RNA id: XM_034303982.1


Basic Information

Item Value
RNA id XM_034303982.1
length 4232
RNA type mRNA
GC content 0.44
exon number 11
gene id zbtb41
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28112849 ~ 28152505 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cagtgaagggaaactgtaatgctacagcatacaacgACATCCTATACATTTTTATGCTTCCAACGTTGGGGGAAGacctacatatgggtgtaattGTCAGTTGTcatagtagtgtagtagtactCACCAGCCTCCTTTAAAATTGGTCTTCCAAACACAAAGATTTACACCTTAACCCAAAGTAGGAATTCAGGACATTTAAGGAATTAAGTGTAGAAGCAGGTGTAGAATTATACAGCACTGTGATGTTATGCTCATAGAAAAGATATCAGAATTGTTTGACCCATTTTGTAGatgttttataacatttttccAAAGTGTTGTTTTATACTTGGCATCGATATCAAAATGATACGCTCttgacatgtagtgcactaaatagCACGCAGACGACCTTATACTGTCATATTTAACGTTTGGCAAGCGGAAACAACCAATGAGCACTCAGCTTATTGCGACGTCAGGAGTATTGAACAGGGGGAGGTGCAGCgcccatttgttttgttgtggacattttttttgttcgCTCACTGTTTGCTGAtggaaaacacattttcttttgtttttttagaggTGTAAATACCACGTGAAGCTGTTTAATAAAGatgaagaagaaagtGAAGCACAACATGGCAAAGAAAAAGGTGGGCATAGAGGGAGAAGCTTCAGCACCTACAGTGGACAAATGTGAGGTCTCGACTGGTGATGAGTCTGCACGGGAAAACCGGCGTCTTCGAATTTCACAAAGCGACAGCTGCTTCCTTGAGTTCTTAAACAAGGACCGAAGTGCAGTGCCTTCGTTTTGCGACATAGCCATCACTGTTTGTGGGGAAATGTACCCAGCGCACAAGGTGGTGTTAGCATTTGGGAGCAGCTACTTCCATGCTAAACTGAGCGAAAACCCTCAGCTGGACCATATGACCTTTGACAACGTAGATAGTTCTACATTTCAACACTTGCTCAACTTTCTATACACGTCCGAATTGGAAGTGCAGCAGAGCCAAATTCCGTCTTTATCCGAGGCCGCGTGCTTCTTCGACATGATGGAGGCGGTGAATCTTCTAGCAGGTGAAGCAACACCAACCCGAGTTGCAGAAGAAGGCGAGAAGGAGGAGGAACTGCCAGTGGAGGAACCTGAGAGTTCTTCTTCAGGAGAGCTTAAGAAGCCTCAAACTCCTGGAGAGACCCAGTGTTTGCTTTGCAGCCGGACATTTTGCTATAAAAAGTCATTGGAGAACCACATGGCCAAGATGCACAGCCAAGCTGAGGTCGTTGAATCGACGACTCCCTCAAGCAGCAAACGCATGTCGACCCGTCAGAGGAGGACACCGATCAAATTTGAGAGCCAGGAGAGCAAGTACTGCCTCGGATTGGAGAACCGTAGGCAAAAGGATGCCCATGTGGATGAAGGAACTACCTCTGTCgaagaggatgatgatgatgacgatgatgaggatgatgacgATGTTAATAATGAAGAAAACCAGCATgaacaaagcaaagaaagagaacaaaaagaaacTCTGGAAGCGGAGACAAGTGTGAGAACTGAAGAGGATACAGAATGCAGGAAGGAGGTGGAGTCAAACTCTAGTCATGTGACCAAGGACCATGATGCATCAGTGGCTCAGAGCAGTGGTGGCCATGTTTACCCAGAGGGCCTTGCTCCAGTGATCATCCAAAGTGGCAACAAAAAGATGCTCAAATGCCCAAAGTGTGACAAGACATTTGACCGTATAGGAAAATATGAGAGTCACACGCGAGTACACACGAGAGAAAAGCCGTTTCAGTGTGATGTGTGTCTGCAACGCTACTCCACCAAATCCAACCTCACCGTGCACAAGAAGAAACACACTGCTGACGCTCCAGTGCAGAGAAAAGATCATAAGTGTCCATTCTGCAACAAACTTCATGCCAGCAGAAAGACGCTGGGCAAACATGTCAAAAGgtTCCATCCTGACAACATGCAGGAGTTTCTGAGtatgaggaagaagaagagtgaAGGCTGGAAGTGTGATATCTGCCACAAGTCATTCACACGGCGCCCCCACTTGGAGGAGCACATGATCTTACACTCTCAGCACCGCCCGTTTAAATGCGCCTACTGCGACGACTACTTCAAGTCCCGCTTTGCCCGACTGAAACACCAAGAAAAGTACCACTTAGGACCTTTCCCATGTGACATCTGTGGACGGCAGTTTAATGATACCGGCAACAGAAAGCGGCACATCGAGTGCACGCACGGAGGGAAGAGGAAGTGGACGTGCTTCCTGTGCGGCAAGTCGGTCCGAGAGAGGACAACGTTACGGGAGCACCTGAGGATCCACAGCGGGGAGAAACCACACCTGTGCAGCATCTGCGGACAAAGTTTCCGCCACGGCAGCTCCTACAGGCTCCATCTTCGCGTCCACCATGATGATAAACGCTATGAGTGCGAAGAATGTGGAAAAGCTTTCATTCGACACGATCATCTAAAGAAACACAAGAAAATACACACAGGTGAGAGAGCGCATCAGTGTGAAGAGTGCGGGAAGTGTTTCAGACGCGCCGATCACCTGAACGTCCACTACAAAAGTATTCACCTGGGAGAGAAAGTGTGGAGAAAGTACAAGGCTGTAGTGCACCAGTGTGAAGTGTGCAAGAAAGAGTTCAGAGGAAAAACCAATCTGATGACGCACTTCAGGACGCATTCAGGAGAGAAGCCTCACCGCTGTGTGATCTGCAACCAAACCTTCCGCATCAAGAAAACTCTGACCAAGCACATGGTCATCCACTCTGAGGTGCGCCCTTTCAGCTGCCCTCACTGCAGCGCCGCCTTCAAACGCAAGGACAAGCTTAAATACCATGTGGACCACGTCCACAGTGCGCGCCCTCCCAACCCAGCCTCATCCCAAACACCTGAAACGTCCCAAACTTCCAAATCGGCTGAAGTGTGCGTCCCTGTTGCTTTGGTGCCAGTCCAAATTCCTGAGGAAGCTGGAGCTGATCTCCAGCAGCAGCCGGGTGGATATCAGCCGTCCACTGATCTGGTCTTTCTGGAAAAATACACGCTCACTCCTCAGCCAGCCAACATCGTGCACCCGGTGCGGTCGGATCAGATCCTGGACCCGAGGGAGCCCTCATACCTCAGCACACTGCTCGGCCTCGACTCGGCCTCCTCTGAGCATGCTCAGTAGCGTTTTAAAAGCTCACCTAATATGATCATGAAACATCATTAgacttttattaacattttcccTTTTGTTCACATGcaatcctttttttatttattttagaattctCTAGTAAGAGTACTGTCAagggcaaaagtttgcatcccatTTGAAGACAAAATTTTTAACTAATATCAACCATTTAATATGTTTTGCAGATAAGTGTATCATAGTCAAAAGTGTATAATAAGATTATCATGAAAAACAAATTACAGTTACATCAAATCAGGTATACCACATtgttgctgaattcttgaatctgattggtccgatggtgttgattaattttcagctCTAATACATTTGaataagttatcgtttctatggtagtggctcattcacaggaaatTGTACAGCGGAAGTTCCACGTCATCTATAATAAtagataattataataaacgggtttagaaatgttatttagagaagaaaaaagaaaaccttttcattttatttgttatgtaACTTATGTACTTCCGTTATTTGCCATTCTTCCACACATTTCTGTAATACGCCGTTTGTCACAGAATGTTTTTTCCTTAGATCAGATCTGGAGattgaaaaattattttctttttttccccttgtcatacaatacacacatgttgcatgtttaacattttggagtgaaatcttttttttattttaaaaaataatttttttaaattataaaatagaagtacattttcactttttgcaTTCAGAAAGCGTGGGGGTGTGTGCAAACCTTTTGATTTCACACTGTAGTTACAGTTCTGAGCATGCTCACTACATATCCATCAAATGTGTTATTATGGCTAATAGACACAAGAACATTTCAAACGCAATAGATATGCAACAACATAGTGTGACTGGATGTGAGGGGTAAATAAACAGGATTTGGCCTGGTCTATTCTGTAATAAGCAAATTGCACATATGTCCTGTAATGGATACTATAGATGTTGTTACTGGTGATGTACTGGTGTTACTGGTTGTTACTGGTGATGTAGTGAGATAACATATAATGAAATCtgattatatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85674 lncRNA upstream 17575 28114451 ~ 28122142 (+) True G72276
TU85626 lncRNA upstream 127258 28011744 ~ 28012459 (+) True G72236
TU85492 lncRNA upstream 580290 27556204 ~ 27559427 (+) True LOC113540592
XR_003404048.2 lncRNA upstream 580607 27556085 ~ 27559110 (+) False LOC113540592
TU85711 lncRNA downstream 150346 28302851 ~ 28383408 (+) False insig1
TU85733 lncRNA downstream 163899 28316404 ~ 28328181 (+) False htr5ab
TU85742 lncRNA downstream 316443 28468948 ~ 28471765 (+) True G72336
TU85789 lncRNA downstream 422417 28574922 ~ 28578950 (+) True G72378
TU85820 lncRNA downstream 467319 28619824 ~ 28637201 (+) True G72404
XM_034303983.1 mRNA upstream 28710 28104505 ~ 28111007 (+) True pfn2l
XM_034303984.1 mRNA upstream 28710 28104508 ~ 28111007 (+) False pfn2l
XM_026935908.2 mRNA upstream 70451 28065068 ~ 28069266 (+) True LOC113539840
XM_026936375.2 mRNA downstream 100523 28253028 ~ 28260254 (+) True LOC113540125
XM_026937128.2 mRNA downstream 163899 28316404 ~ 28338173 (+) True htr5ab
XM_026937188.2 mRNA downstream 223809 28376314 ~ 28383422 (+) True insig1
XM_026936218.2 mRNA downstream 241431 28393936 ~ 28400141 (+) True en2a
XM_034303331.1 mRNA downstream 241431 28393936 ~ 28400141 (+) False en2a
trnat-ugu_8 other upstream 518334 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 519040 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 581815 27557765 ~ 27557902 (+) True LOC113540696
XR_003404069.1 other upstream 583069 27556517 ~ 27556648 (+) True LOC113540695
trnat-ugu_5 other upstream 650392 27489253 ~ 27489325 (+) True trnat-ugu_5
TU86406 other downstream 721851 28874356 ~ 28912104 (+) True G72873
TU86682 other downstream 1467488 29619993 ~ 29623037 (+) False asip2b
TU87615 other downstream 2593626 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 2593626 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 2909225 31061730 ~ 31097888 (+) False spsb4a

Expression Profile