RNA id: XM_026936432.2


Basic Information

Item Value
RNA id XM_026936432.2
length 3861
RNA type mRNA
GC content 0.46
exon number 22
gene id exoc6b
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16825208 ~ 16920946 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCAGCGCGCGGCGTTACGACTGGAGCTGAAGATGGCGAGCGCAGAGACCGCGGCGGAACATGAGCGGATCCTCCGGGAGATTGAAAGCACCGACACAAACTGTATCGGTCCCACACTCCGATCTGTGTACGATGGGCAAGAACATGGGCTCTTCATGGAGAAGCTGGAGGGGCGGATTCGCAACCACGACCGCGAGATCGAGAAGATGTGCAACCATCACTTCCAGGGCTTTGTGGACTCCATCACAGAGCTGCTTAAAGTTCGCGGAGAGGCGCAGAAACTCAAGGGTCAGGTGACTGAAACCAATCAGAAGCTGCAGAACAATGGCAAGGAGCTACTGGCGACGATGGACGAGTTGAGACGATGCCGTTTGCAACAGAGGAACATTGCCACCACCATCGACAAACTCACTCACTGCCTTCCAGtgctaGAAATGTACAGCAGACTGCAAGAACAGATGAAAGCCAAAAGatacTACCCCGCGTTGTGCACGTTGGAGCAGTTGGAGCAGAACTGCCTGCCGAAGGCGGGACAGTATCGTTTCTGCGCCATCATGGCTGAGAACATCCCAGTCTTGCGCACACACATCAGAGACGTCTCCATGTCTGACCTCAAAGACTTTCTGGAGAGCATACGTAAACACTCGGACAAAATTGGAGAGACTGCCATTAAACAGGCACAGGTGAGAAGCTCTCGCAACAGTGAGGTCACACGGCAGCAGCGGGCAGGCAGTGGGTGGAGATTGCGGAAGGAGGCGGGGTCAGGTACAGAGGTGGACAGGTCAGGTGGCAGCCCTCTCTCAGAAGAGGATTCTGGGATACTAGATGTAGAGGATGAGGATGACGATGAGGTTCCTGGTGCTCAGGACTTGGTGGACTTCTCACCTGTCTATCGCTGCTTGCATATCTACACAGTTCTAGGTGCCTGGGATACATTTGAGAACTACTACAGGAAACAGAGGAGGAAACAAGCTCGACTAGTGTTGCAGCCACATTCTAACATGCACGAAACCCTAGAGGGATACAGGCGGTACTTCAATCAAATTGTAGGtttttttgtaGTGGAGGACCACATCCTGCATACAACACAAGGCCTAGTGAACAGAGCTTATGTGGAGGAGTTATGGGAACTAGCTCTGTCAAAGACCATTGCAGCGCTCCGTACTCACTCATCATACTGCACTGACCCTGACCTGATTCTGGACCTGAAAAGCCTTATAGTCCTGTTTGCAGACACGCTACAGGGTTATGGGTTTCCAGTAAACCAGCTGTTTGACATGGTGCTTGAAATGAGAGATCAATATGGAGAGATTTTGCTGAAGAAGTGGAATCAGTCCTTTAGgCAAATCCTTGATCAAGACAATTATAGTCCTATCCCTGCAGCAACAGAAGAAGAGTACCAGCAAATCATAAGCCAATTCCCCTTCCAAGACTCAGAGCTAGACATGATGCCTTTCCCAAAGAAGTTTCCATTTTCTGAATTTGTACCCAAAGTCTACTCGCAACTCAAAGAGTTTATATATGCTTGCCTCAAATACTCGGAGGACCTGCACCTTAGTTCTACAGAAATTGATGACATGATACGCAAGTCTACTAACCTGCTGCTCACAAGAACTCTCAGTAACTGCCTGCAATATGCCATCAAGAAGAAGAATGTGGGATTAGCAGAGCTGGTTCAAATCATCGTAAACACGACACACCTTGAGTTGTCCTGTCACTACTTGGAAGAGTTCATCTCCAACATCACCAACGTGCCTCCAGACACAGTGAACACCACCAAACTGTACGGCACCTCCACCTTTAAGGATGCAAGGCATGCAGCAGAAGAGGAGATCTACACTAACCTGAATCTAAAGATTGATCAGTTCCTGCAGCTGGCAGATTATGATTGGATGGCAGCTCAAGGTGGGGGTCAGGCGAGTGACTACCTGAGTGACCTCATTGCCTTCCTCTGCAGCACCTTTGCTGTGTTCACACATCTGCCTGGAAAGGTTGCTCAGACAGCATGTATGTCTGCGTGTAAACATCTGTCCACCTCCTTGCTGCAGCTGCTACTTGAAGCTGATGTCAGGCAGGTATCTATGGGAGCACTCCAGCAGTTCAACGTGGACATcaaagagtgtgagaGGTTTGCCAGGGCCGGCCCGGTGCCTGGCTTCCAGGGGGACACTCTGCTGCTCGCCTTCATCGACTTGAGACAACTGTTGGACCTCTTTACTCAGTGGGATTGGTCTACATACCTTGCTGACTATGGACGTCCGACCTGCAAGTACCTGAGGGTCAGCCCGCATACCGCTCTGGCCCTCCTGGAGAAGATGAAGGACACTAGTCGGAAAAACAACATGTTCGCTCAGTTCCGTAAGAATGAGCGTGACAAGCAGAAGCTCATTGACACTGTCGTCAAGCAGCTGCGGAACCTTATTGCCAGCCACCAGTCCTGAGTCCACTGATGGTTGTATATCAGCTGACTTCCCCCGTGAACTTCTTGAATGGTCACTACCAGTAACAGCACCTACACCTTTGTAaaagagcaaaaacaatagacttgcaaaaaaaaaggaataggCAAGATTTGACAAATGGGTGCCATGGGTCTTTCAAATAATTATTTGTCTTACCCAAAGGGTACCATCTATGCCAGTTTTGCAGTCCTCGTTCTTAGCCTTTTAATGTCTTCCCAACAGCATCTCACTGGCGTCAGTATCAGTGAACCTTGAAAGTGCTCTCCCGTCTTCCTACATGACCATGTAAGCACAGCATAGGGTTACCAGTTGTGCAGCCCTTTTTAAGCCTGTCTCTATGAGACTTTGGTTATTAGCTTCACATATCTAGCAACTGCACATTTGACAATAGGGACTTTAAGCATTAATAGCTGCAGGGACGCTACAGTGCCCAGAAAAAAAGCCTGTGCATTTTTGAGTCTGGCTGCGTCATGCCACGGTAACCTTTGTGTTAACTACAGCAAAACCCACAGTTTACCAGTGTTTATATGAAATTTAGGTTATTTAGGAGTTAATTTAACCTTTTTACCATGAGTTCAATTGAACTATTGCTTGCACAGAATAAGGACACTATCATTTtgtatttcagatttatttcttgCCGCTGTAGCAGTTTCTTCACTACTCAATGCTGAAAGTCCCTAGTCTATTTTAAACCATCCTCAATAGAGAGAAGTAGAGTGATGTATTGAAACATCCTGTATATTGTAGTCTTAAGCCACTGCATAGTTCTCATTTCTGATAACACTGATGATTCTGTAATTCCCTTTAAATAGACAGTAAGGCAAAAACAAGTCGCAAATGAGTTCTGTTATAGCCTTAACTTACCGCAGGATCTCTATCAGCTACTGTTATTCTGTAGAGGCTAGTTATCAAATCTAGATAGAGCTCCAGCAAGGAATAGCTCACAGCATTGTTGcctgtataatgtgtgtgtttgtgtgagtgcaCCTACTTTTGTGCTTAGGGTCATTGTGGGTCTTTATTTAATTGATGGAATTTTCTCATCAAGTGGGTgcaatattactattattttcaAAGAGGGAAGAAATCATAAAATCTTAGGAACGTAggtaaatttttttattgtcaacACAAGAGGTCATGGTTTTGGTATTAATGGCTGTATATCACTTtatgtgcattgtgtgtgtgagcattgTCACTACcccattgtttgtttgtgtgcgtgCATAAACCCTGGCCCATTGTGAagggatagaaaataatcaaaacctAAAGGGAATAATTCTTCCCAAACTGTTCAGtttagggagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgaatagcATTTTGTGGTTGTGCTCTTTGtgttggcctttttt

