RNA id: XM_026936438.2


Basic Information

Item Value
RNA id XM_026936438.2
length 6765
RNA type mRNA
GC content 0.51
exon number 49
gene id col4a6
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13798180 ~ 13880674 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATGTGAGGGCGGTGTGATTGACagctggaagccccgcccccgcGGCTGAGCAGCGCACGCAGCACGGTGAACGGTGTGTGAGTCGGGCAGCGACGCGGCGGATTTCAGCACTCGAGTTCGATGAACCGCGCAGCGCGCGCTGAGCGGATCTGAAGCCTCTGCTCGCCGGTGAACAGAGGAGACACGACACATAAACCTTTTCTCCCAAATCACACAATGAAGCTTTGGTTTTGGGTTTTTGCTGTTGTCTTGTCTCTGGACTCTACATACGCAgGGTCGAAGACTGATGAACCATGTGCAGGGCGTGACTGTAGTGGAAGATGTCCCTGTCCTCTGATAAAAGGTAGCAGGGGTCAGCCTGGGCCTTTAGGACCGCCTGGCCCCACTGGACTCGATGGCTTTATTGGGGCCCCAGGGCCTGTGGGACCTAAAGGAGAAAGAGGCCATGGTGGTCACTCAGGACCATCTGGACCCAAAGGGGACAAGGGTCCAGTGGGTGTTCCTGGTTTTCCAGGTATCAATGGTATTCCTGGTTACTCAGGCCAGGAGGGACCACCGGGACTGCCAGGAGCAGACGGCTGTAATGGCACACAAGGTGACCCTGGTTTCCCCGCCGGCTTCCCTgggagacctggcaaccctggacCTCGGGGATTACCTGGTGTCAAAGGGCAAAAAGGAGAACCACGGTTCATTTCTACAACCTCGGTTCCTTTTGGTCCTGCTGGGGAACGCGGTCTTCCTGGTCCAGTTGGTCCCCCGGGTCCCATCGGCCCCTTCGGTTTACCTGGTTACCCTggACGTCCTGGTCCTCCAGGTCCCCCTGGGCCAACAGGAAACCCTGGTCAGGGTTacgaaggagagagaggagagaagGGAGATGCGGGTCTGCCGGGACTCAGGGGTGCGCCGGCTGCTCTGTTAGGCTCGCCAGCTATAAGCACAATCAACAAAGGAGAGAAGGGAGACGTGGGCCTGCCCGGTGACCCAGGCCGCCCACTGGTCAATGGAGTTGTGGAGTTTGTTGGAGTTCCAAAAGGAGACAAAGGAACTCAGGGTGATATTGGCTATACTGGTGTTCCAGGACTCCCAGGTCCACAAGGACCCCCAGGCCCATATGGCTACAAGGGGGAATATGGAGAGAAGGGAATTCCCGGATTACCTGGTGTGAGGGGTCCTCCTGGTTTTAATGGACCACTTGGAGAAGATGGCCTAAAAGGGTATCGTGGGAGCCCTGGTCTCTTTGGATTGGGAGGCATTCCAGGCCCTAAAGGTTATAGGGGAGAACCAGGACCACCAGGGCGAATCTTTGCTGGTGAACAAGAGTTAGTTTTACAAGGTCCTCCTGGTGATCCTGGTTATGATGGCCTTCCAGGCCTGGTTGGAGATGCAGGTTTACCAGGATCTCCTGGACTGCCAGGTGACCCTGGATCATCATTCTTCCAACCAGGTATTCCAGGGCTTCCTGGCTTCCCTGGTTCTACTGGACCTAAGGGAGAGAAGGGAGACCCAGGTCTTTCAAGCTTCAGCCCTTCTGGTTTGCCTGGAGACAGAGGTTTACCTGGACCTCCAGGTCCACCTGGACCTCCAGGTCTAACTCAAGCAACTCTGTTTCCTGAGGACCTGACTGGACCACCAGGTGTAAAAGGCAGCGGAGGTCAACAGGGACAGAAAGGTTTTAAAGGAACTAAAGGTGAAACTGGACTTTGTGATTGCTTTGGTGAAGACATCTCTGGCAGAAAGGGTCCTCAAGGATTTCAAGGGCTCCCTGGTTTCACTGGGCTCAGTGGGCGGAAAGGAGAAGTTGGTGACTCAGGACCTTCAGGACTCCGTGGACCGCAGGGGCCAAGTGGTCGTCCTGGAGAGCGTGGCTTTACTGGGACtaaaggagagaaaggaaacaCTTATTATGCTGTTAGACGAGGACAGAAGGGTGACATTGGCCAGCAAGGGCCTGCTGGTCCTACAGGAGACACTGGACAACCTGGAAGAAGTGGAGCCCCTGGTTTTCCTGGAGCACCAGGACTACCGGGAGATCCTGGTTTTGGGGTGATTGGAGACAGAGGATATCCTGGATCTCCTGGTTTTAAGGGCCGCCCTGGTGCAGCCGGTGAGCCTGGCATTGGCTACCCAGGCGCCGCTGGTGTTAGAGGGTTTACAGGCAGCCCTGGTATCAGTGGGCTTCCAGGGCAGCCAGGACCTCCAGGACCACCAGGTGACAGCTGTGGGCAGGCGGGGCTTAATGAAGCCTCTTTCACAAAGGGAGGACTGTCACTGCCCTGCATAATTCCAGGAGAACCTGGGAATCCAGGTTTCCCCGGACTGCCTGGTGTGTCAGGCCCGAAAGGACAGCAGGGTCCACCAGGACTAAGTGGAAGGCCAGGTACTGATGGGTCGAAAGGTGAGAGAGGAGAATCAGGCAGTGGAGGTCAACCTGGAGCACAAGGCTTTCCTGGACCAAGAGGAGATCCAGGTTTACCAGGTACTACAGAAAATGGCTTTCAAGGTGCTCCGGGAAAAGATGGCCTTCCTGGGTTTCAAGGACCAATAGGAGAACCTGGCGAAACTTTAGGGGCAGCTCAAGGAATACCTGGACTTCCAGGACAAAGAGGAGAGCTTGGAGACAAGGGCCAACCAGGCACTTCTGGATTATCAGGCGGACGTGGTTTTGATGGACCCAGTGGTAACCCAGGTGTAAAGGGTGAGGGTGGTGACAATGGCTTCCCAGGACTTCCAGGGCAGCCAGGTCCACGGGGTGTGAGCCCTTCTGAAGTCAGTGGACCTCAAGGGCCACCTGGCAATCCTGGATTTCCTGGACCTGCAGGCTGTCAAGGTTTCCCAGGACTCAAGGGTGCAAAAGGAAACCCAGGACGCCAAGGCTTGGGTAGAAAGGGTTCTTCTGGACTACCTGGAATTCCAGGACCAAAAGGACAAAGGGGACGTCCTGGAGATACTATTTCAGGACGTAACGGCCAACCAGGAAGGCCAGGAATAAAAGGGGAGAAGGGATTCCCTGGATTGGTGGGATTCCCTGGATCACCTGGACGTTTTGGAGTCAATGGACAGCCAGGGGGTAAAGGTCAACCTGGAATCCCAGGATTGGATGGCATACCTGGTGTAAATGGCCTTCCTGGTTTTAAAGGGGATCGTGGAGAGCAAGGCCCAATAGGACCTCCCTCTACACCCCTTCCACTGCGTCAGGAGAAAGGGGACCGGGGTACTCCTGGAGCTACTGGACTGCCTGGTTTTCCAGGACCACGAGGTGATAAGGGAACCCCAGGTTTTCCTGGTCGTCCAGGCTTTCCTGGTCAGCAAGCATTTGTTGATGGAGCTAAGGGTCTACCTGGTGATCCAGGTCTCCAAGGGCGCACAGGTTCTTCAGGATTTGCAGGACCTAAAGGGGCACCTGGTGTTTCTGGTTTCCCTGGCATGACTGGACCTAGGGGTGCTGATGGAGTTCCTGGTTTGTTTGGATCACCTGGTACTTCAGGATTGCCTGGTAGCAAAGGTGTCAAAGGAGACTCTACTGGAGCACCTGGGACCCCTGGAAGAAGGGGACTGGTGGGAGATTTTGGATACCCTGGTATCCCAGGCCGTCCTGGTGATCAAGGTTCTCAGGGTTTGCCAGGAGGGTTTGGATATCCTGGGGAGAAAGGTCTACCTGGAAATCCAGGAAGGCCTGGACAAGAAGGTCTGCCTGGGCCCCATGGCACTAGGGGTCTCCCTGGTTTTCAAGGACAGAGGGGACGGGATGGTGAACCAGGTTTCCCTGGGGCTCCAGGTCGTGCAGGAGTAAAAGGTTTATTAGGATCCCCTGGTTTAGATGGACTCAATGGACTTTCAGGGCCCAAAGGTCAACCGGGAGTACCTGGTGTAGTAGAGGGCGGTCAGCCTGGAGCCCCGGGATTGAATGGACTAAAGGGAGAAAGAGGCTCATCACTGCCCGGAGTACCAGGATTTCCTGGAGTAAAGGGAGCCAAAGGAAATATTGGTTACCCTGGACAGCCAGGGTTCCCAGGTCCTCCAGGTCCTCGTGGGGGACCATCCATTTCTCCTAACATTCGTGGTCCTCCAGGAGATGCTGGTTTACCTGGACTTGATGGTGAAAGAGGTATTCCTGGCCCCACTGGTCCTCCTGGTCCAGCTGGGCCTGGAACAGACCAGGGTGACAGAGGAGATCCTGGATTTCCTGGATTACCTGGAATCCCTGGGAAACGTGGTGAACCTGGATTTGCAGGAGGACGTGGGCCACCTGGCAACCCAGCATTCAAAGGACTGAGAGGAGACCCTGGAGTTAGTGGACTAACAGGACGCCCAGGCTCCCCTGGAGATCCGGGAAGTTATGGTAGCAAAGGAGCAAAAGGATTTATGGGTACACCTGGTAGCAAAGGCCTTCCAGGAATTGTTGTCCCACCCCAAATACAGGACTTGCCAACTGGGAATCCTGGTCCACAAGGTGCCCCTGGCATTGCCGGTTATACAGGATCACCAGGCCAGCCTGGTTTCCCTGGACGTCCAGGTCCTAAAGGAAAGATTGGACCAATAGGCAAACCTGGTCGCACCGGTCCAGCTGGACCTTCAGGACCCATTGGAGACCCTGGAGCTCCAGGATATCAAGGATCTGCCGGTTACAAAGGTTTTCCTGGTAGGCAGGGACCACCAGGTCCTCCAGGTTTGCCTGGACGTGCCATTGGGATCGGCTACACTCTGGTGAAGCACAGCCAGTCCAGCCAGGTGCCGATGTGCCCTCAGGGCATGGACAAGTTGTGGGATGGCTACAGCTTGCTTTATGTAGAAGGACAGGAGAAGGCACATAACCAAGACCTGGGATTGGCTGGCTCCTGTCTACCTCGTTTCAGCACTATTCCCTTCCTTTACTGCACAACCAATGAGCTCTGTTATTACGCCAGCCGCAATGACAAGTCCTACTGGCTGTCCACAACAGCACCCATTCCCATGATGCCTGTGGCCAATGAGCAGATTACTCAGTACATCAGCCgttgttcagtgtgtgaagCCCCATCTCAAGCTGTGGCTGTCCACAGCCAAGACATCACTATTCCCCCCTGTCCACAGGGGTGGAGGAGCCTGTGGATTGGTTACTCCTTCCTTATGCACACAGCTGCGGGGGCTGAGGGAGGTGGCCAGTCCCTGGTTTCTCCTGGCTCATGTTTAGAAGACTTCCGTGCAACACCTTTTATTGAATGCAACGGGGCTCGGGGCACCTGTTTCTTCTTCAACAACAAACATAGCTTCTGGCTAACCACTGTGCAACAGCAGAGGCAGTTTACACAAAGTCCTAATTCAGAGACCCTGAAGGGAGATCAGTACCGTAGCCGCATCAGCCGCTGCCAGGTCTGCATGAAGATCTTGTAGCCTGTGCACACTcaaggagaggagaggggacagagagaacagaactTTAAACAGAAAGAATAGAGAACAAGAAATGAGAAAGCAAatattgactgactgactgactgactgactgtatGAGACCCTCTCTTCTTGGTGCTTTTTGTAGCCTTCTCCAAGGCCAGGTTTAAAAGGGGCAAACAGCTCCAAGTAAAgaggttttatttttgctttttttatttcacttatcaACATTGGTGCTACAAGAAactgcattgttttatttttattttaactagtCATTGTTTGTCTTACATATTCATGGCTACCTCGGAGAGTGTGTCCCAAATCCCCGGGAAGCACTGAAACATTAATGTGAGACCACAGGCATTTTGTAACACACGCCAAAATCTTCTGGTTCACCTAGTCCAAAGTGCGCTAGTCTGAATCAATGATCACATGTTTTgggggttggttccctgacaTATGGCACAAACTATAATATCTTGCTTGCTTGATTGAGGAAAGTGGGCAAATGGGCAAACCAGCACAAATGAAGAAGATTGTGGCTTATGGTTAACACTTGAAATTACAATCCTCTCTAACCCCCCACACATGTACCCTTAAAGTATTGCACTGAAATgaatatctggaaaaaaaataatatgagtATTAGCAACTGTAGAAAATTAACATTCCACTTTTACCAGGTGCCTTGCCAAATATCTCGAATAACTCTAAAAAACAGTGTCATGATCTGATTAATAGACTTCACTCTCTACATACATATGAACtgtatcattttcatactcataaTTTCACCTGTACTACAATGTTGCCTACAAGGAGCCATTCAGCTGAGCAGAACATCTGTGCATTAGATATTCCACACTCAAATGTATACCTACAATTGCAGGAAATGTCTGTAATCACTGCTGTTATTTTTTAGTCTTTCTACAGTGTGTTTGTAAAGTCTCTTAAAGAGACAGGCTAATATGTAACCACTATATTCGTTAGCTTCTTAAGCTCTCTTTGGTAGCCTTGAGTTTTCAGTATGGTTTcatctgtaatgtgtgtataccGTTAAATTGCAGGTTCATCCAATGGTATAAAAGAAACAATGTAGTAAATCACAAAACTTGGATGTATGATTTGTACATTAAGGATGGTTTATTAAGGCATATATAtctttatgtgtatattataacagtatttgtatttttcttacacTGATTTACATgtaattacataaatacattttctccTACGTAAATTTAGGTCTATCACATAGCTGGATTTCCAGTATTAGTTTTGGTgcagagttttgtttttttttaaccaaagctGTTTCAATAAACAGAGAGTATAATTGTGCTCCCTAATTAATAAAGTGTTGAAACTAAATGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75843 lncRNA upstream 38429 13755544 ~ 13759751 (+) True G64025
