RNA id: XM_026936433.2


Basic Information

Item Value
RNA id XM_026936433.2
length 5966
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC113540153
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 14576397 ~ 14622524 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGAGCAAGAACGGGCTTGGATTTGGGAGCTCTTAAAACTTCCAGCTCGTGGAAGAGAGCAGCTGCATTTATCGATAGGCTGATGAATCCAGACCCCTCCTCctattcttcctcctcctcttcacaAAAACGGCTCTCGTGCAGGAGAGTGGGTCTGCCATGATAAAGAGAGACAGCACCGCGATCCCCACTAGACAGCGCGAGTCCGTCTCCCTCGCCGTCATTTAATCGGAGGAAAGCGAGAGAGCGCGGGCACGATGCTGCCTCTCACCGCCGGCTCTcgcgcagcagcagcagcagcagcatcttGCTCAGGCGGAAACCAGGGCTGCTGCTGATTCCTGCGGATCCGCGCTCTGCTCCTGTCAAACGCTCGGAAATGAAGAGAATGAACCCTCGCTGGAAGTCTTCCCCGATGTGGCCGTCCGGAGTGGGCAGCAGATTGCCGTGTCCTCGCGAGTCGGCGCTGCGCAGAGCGGCCATCAGCGGAAACGTGCTCGCGCTGCCGCCGTATCACGTGCCCACGGGCCGGAGCGTGCGCGTCTTCATCTGCGCCAACCCAGACGATACGGAGGCAGAGAGGAATGCCCTGAAAGAACACGTCTACCCCAAGCTGAGGGACTTCTGTAGAGAAAACTATGGCATTGAGTTCCAGgtggtGGACCTGTACTGGGGTGTGGACCCAGAGGAGTGGGACAGTCCAGAACTACAGAGACTGCGGATGAAGCTTCTAGAAGAATGCCTGAAGACATCTGCCGGTCCATGCTTTGTTgGTTTGGTGGGGGAGAAGTATGGCAGCATTCGTGTTCCAGGGGAGGTGGAATCAGCTGAGTTTGAAATGATTCTAGATGCGGCAGTGGAAGCGGGTCTGGATACACGGATCCTGGAGGAGTGGTACTGCCGGGATGAAAACTCAGTACCACCGGCATACTACCTCAAACCCAAAGCtgagatgctgaaaaactaTCAGAACTCGatGGAGTCGAGCAGTGTTGCAAAGGCCAAGAATGCTAAGGCATGGAGAGCAGTCTCTGAAGAAATCAAGAAAATCTTCAGAACTGCAGTCCTACAACTACAAGAGAAAGGAACCATGAAAAGTGCACAGGCCAAAAAATTTCTTTGTTCGGCACTGGAGGATGAATTGGACTTTGCTTTAGGAAAACAGACCCCAGCCTTcctgaagaagtgtgtgtgttacattcgCAAAATCTCCAACTTCGACCGCTTTGCCAAGATCCCAGACATGACCCGCTACATGGACATTATTATGAGTGGGGATCGTGTCATGAGGAACCAGGAGGCCTATGAGCGGCTTCTGAAAGTCCGAGATGAGTTTATCCCCACAATAGTCGCAGCATCCAACCTCCGTGTCTATTCCTCGGTCACCCATTGCGACATGAAGCTGGGCTACTCCCAAGAGGTAGAGAGTCACTATGTGGAGGGTCTGTGTAAGCAGTTCTACGAGGACATGGTCGACATTATTCAAGCTACTGTCCAACAAAACTTTGACACAGAAACAGATCCACTGTACGACGAGATCATACAACATCTTTCACTGTGCAAGACATTTTCCTCGTTTTATGTGTATAAAAGTGAGGTCCTGGATATGGTGCAGGAATACCTGTACCCATCCAAAGGAGGGAGAATATTGCCCCTAGTCGTTTATGGAGGGCCGTGTACAGGAAAGACGCTGTTGCTTGCTGAGGTAGCTAAACAGgcATACTCATGGCTTCAGAAAGAAATGGGGCCAGAAACAGATCCTGTCATCATTGTTCGCTTCATTGGTTCCTCCGACCTCTCTACAGACCTCCGCAACCTCCTCCAAAGTATTTGTGAGCAGATTGCCATAAACTATCACTGCTTAATCCACTACCTACAAAAGATTGAAGAGATGAGGGAATTGTTGATTAACCTTCTGGGAGAGTCATCCTTCCATCGACCCCTAGTGATCATACTGGATTCCTTGGAACAGCTGTCAGAAGCAGATGAGGCACGTAAGCTCTGGTGGTTGCCTATCCACCTTCCTTGTACAGTCCGCATTGTGGTATCGACTTTGCCTAACAAACATGGGATACTACAGAAATTACGTTGCCTGATTCATGATGAGGATTGCTATGTAGAATTGACACAAAGAGACCGTAAGGCATGTAGCCAGACACTAAAACAGCAACTTCTGAGTGTCAAACGAAAAGTAACCTCAGGTCaacaaatatatgtaaatgaagCCCTGGCTAAATGTACACTGCCCATGTTTGTCAACCTTATCTATCGTGAGGTGGTACACTGGCGCTCACACAAAGATGTTGATGAAAAGTCCCTTTGCTCAACAGTACATGAGAGTATAGAACATCTCTTTATTTCCATTGAAAATAAGCTGGGGTCCCACTTTGTCTTTCGTGCATTGGGATACATTACAATGGCACGTGTAGGGTTGACGGAGGTGGAACTGGAGGATATACTATCTTTGGACAATAGTGTACTTGGAGACATCATGGTCAGCTCAAATCTAAAGAGTCCACTGCGAATCTCCTATGATCTCATTGCTCAACTAAGAGAAGAGCTAGAGGGTTACTTGGTGGAGCGTCAGGTTCGGAACGTAACCCTGATGGTGTGGGCAAACAGGCATCTGCATCTCATTGCACAAAAGCTGTATCTCAGTAATGAAGAAGATGTGCATCAAATGCACAGCCTTTTAGCTGAGTATTTTCTTGGGGTATGGGCAGGTGGTAGAAAGAAGATTTTCCACTGTGACAACAATCACTTTGCCTCATTAAACATCTCTCAGCATCGGAACCCTCACAACCAACAAAGCCTTCGTGGCCATGACAAAGCCTCTGCTGACAAGCATTCTTATGACCGGCAAACACCAGAACAACCTTGGGTGTTCCAGTGCAACTTACTTGAGCCAGATATCTTCTTTGTCAATCACAGAAAAATGACAGAACTGTTGTTTCATTTGACAAGGAGTGGGCGGACAGATGACCTCATGTATGGTGTCATCATGAACTTCAGTTGGCTGTATACAATGATAAAGATTGGACAATTTGACAAGGCCTTGTCAGACATTGACTTGGCGTACAGCTACTCACAGGAAAAGGAGCTCAAGTTCCTTGCTAGCACACTACGAAGTATAAAGGTCAAAGTAATCAAGAACCCTGCCTCACTATCTGCTGAGCTTCAGCAAAGACTTCTTCCTGTGGTCACATCACTTCCCAAACTCCGACATCTCTTACTAGAGTGTGACAAGGATGGACCCAAATACTGCTCCATAGTGCCACTCCACTCTTCCATGGATGTTACATACAGTCCTGAGAGACTACCGCTGTGCTCTAGTTATATGCAGATTGTTGAGATTCTACCTACCCTGGCTCCCAACATTGTAATTGCAGCTCTTGAGGATGGCTCAGTCAGTACATGGGATGTAGAGAGCAGACAGTTGCTGAGACAGATCGACACAGCAAGGTCAGTTGTGCTTGGTGTCAGGCTCACCACAGATGAGAAGTACCTTGTTGTTGCCACTACAAAAAACACACTACTAATTTATGACAACCATAAATCGTGTTTGTTGTCAGAGGTGGAGGTAAAAGGCTCAAAGCACTGTGGCATCACAGGTGGGGTGGCATTCATTAATGGATTTACCTTATCCAGCCCCCATGCCTTAGCTTGGCTGGAGGCTAGTAAAGATGTCAATGTGATTGACTTGCAGTATGGTTGGCCCCTATACCAGTTCCATTGCTGGTACGAAGTAACCTGTGTTGAATGCTCCCCAGATGGGATGTATGCTTTCTGTGGGCAATATTTAAACACCACCACTATATTCCACCTAGGAAGTGGGGATAAGCTTGCAACAGTGACCTCTGAGTTTTCTGGTGGATTTGTGAAGTCCATCCTGGTTCTAGACACAATCCATCAAATGGTGATGATTGACAATGAAGGTAGTCTTTCTGTCTGGAACACCAAAGATATCACAAATCCCAGGCTTATGGAGGACTATGACTGCCGAGGGGATGATAGTGAGGTGGTAGGTATAGAATTATCTGAGGATCAGAAATCAGTACTTATTTGCAAAGCCAGAAGCATTGAGGTGCTTGACACCAAGCTTTGGAAGATGGTAGAGAAGTTTAAGGCCAAACGTAGTGAGAGATTTGTGGCTGCTGTTCTGTCAAAGAATGGCCAAAGTATTGTAGCATCAATGGAAAATACTTCATCCATATTTGTGTGGAGAAGAGACAGTGGGCAGTGCATGGCTAGTTTAATAGAGATATCAGGAGCCATCGTCAAGTTGATCAAGTCAACACACCATAACTTGCTTTTGTCCGTAGCCAGCAGTGGGGTTCTCTCAGTTTGggatattgatattattacaGCAATGTCAAACATTGACAAAACAGGGAAACGGATCCAAAGTGTACAGCTATCAGGCAGGGAAGACTTTGTCTACACAATGGATGGGTCTGAAGCCATCCATAAGTGGAACTTCAGCACAGGTTTCATTGAGATGGTGTTTAAACATGAAGGCCTTGTGGAGAACTGTGTTCTCACCACATCTGGTGACCTTATGGTGACATCTGATGACAAATGTAGCCAATACATCTGGCAGACTGCCACAGGTGAAAATATCTTCCGGATCAATGGCCAAAAAATATCCCAACTTCTCATCACCCATAATGACCAATTTGTCGTTTCTCTCTGTGAACAAAATGCCTCACGTGTCTGGAGGCTTGCTACTGGACACAAAGTGTGCAACATCCTGGTAACCCTCCAGCATGCTCTCATCACCACAGCCAACACTTTCCTGGTTGGTACAACTAAAAACAAGCTGTTGGCTGTCAGCTTGTGGTCCGGCAGTGTATCCAAGAAGTTTGTCTGTGATGATGGGATCACAATCATAAATTTTAAGCTAATTCCAGACAGTCCAGACTATGTTGTCTTCATCACctccacagagactgttttCATATGGAGTGTAGCTGATGAGTCTGTCTGCAGAAGGGTGCAACTGCCAAGCAACTTCTTGAAGAACTTGGAAGACTTCCAAATCTCACCAAATGGAAAGTTGGGAATTGTATCTAAAGGAGATGACAACATTAATGTTCTAGATCTACACAGTGGTAAACTGCGCTTAGTCCATGCTGCAGGCATAATATGGAGGCAAAAGTTATCAAGAGATGGACGGTACTTGGTCTACATTTGTTTCCGAAATTGTGATGAGGACGATGATGCAGGTGTGGTTTCTAGTTTAATTGTCATGCGACTTGCTGATGGAAAAAGTATTGGTACCTGTTCTCTCTACAAGACACCAACCTACTTGTGCCTATCACAACGAGCACTCAACATTATTATTGGCTTTGAGGATGGCAGTATTGGGACCTACACAGTTGTGGACCGGGTGGATGCAGCCCTCAAAATCAAGATTGCCACCTCTAACAGCCGGCAGATTGTTAACAATGCCTCACAGAAAATACGACCCAAGTGCAGCACCAATGCCTTCAAGACCATTGCTGATTGCATGTGGAGGGAGTCAACTGAAGTTTTCTCTCGAGATAGCCCCATCAATGTCTCCGACAGTGGGGAGCCtgaaacaacaacaccaacaaaaaAGACGGAGTTACTGCAATGAGAATTCTTCAGGAAGTTAGTGGTATAGATGAATGGGACCAGATTTGGATGCAGTTGATTCTTGTTTACAGCAACCTTGTGATTCAGTTGCACAAATCAGTCCTCTGGGTACTACACAGTTGATACTGGCCAATTACTATCACGCTGCAGTTGTATTTAGTCAGGTCACCTTCATCCTGTTGTCCCTCATTTGGTGACTTGTCATACTATCTGTTATATACATCTTtgatatattacaaatacatcGTTTTATTCAAAACAAGCCATAATATTACTTTATACAGAAACATAGAAATGGTATATATTTGTAGCCATAACACATatatgcttttttcttttcttttttt