Function

GO: NA

KEGG:

id description
K19985 EXOC6, SEC15; exocyst complex component 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77765 lncRNA upstream 54365 16770605 ~ 16770843 (+) True G65663
TU77754 lncRNA upstream 61747 16758260 ~ 16763461 (+) False LOC113539905
TU78081 lncRNA downstream 414551 17335497 ~ 17392798 (+) True arrb2b
TU78094 lncRNA downstream 436392 17357338 ~ 17372139 (+) True G65938
TU78095 lncRNA downstream 437540 17358486 ~ 17359569 (+) True G65939
TU78075 lncRNA downstream 481613 17402559 ~ 17403879 (+) True G65927
TU78076 lncRNA downstream 481613 17402559 ~ 17403855 (+) False G65927
XM_026936126.2 mRNA upstream 6674 16811400 ~ 16818534 (+) False zgc:101765
XM_034303409.1 mRNA upstream 6674 16815798 ~ 16818534 (+) False zgc:101765
XM_026936125.2 mRNA upstream 6674 16815851 ~ 16818534 (+) True zgc:101765
XM_026937161.2 mRNA upstream 21192 16776894 ~ 16804016 (+) True ppp2r5b
XM_026937051.2 mRNA upstream 48379 16772399 ~ 16776829 (+) True batf2
XM_026936966.2 mRNA downstream 18515 16939461 ~ 16960809 (+) True LOC113540460
XM_034304012.1 mRNA downstream 20098 16941044 ~ 16960809 (+) False LOC113540460
XM_026936043.2 mRNA downstream 264075 17185021 ~ 17189452 (+) True LOC113539921
XM_026936021.2 mRNA downstream 287557 17208503 ~ 17275182 (+) True si:ch73-211e3.1
XM_026936036.2 mRNA downstream 358540 17279486 ~ 17307870 (+) True mtm1
XR_003404112.1 other upstream 63333 16761804 ~ 16761875 (+) True LOC113540742
XR_003404114.1 other upstream 63561 16761572 ~ 16761647 (+) True LOC113540744
XR_003404113.1 other upstream 63870 16761266 ~ 16761338 (+) True LOC113540743
XR_003404115.1 other upstream 64101 16760981 ~ 16761107 (+) True LOC113540745
XR_003404111.1 other upstream 64389 16760749 ~ 16760819 (+) True LOC113540741
TU78354 other downstream 688758 17609704 ~ 17620079 (+) True LOC113539940
trnat-agu other downstream 843515 17764461 ~ 17764534 (+) True trnat-agu
XR_003403977.2 other downstream 1079212 18000158 ~ 18010962 (+) False ctdnep1b
XR_004577948.1 other downstream 1192498 18113444 ~ 18130505 (+) False frem1a
TU78855 other downstream 1276366 18197312 ~ 18208564 (+) True G66492

Expression Profile