TU75783 lncRNA upstream 50108 13695649 ~ 13748072 (+) False G63973
TU75785 lncRNA upstream 50108 13695649 ~ 13748072 (+) True G63973
TU75791 lncRNA upstream 225347 13570002 ~ 13572833 (+) True G63976
TU75739 lncRNA upstream 293461 13504460 ~ 13504719 (+) True G63936
TU75876 lncRNA downstream 22767 13903441 ~ 13909459 (+) True G64049
TU75933 lncRNA downstream 131424 14012098 ~ 14012315 (+) True G64102
TU75934 lncRNA downstream 132545 14013219 ~ 14013418 (+) True G64103
TU75936 lncRNA downstream 136612 14017286 ~ 14017669 (+) True G64105
TU75926 lncRNA downstream 161294 14041968 ~ 14042414 (+) True G64095
XM_026936675.2 mRNA upstream 59270 13724314 ~ 13738910 (+) True LOC113540276
XM_034303628.1 mRNA upstream 78726 13705417 ~ 13719454 (+) True gc2
XM_034303627.1 mRNA upstream 78726 13705576 ~ 13719454 (+) False gc2
XM_034303629.1 mRNA upstream 78726 13705576 ~ 13719454 (+) False gc2
XM_026936929.2 mRNA upstream 80285 13705576 ~ 13717895 (+) False gc2
XM_026935907.2 mRNA downstream 1638 13882312 ~ 13889584 (+) True ankrd46b
XM_026935809.2 mRNA downstream 10439 13891113 ~ 13898505 (+) True LOC113539767
XM_034303361.1 mRNA downstream 93322 13973996 ~ 14016125 (+) False m1ap
XM_034303356.1 mRNA downstream 111253 13991927 ~ 14016125 (+) False m1ap
XM_034303360.1 mRNA downstream 111908 13992582 ~ 14016125 (+) False m1ap
XR_004577999.1 other upstream 78726 13705576 ~ 13719454 (+) False gc2
XR_003404009.2 other upstream 235914 13558623 ~ 13562266 (+) True cited1
TU75730 other upstream 323143 13470769 ~ 13475037 (+) False LOC113539889
TU75687 other upstream 379484 13418377 ~ 13418696 (+) True G63903
TU74787 other upstream 1503057 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_004578085.1 other downstream 375070 14255744 ~ 14269340 (+) False brms1
XR_004578093.1 other downstream 751356 14632030 ~ 14658936 (+) False zgc:194930
XR_003403994.2 other downstream 2142521 16023195 ~ 16039984 (+) False LOC113540079
XR_004578074.1 other downstream 2429539 16310213 ~ 16319166 (+) False LOC113539780
XR_003404046.2 other downstream 2487282 16367956 ~ 16370684 (+) False LOC113540582