Function

GO: NA

KEGG:

id description
K24734 NWD; NACHT domain- and WD repeat-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76370 lncRNA upstream 279925 14296270 ~ 14296472 (+) True G64462
TU76367 lncRNA upstream 281136 14295002 ~ 14295261 (+) True G64459
TU76204 lncRNA upstream 519510 14056527 ~ 14056887 (+) True G64308
TU75926 lncRNA upstream 533983 14041968 ~ 14042414 (+) True G64095
TU75936 lncRNA upstream 558728 14017286 ~ 14017669 (+) True G64105
TU76581 lncRNA downstream 57682 14680206 ~ 14680813 (+) True G64668
TU76586 lncRNA downstream 139811 14762335 ~ 14762596 (+) True G64673
XR_004578083.1 lncRNA downstream 354802 14977326 ~ 15011493 (+) True LOC117597182
XR_004578084.1 lncRNA downstream 354802 14977326 ~ 15011493 (+) False LOC117597182
TU76906 lncRNA downstream 578785 15201309 ~ 15201528 (+) True G64963
XM_026936436.2 mRNA upstream 196846 14356048 ~ 14379551 (+) True LOC113540157
XM_026937055.2 mRNA upstream 307057 14255744 ~ 14269340 (+) True brms1
XM_034304046.1 mRNA upstream 307057 14255744 ~ 14269340 (+) False brms1
XM_034303973.1 mRNA upstream 322507 14229973 ~ 14253890 (+) True ppp1r14bb
XM_026936979.2 mRNA upstream 323785 14229982 ~ 14252612 (+) False ppp1r14bb
XM_026936434.2 mRNA downstream 9536 14632060 ~ 14647239 (+) False zgc:194930
XM_034304076.1 mRNA downstream 10207 14632731 ~ 14647239 (+) False zgc:194930
XM_034304075.1 mRNA downstream 15966 14638490 ~ 14647240 (+) True zgc:194930
XM_034303978.1 mRNA downstream 63730 14686254 ~ 14761565 (+) True adam19a
XM_026937085.2 mRNA downstream 201578 14824102 ~ 14829911 (+) True paqr9
XR_004578085.1 other upstream 307057 14255744 ~ 14269340 (+) False brms1
XR_004577999.1 other upstream 856943 13705576 ~ 13719454 (+) False gc2
XR_003404009.2 other upstream 1014131 13558623 ~ 13562266 (+) True cited1
TU75730 other upstream 1101360 13470769 ~ 13475037 (+) False LOC113539889
TU75687 other upstream 1157701 13418377 ~ 13418696 (+) True G63903
XR_004578093.1 other downstream 9506 14632030 ~ 14658936 (+) False zgc:194930
XR_003403994.2 other downstream 1400671 16023195 ~ 16039984 (+) False LOC113540079
XR_004578074.1 other downstream 1687689 16310213 ~ 16319166 (+) False LOC113539780
XR_003404046.2 other downstream 1745432 16367956 ~ 16370684 (+) False LOC113540582
XR_003404110.1 other downstream 2137995 16760519 ~ 16760583 (+) True LOC113540740

Expression Profile