RNA id: XM_026936442.2


Basic Information

Item Value
RNA id XM_026936442.2
length 3460
RNA type mRNA
GC content 0.46
exon number 13
gene id hspa12b
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 14064494 ~ 14080036 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaatgtatgtgtatgtgtggctCCCTCTCTATCACCCTTTCCTCTCTGACATTCCAGTGCAGTTGAGGAATTGAGTGCCTGGATACAGACACAGGAGGGAACACATGGCGAGGGAGTGAAAGGGAATTCTCTACTCTGGACTATATACTGCGAAGTGTATGGATTTTTCCCTCCAATTCAAACTTTGAATACACtctatttgtaattttattttatctgattTCTTGACATCTCCAGTCGGACTTTTCATCATTCTAGAGCCTCAGAAACATCACAAAGTATTTTCTGTGgctctggctttttttttttcatttaaacatttcaagtGATTGGTCACAAAGACCAGAGAATTGGTCCATCAACGCAGGGGCTGTGATAGCCCTGTCTCCTCCATGATGGCAGAACTCCTGCAGCCCAGCCCTAAAAGTCTCCTGGTCCCAGGTGAGGACAGATCCAGGTCTATATCTCCAAGCAGCTCTCcttctccttccagaaatgacTGCAGTATTGCTCCTCTCACTCCCTCGCCCTCTCCGAGGACTGAGCTGAGGCCACATGTAGCACGTCCGTTTTCTGTAGTGGTGGCTATTGATTTTGGCACCACCTCCAGTGGCTATGCCTTCAGTTTCACAGAGGACCCAGAGGTCATCCATATGATGAGGCGATGGGAGGGTGGGGATCCAGGTGTGGCCAATCAGAAGAGCCCGACCTGCTTGCTGCTGACCCCTGAACTGCGCTTCCACAGTTTTGGCTTTGCAGCACGAGACAGCTACCATGACTTGGATCCTGAAGAAGCTAAACATTGGCTCTACTTCGACAAATTCAAGATGAAGATTCATAGCACTAGTGACCTCACCATGGTGACAGAGCTGGAGTCGGTGAATGGAAGGAGAGTTCCAGCCATTGAGGTTTTTGCACATGCTTTAAGATTCTTCCGGGGGCATGTTTTAAAGgaggtgaAGGACCAGTGTTCGTCTGTCCTGGAACGTGATGAAGTGCGATGGGTCATCACTGTTCCTGCTGTGTGGAAACAACCAGCCAAGCAGTTCATGAGAGAGGCTGCTTACCTGGCAGGTCTTGTGCCTAGAGACTCTGCTGAGCAGCTACTTATTGCTCTTGAACCTGAAGCTGCTTCAATCTATTGTAGAAAGCTCCGTCTCCACCAGGTCATTGACCTGAGCCAGAGGCCAATGACCAACGGCCTGGACCTGGAAGGGTCCCGCCCCTTTGACTCCAGTTTCAGGCAAGCACGTGAACAGCTTCGCAGGGCCAGACACAGCCGAACATTCCTCGTGGAGAGTGGAACTGGGGAACTGTGGTCTGAGATGCAGACGGGTGATAAGTACATAGTGGCAGACTGTGGAGGTGGGACTGTGGATCTGACAGTACATCAGATTGAACAGCCTCAGGGAACACTGAAGGAGCTGTACAAAGCATCAGGAGGTCCGTATGGTGCGGTGGGTGTAGACCTGGCGTTTGAGGCCATGCTGTGTCAGATATTTGGGACAGACTTCATTGAAACATTTAAAGCCAAGCGTCCGGCTGCCTGGGTGGATCTGACCATCGCCTTCGAGGCCCGCAAACGCACAGCAGCCCCCAGCAGAACGAGTGCACTCAACATCTCACTGCCCTTTTCCTTCATCGACTTCTACAAGAGACACTGTGGCCAGAGTGTGGAGACAGCACTACGTAAGAGCAATATGAATATAGTAAAATGGTCTTCTCAAGGGATGCTAAGGCTCACGGCAGAGGCTACAAATGAGCTTTTCCAACCTACCATCAGCAAGATCATCAAACACATTGAGGACCTGATGGAGAAGGAGGAAGTAAAGAATGTGCGCTTCCTGTTTTTAGTGGGTGGTTTTGCTGAGTCTCCTATGCTCCAGCGTGCAGTCCAGAATGCACTGGGGCAGCGCTGCCGCATCATCATCCCCCAGGATGTGGGTCTTACCATTCTGAAGGGGGCAGTGCTGTTTGGCTTAGACCCCACAGTGGTGCGAGTCCGCCGCTGCCCATTAACGTACGGCGTTGGTGTCCTAAATCGCTTTGTTGAGGGTCGTCATCCACGTGAGAAACTTCTCATCAAAGATGGCCGGCAGTGGTGCACAGACATCCTTGATCGCTTCGTTTGCACTGACCAGTCGGTGGCCTTGGGGGAGGTGGTTAGGCGGAGCTACACCCCAGCCAGAGTGGGCCAAAGGaagattataataaatatttactgcTGCACCAGTGATGATGTGGTGTACATTACAGATGCTGGAGTTAGGAAGTGTGGCACCATCACTCTGGATCTGCCTGAGTCAGAGGCAGGCGCCATCAGCAACAGCACGAATGGAGCAGCGCTTGAGCGCCGGGAGATACGAGCCACCATGCAGTTTGGAGACACCGAAATTAAAGTGACTGCTATTGACATGGCCACAGGGAGACAAGTCAGGGCTTCTATTGACTTCCTGTCTAACTAACTGAATTACCCACACattgaggaaaagaaaataggTATATGAACAATTCAAAAGACTAATTCAGAATCCATCCATCAGGGGTCCTGAAATAGTTTGGCACATTTTCTCAGTTTATCAAGCTGTTTCCTTATAAATGACCacttaaaaactttatttttgtagactGCTACTATTGCTGAGAATTATTACTGTCCAAGTACtcgtttttttccttttattatcAAAGCTTTTATGCAGATGCAATttctttcccccttttttttttttttttaaaccaacagTGCCTCCTTGTGGCTTGGGGAGAAACTAGACATCTCAAAATGTACTGAATGAAAAGCTGGAATACTAGTTCATCATAGGGACTTTAGAGGAATCAGATACAGACATTGCAAATGTACACATATGTTCTCATATTTTCTTTAagcaatagtttttttttgctatgcaTTAACTTTGAATATGTACCCAATACATATTATGAACACAAAACCTAATCTAGTATTCATCTTTGGTAGAACCAGTTCATAGCGTTGCTATAACCACTATGTTAAAGTTCAGTACTCTGCATGCAATCAAACATTATACAAAGCAAAAATGCTGCTAAAACTTCTGAGAGCATCagcagagaaataaataaagaaataaataccaAAGACAGCAGATGAAATGTCAAAGTACGGATTTTAATGGTCCAATAAATAGTTCGACCGAATGACAACATGGGAACATCCTGCAGTCTGGCTCAACGCCCAGTATCAGTGCTTCTAcaatttcacaaaccagaaagTCCTCGTGTGTGTGATCAAACTATTACAAAACAAGCAGCCACTAATAAACAGCCAAAATCCCACTTTACTTACAAAACCAGACAATAAGCATTAGTGATGCATTTAGCAATCTGCGCTTTCTTTTGCATTCCATAGCTGGCAGCCACCACACGAAACAGCTAATAACATTGTAGGCATTAACTAACAGGTTAGTAAGTAAAATGGGA

