RNA id: XM_034304075.1


Basic Information

Item Value
RNA id XM_034304075.1
length 3392
RNA type mRNA
GC content 0.39
exon number 3
gene id zgc:194930
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 14632030 ~ 14658936 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gattggacaattgcatgaatgtgcaggggtATACGTTATTAGTCATTTAATCAAGACAATAGTTGAAGCCATGAATTCTTTGAACAGACTTTGTTAACACAGACCGTGTTATCATGGTATCCACTATGGTCTTAAGTCTATTAAGACCATAGTGGAAGGAAATGAAACCAGAGTTCCTATGGGATTTGTTTATTGTGGCCTTTGTTGATCCTCTGGTATGctagtgattgtgtgtgtgtgtttgtgcgggCCCATATTCTTTCATTGTTTAAGGGAGATTTACTATATGATCACCTTGTCCCTTAAATGACTCTGTAGTATCGCAGGTATTCATACACTTTAACGCAACAATCCAAGCTCTTGTTCAGACAATATTTTAAAACGAACTAAACATTTTATGTATGTAAGCATGATGCATATTTACATCTCATgtccaggtgagagagagaaaaaaataaagaaatttccTGGGTAAAGGAAAAAGGTAAAGGCCTCTTGTCTCTAGTACAACACAAAGCATTTAACTCTTTAAGTAAGCCATCTAGAACAGAGTGCTAGAGGCTCAGTGTCCTGCTGAGATTAGAAATTCTCTCTTCTTGTTCATTTCAATGGAGGAAGAGCTGCCAATGCAATACGCTCCACACTTCAATTTGCAGCACTTTGGGCTGGCAATCTTgaataatctctctctttcacctctCGCTCTTTTTCCAAGATGGAGCATTTCAATTTCCAGCGGCCTCCTGAAGATGCCCTGCTATCCAGCTGTCCAGATGGGGTGCAGATGCTGTAGCATGATAAAAAGTTACATCTATGAGCCTACAGACCCTGTGGAAGTCAATGGGCTGAAACAGGATCCTTCCACCAATTCCTTAGTCTCTTCTTACCAATGTCACAGTCAGTCAGATGTTGGGAAAAAACAAGGCTTCCACAATTTGGGCTACACCAGCAACAGCAACCTCAGCAAATCTGACATTGAAAACAATCACATAAACCAGGCTAGATCGAACCAACCCCAGACAGCAGGGGGCAACTCTAGTCTCTATATTTTGCACCCAGACGGAAGGGTCCCCCCAATCCTTCCTAGTGCTCCACCCATATGCCCTGTTTCACCATTGGGCACAGAACCAGGGAAACAAACAGAGAGGTTCCGAGACTCAGGCCTGGGAAATGGGTCTGATGGCTACTTGTGCAGAACGGACCAGGAAGAGGAAGGAAGACAGGGAGCAGGGGACACGGCAGACGAGGAGAGCGTCATATCAGTGGACATCCATACTAGCAGCACCAGCCTCTCCTCAGCCGACACCAAGCTCGTGATAGACGAAGATTCATCATTCTCCCGGAAAGCGGGTTCGAAGGAAAAAGACACAGAGGACACTGTGAGTGTCACAGACTCTATGGTGGCGGAAGCACTCGCTGCCTTGGAGGCGGCCACTGCAGGGGAGGAGTATGAGTAAGAACTGGAGCTCACCACCTGTCATGGCGCCTGGACCTGACATGAATGAACACCACATATGGccaaaaaagatattttttccCTTATATACGTTTCAATCACCAAGTCTTCAtgaaggattttttaaatgaagttttaAACAGACTCCTATTTGTTTACagttcatactgtatataaacagaaTATATAATATGGATATATTCTGCCAAGCATATTGGTAGCATGGAGTGTATGGGCTGTTACTTTCTGAACCTTTCTCTGTGCCTTTTTATAGTCTATGCAAGTCCATACTACTGTGATgagcatttaattattttgtttagttgACAATCTGCAATATTCTCCCTAACTTCATGATGATACTATAAGCCTGAGTGGGCAGAGAGAACAGTTGTAGCAAGTGAAGTTGTGAATGTCCAAGGGGCTTATAATTCATAGAAAAGGGGCACTGTTGTTCTTCCTTCCCAAAATGTGAACACCTTTCAGTGGAACCGGGGCTTTGACCAGGTACACCCACATAGGAAGAGCTTTATTCTCAAACTAATTCTTAAACTGATAAatccaacactgtaaacatgtcCCTTTTGTCTTATTTTGGTCTTAATTGATCagtttataaagtttttttattattaaatttctaATCAGGCTGATGTTAAACACATTAATCCACTCATCGACATTTTAGCCTTGATTACAGATATCTTGATTCCTCTAATGTCTAAAGAAAGCTTCTGTTCATTTGGGGTTGAAGTGAGCATCCAACTGACATTAACAATGAATCCTAGTTATCACTGCCTCTCTAGTTACTTCGGCAGCTTTAAGAGAACCACTGAGAGGACCCTCTCTTCAAAATAGGAGAGTGGGTTCAAGTTTGAACTGCTGGGAAAACAGTAGCACAGGTTCCACATCCCCCTACTGCAGGAAGTTATATGCTGAGAAATGACACCTACATTTTATGCAGACTTTTCataaagaattattattatagtgctAACTGCTGTGACGTTATTTATGCAGTTGACATAGCTGGGGCCAATGACAGTAGttgacctttaaaaaaaaaattttttttttaaaagtgaaactgTGGTTAACTGAACGAGGCTCAAGATTTCAGTTGGTGACTTGATGTGAGGAAGGACTTTGCATTTCCATAAAACTATGAAGAAGAAGCACAGTAAAACACTTTTCTCAGCCTAGCAGGTAAATGTAATCTTGCATTATcagccattttattttctcaaatGCTACAGTTAAACTTTCAGTAGTAAAGGATTCTGAATGTGTGGactgtgtgttacagtacagccaaaaatattttcttttgcaaaatgtatatatgtaaatgcaCAAGCAGTCACTGTTTCATCTACGATATTTATTGTCTTTCATGATGAGATCAATACAGAtgtgtattttaaaacaattttgtcattttcaaaaTCTGCTccacttaatttaatttaacaagagataaggaaaaaataataaagcacaaTGCCTGTGATCATGACTGGTACTGTTGGTAATTTAGTGATATTTCTAAGGAATATGCCACAAGACACAAGGCAAAAGTCTTCCAGACAGCAATAGACCAAGACACTCCAACTGTACATGAGCTTGTGGGTGAGTGCAGTCTTCTGTTTActtaaatgctaaaaaataagAACTATGGCTTTATACTAGCCAGTAGTGCTGCAACtaacaattctttttttaatatttcattaatttatacTTGGGTAATCTAttgatttttataaaataccaaaaatatttatttaaaaatacatctttGCAGCATTATAATCAATTAATATTACTTCAGAACTCTTAACTAGGTTCAATTAAATAACAGGTCACTAACTGCAATACAGCATTACTGACAATTACCAGATAATCGGTCACAGCATGGCCCTGATTTATTAATTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76370 lncRNA upstream 342018 14296270 ~ 14296472 (+) True G64462
TU76367 lncRNA upstream 343229 14295002 ~ 14295261 (+) True G64459
TU76204 lncRNA upstream 581603 14056527 ~ 14056887 (+) True G64308
TU75926 lncRNA upstream 596076 14041968 ~ 14042414 (+) True G64095
TU75936 lncRNA upstream 620821 14017286 ~ 14017669 (+) True G64105
TU76581 lncRNA downstream 32966 14680206 ~ 14680813 (+) True G64668
TU76586 lncRNA downstream 115095 14762335 ~ 14762596 (+) True G64673
XR_004578083.1 lncRNA downstream 330086 14977326 ~ 15011493 (+) True LOC117597182
XR_004578084.1 lncRNA downstream 330086 14977326 ~ 15011493 (+) False LOC117597182
TU76906 lncRNA downstream 554069 15201309 ~ 15201528 (+) True G64963
XM_026936433.2 mRNA upstream 15966 14576397 ~ 14622524 (+) True LOC113540153
XM_026936436.2 mRNA upstream 258939 14356048 ~ 14379551 (+) True LOC113540157
XM_026937055.2 mRNA upstream 369150 14255744 ~ 14269340 (+) True brms1
XM_034304046.1 mRNA upstream 369150 14255744 ~ 14269340 (+) False brms1
XM_026936979.2 mRNA upstream 385878 14229982 ~ 14252612 (+) False ppp1r14bb
XM_034303978.1 mRNA downstream 39014 14686254 ~ 14761565 (+) True adam19a
XM_026937085.2 mRNA downstream 176862 14824102 ~ 14829911 (+) True paqr9
XM_026936678.2 mRNA downstream 242060 14889300 ~ 14968601 (+) True zmp:0000000660
XM_026936099.2 mRNA downstream 1257115 15904355 ~ 15916921 (+) False cckar
XM_034304111.1 mRNA downstream 1262268 15909508 ~ 15916921 (+) True cckar
XR_004578085.1 other upstream 369150 14255744 ~ 14269340 (+) False brms1
XR_004577999.1 other upstream 919036 13705576 ~ 13719454 (+) False gc2
XR_003404009.2 other upstream 1076224 13558623 ~ 13562266 (+) True cited1
TU75730 other upstream 1163453 13470769 ~ 13475037 (+) False LOC113539889
TU75687 other upstream 1219794 13418377 ~ 13418696 (+) True G63903
XR_003403994.2 other downstream 1375955 16023195 ~ 16039984 (+) False LOC113540079
XR_004578074.1 other downstream 1662973 16310213 ~ 16319166 (+) False LOC113539780
XR_003404046.2 other downstream 1720716 16367956 ~ 16370684 (+) False LOC113540582
XR_003404110.1 other downstream 2113279 16760519 ~ 16760583 (+) True LOC113540740
XR_003404111.1 other downstream 2113509 16760749 ~ 16760819 (+) True LOC113540741

Expression Profile