTCACCTCTGTATACTTTCATTGCATCCTAtagtttgttgttttgtaaaGCATGGTGAATTTTATAGCATACATGATTGAACCATGATGGAAACTCTGAAACAGCAgctgaaatgaattaaatgagtATTGTTTACTCTAATGCttgacttttctttcttcctcttttaaGTGTTTTGGTTGTAGTACAATACAGACTGCATTAATAGATCATCAAATccacacactgtgtgtgcagCTCAGGTCTCTGCAACATGAACATTACCTGGTATCAGGAAGCCAATCAAAATCAATACAACCATTCTCAGTACACCTCAGATCACCTGAGTGCCAACATCTTCATTATTCCTGCTATAATTCTGGCCATTGCAGTTTTATTCATAATTGCACTGACATGGAAAATAGTTTGTAAATGCTGGTGGCCTGCAACACCTCCAAACACTTGTGGCATCCCGAAGGGGTCTGACACTGACCTGGGTAACTTGGCATTGCAAAAGGTAATAGGTTATGGCCATTTTGGATGTGTTTGGCAGGGAACCTTCCAAGGATCATCGGTGGCTGTGAAAGTGTTttctaaaaaactaaaatgggAATTCAGTAAAGAGAAAGATGTGTACATTCTACCTTTAATGAAGCATCCTGGGATTGTACAATTTCTTACAGCAGGAAGAATGGGAAAAGAGTATGTGCTTGTTTTGGAACTAGCGACCGAAGGCTCTCTGAATGCATTTCTGTCAAGAACCGTGTGTGACTGGAGACATGCTGTAAAACTAGCTCAAACCTTATCAGAAGGACTGGCCTATCTCCACACTGACTTACAAAACCATGGAGTCTATAAACCCGTGGTAGCTCATGGTGATTTCAGCAGCAATAATGTTCTGGTGAGATCTGATGGCTCTTGTGCTCTGTGTGACTTTGGTTGCTCCACAATCCTACAAAACTTTCGGATCTGCCAAACACTGGAGGTTCAGCGTGACATAGCAAAGCAGGGCACATTTCAGAGGGGCACACTGCGCTACATGGCACCAGAGATCTTGGATGGCTGTGTTAATCCAAGCAGTGGCCACTCTTTTCTGCAGGCAGATGTGTATTCCTTAGGACTGCTTCTGTGGGAGCTGCTAATGCGTTGCTCTGATCTCTTCAAAGATTCTCCTATCCCAGAACACATGTTGCCTTATGAAATAGAACTGGGACACAGTCCAACCCATCAGGATCTTGTTACTTTTGTGTCAGAGAAAGGACTGCGACCAACCATACCCCACCTGTGGGGTAATATATCTCAGGGATGGTCTCTCCGTGAGATCCTTGAAGATTGCTGGGATCATGATGAGGATGCAAGACTGACAGCACAATGTGCTGCCAACAGATTGGCTTCTTTACCCTCTGAACTATACTAGAGTGGAGTCTGTGTGCACATATATTGGCATTTCTTTCATGCTGAAATTCTTTCAGCTCAATAATtcatttagatttaaaattaattttacaaaagcACCCACTGTACCTCAGAAGCCAAATTTAAAACtgttattaaatgaattaatgtcatgccaaaatatacaataaaacaataaaaaagaaaaataccgGAAACTAACATTAAAGGTTCATGAAAATAGCTTAATGGGAACCTTCTCAAATGCCTGCTAAAACCTGAATGGTCTGCTGCTGAGTAGTTGCACACCAAATATGTGAAGATTGGCCAAAAATCCTTGGACTACTTCAAAAAAGTAAGCATATTAAGCAAAtaagcacaaataaataaataaataattcgaAGTGGGTGGAGCATGGACTTTCATTTTGCTAACATTAGTATAAGTAAACTTGAGTAAAGGCCTCATATTTTCTTCAACCAGAGCATCCTTATGCCTCAGTTTCAGGCTAATATGTATTAATGAACTAAATGGACTCTTCAGTGGTCTCTGCAACATTCTCTATGATAATCACTGCATCCCTACTGGGCAGATACACACTGTTTTCAAACATGAGGTCTTCACAGACTCACTGTATATTTGAACCAGCGTGCATGCTCCAGCTATGAATAACCATGTAGctctattttaattaaaaataaactacattATCACAAGCCataaaaacacaccacagtAAAACTTCGATATCTGCTGTTTCAGTTACTGTGGTTTCACTTAACAGCGGTTGACCatattccaaaaaaataaatagaaatttcCAGAAATACTGTAAACATTCATAAATTGCGTGCTGTTCTGAGTAACATGATGAAATCTCATGTGGTGCTGCCAGGGACATTAATCATCCCTTTGTCCAGCATATCCATGTTGTGTATGCTACCCAGCCATAAGTCAATTAGTAGCTGTCTTGGATATCAGTTGAACTGTCATGGTATCATATCTGAACGTTGTGATCTAGGTACTCTCACAAGTAATTTAACCTATGCCCCTACATTTACATGCTTGATACCCCATATTGGTGTATAGAAGGAAAAGTACCCTCGCACCCATTTCTAGGTCAGACCTCTAGGTGTAAAAGTATTATCAAGCCGGCAATGTGTCAGTATTGTGGGTTGAGAATTGGCCAGATAAAGCGGTGAGTAATGTATCTGAATGCTTCTAATCCTCTAGAGCCTGGGAAAACTTGCTGAGTATCAATCAATAGTGTTTTCTAAGTTCTAATGGTGGACATGGCTGTTTTCTGATGAGACTGTATATAGTGAACTCCCTGCTCAGTTAATGCCCAGTGCACTTTGGAATACCGGTTTCTGGCCATACATCAATCTAATTATAACTCTCTCAATCCATCTCTCACGACCACTGACACATCACCACGTACATGCTTATCCTAGGGACTATATAACATGGAAAATCAGAAGTAACTTTAGCATGTAAAGCTACCATGATATTGACTTGTTGAGAGAACTGCACTGAGATGCATTCTGATGTTCTTGATCCAACTGATAACTTGATTGATCTACAAAATATGTTGGTTAATATTAGAACACAACTTGAGGCTATGACTAGAAATGATGGGAAGTGGATAAACAATATTATGGTCTGTTTTGGAATTCTGGGTATCAGGTTGAATATGTATTAAACTGAAAGTATGTCTTGTTACTAAGCTAACTGACCATTCAAAGGCACATGCAGCCTATACAAATGCTAGTTATGCTAAAAAATGAAGTATGTCCCGTATTACTGTGATAATATGTGTCTTTTTTAGATTGAGTGTTAgaatttcattttctctcaccACAGAAAGGTTATGAGCATTAGCTTGAATAAATCAATGTATCTGTTTGATTATAATTTTCATATAATCAAAAGGGGTATATTTGCAATGATttgattttcctttatttacCCTTAtgcttaaaatctgttttattctctttatgcTGCTTCTTAGTATTTGTGAgtgtaatttgtattttctgACCTGATCCGTCTCACCATAAGATGGATAGAATGTAGATAGATAAATGGTACTTGTTGTCATGTGAAGACCCTTTATTATACAATGAGTGAAGCCTCTCAGAATATGATATTGCATGTGTGACCTAAAAACATGTTATATATTAGGTAGgcttttacatatttattggGAAGGGAGACAAGACTGAAACAGAACTCCAACCACTCTCCCATATTTTTCCATCTGAAAAACTTTctgcaaataaaatgaatcttCTATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577980.1 lncRNA upstream 220059 31859960 ~ 31863157 (+) True LOC117597031
XR_004577981.1 lncRNA upstream 220059 31859960 ~ 31863157 (+) False LOC117597031
TU88141 lncRNA upstream 235350 31822525 ~ 31847866 (+) False LOC113540254
TU88150 lncRNA upstream 235466 31809876 ~ 31847750 (+) False LOC113540254
TU88389 lncRNA downstream 102070 32207361 ~ 32207824 (+) True G74573
TU88394 lncRNA downstream 178917 32284208 ~ 32296534 (+) True G74578
TU88396 lncRNA downstream 213141 32318432 ~ 32340074 (+) True G74580
XR_004577915.1 lncRNA downstream 427555 32532846 ~ 32533606 (+) True LOC117596964
XR_004577916.1 lncRNA downstream 584135 32689426 ~ 32690023 (+) True LOC117596965
XM_034304128.1 mRNA upstream 306418 31759889 ~ 31776798 (+) False LOC113540067
XM_034304129.1 mRNA upstream 306418 31769827 ~ 31776798 (+) False LOC113540067
XM_034303620.1 mRNA upstream 329549 31732612 ~ 31753667 (+) True smg7
XM_034303622.1 mRNA upstream 329549 31732613 ~ 31753667 (+) False smg7
XM_034303858.1 mRNA upstream 376947 31690175 ~ 31706269 (+) True lamc2
XM_034303860.1 mRNA downstream 211697 32316988 ~ 32319907 (+) True LOC117597128
XM_034303675.1 mRNA downstream 1029064 33134355 ~ 33148431 (+) False mmp14b
XM_026912173.2 mRNA downstream 1031760 33137051 ~ 33148431 (+) False mmp14b
XM_034304145.1 mRNA downstream 1069183 33174474 ~ 33249659 (+) True chd8
XM_034304147.1 mRNA downstream 1069183 33174474 ~ 33249659 (+) False chd8
TU88369 other upstream 40063 31987395 ~ 32043153 (+) False LOC117596940
TU88370 other upstream 40063 31987395 ~ 32043153 (+) False LOC117596940
LOC117596930 other upstream 47623 32034799 ~ 32035593 (+) True LOC117596930
LOC117596940 other upstream 84085 31998544 ~ 31999131 (+) True LOC117596940
LOC117597124 other upstream 108148 31974340 ~ 31975068 (+) True LOC117597124
LOC117596932 other downstream 107968 32213259 ~ 32214313 (+) True LOC117596932
LOC117597126 other downstream 142627 32247918 ~ 32261238 (+) True LOC117597126
LOC117597127 other downstream 164053 32269344 ~ 32272134 (+) True LOC117597127
LOC117596951 other downstream 168744 32274035 ~ 32274523 (+) True LOC117596951
LOC117596933 other downstream 174723 32280014 ~ 32280776 (+) True LOC117596933

Expression Profile