Function

GO:

id name namespace
GO:0006950 response to stress biological_process
GO:0002040 sprouting angiogenesis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76204 lncRNA upstream 7607 14056527 ~ 14056887 (+) True G64308
TU75926 lncRNA upstream 22080 14041968 ~ 14042414 (+) True G64095
TU75936 lncRNA upstream 46825 14017286 ~ 14017669 (+) True G64105
TU75934 lncRNA upstream 51076 14013219 ~ 14013418 (+) True G64103
TU75933 lncRNA upstream 52179 14012098 ~ 14012315 (+) True G64102
TU76367 lncRNA downstream 214966 14295002 ~ 14295261 (+) True G64459
TU76370 lncRNA downstream 216234 14296270 ~ 14296472 (+) True G64462
TU76581 lncRNA downstream 600170 14680206 ~ 14680813 (+) True G64668
TU76586 lncRNA downstream 682299 14762335 ~ 14762596 (+) True G64673
XR_004578083.1 lncRNA downstream 897290 14977326 ~ 15011493 (+) True LOC117597182
XM_026936120.2 mRNA upstream 24887 14035207 ~ 14039607 (+) True nagk
XM_034303357.1 mRNA upstream 48369 13992718 ~ 14016125 (+) False m1ap
XM_026937054.2 mRNA downstream 12458 14092494 ~ 14151289 (+) True slc8a4b
XM_034303973.1 mRNA downstream 149937 14229973 ~ 14253890 (+) True ppp1r14bb
XM_026936979.2 mRNA downstream 149946 14229982 ~ 14252612 (+) False ppp1r14bb
XM_026937055.2 mRNA downstream 175708 14255744 ~ 14269340 (+) True brms1
XM_034304046.1 mRNA downstream 175708 14255744 ~ 14269340 (+) False brms1
XR_004577999.1 other upstream 345040 13705576 ~ 13719454 (+) False gc2
XR_003404009.2 other upstream 502228 13558623 ~ 13562266 (+) True cited1
TU75730 other upstream 589457 13470769 ~ 13475037 (+) False LOC113539889
TU75687 other upstream 645798 13418377 ~ 13418696 (+) True G63903
TU74787 other upstream 1769371 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_004578085.1 other downstream 175708 14255744 ~ 14269340 (+) False brms1
XR_004578093.1 other downstream 551994 14632030 ~ 14658936 (+) False zgc:194930
XR_003403994.2 other downstream 1943159 16023195 ~ 16039984 (+) False LOC113540079
XR_004578074.1 other downstream 2230177 16310213 ~ 16319166 (+) False LOC113539780
XR_003404046.2 other downstream 2287920 16367956 ~ 16370684 (+) False LOC113540582

Expression Profile