RNA id: XM_034303667.1


Basic Information

Item Value
RNA id XM_034303667.1
length 3931
RNA type mRNA
GC content 0.41
exon number 6
gene id zgc:55943
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27468048 ~ 27477673 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gttgtgtttttgctcGGTGCTGTTGCCTCCCGCCGCCTCTCttacacaacatgctgaaatgctcctgtgtgtgtgatgttccgCCTTTACTGTGCTCTCTTTCTCCACAGGATGGATGTGGATGAGGATTCTCACTTGCTTTTCACTCATTTAAGCTCagggttgtgtgtgttgtgtgtgttgtgtgtagttcatgttACACGCTAGGCCGTTAATTACCATTAGCTAATGCAAAcacaacaacatcaacagcGGCGCGTGACTcgttttattttagctttagaTTATAACAGGAATAATTGAGACTTCatggaaatatttatatttgtacattGAACCTCGAAGCCTCCTTACAGCCGCCGCTGGTGTGTGGAAATGTCTTACATGTGGCTCagatgagaaatgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagattggtgCTACTTGATCTTCTTCCCTCTTCAGTTTGGGCTTCACTCCAAATCTCTCCCTGCACCCTTTGGACTGAAGTGAACACCGTGTGACGTCATGACGTTTTACGCACTACCTAGTGTACTGTATGATTAATAGACAGCGGTTtgggacaaacacacacacacacacacacacacgcagagccACACAGCAAGTAATCTACTGTCATCTACTGTCAAAACCTTCAGCTGTAAGAAGTGTGGAGGACTGTACCATGTtggagagagaggggggtgtgagtgagtgatgggCTGCGCTTCGGCCAAGCAGTTGTCGTCCGTTCCAGGAGATGAGGAGGATCGGGACAAAGCCCACAGCAATGGAGACGCCTTCTCTTCAGACGAGTACAAAATGAAAGGAGTGGAGAAGGTGAAGTACATGCACGGAGAGGAGGAGCGGATGAACACGCGCAACCAGGAGCAcctggaGAAGAGCACATTTTTGCACAAGGGCAAACATAAAGAGGCCAGCGGCAACACTAATAAAATAAGCATCCACTCATCAGAGAGCCAGCAGGAGTTCTTCaggatgttggacgagaagatCGAAAAGGGACGTGACTACTGTTCGGAGGAGGAGGACGTGACATAACCTGACACTGTTTTACCTCTACTCCTCCTCGAGATGATCACTCCTTCCCTCGTCTCCTTTTCCCCTACTCTGAGCGCTGAGCGAGTTTACCCCCACCACCATCGAGCCCTCCTGTTTACATTCAGCGATCAGCGCTCCGCTCCGACCGCGGAAAGACGTCTGGAGGGGAGGAGAAAAGGGGACGTGGGACAGACGTCTGGCATCTTCGTTGATACAGTGCCCTTGCCTTACACTAAGCCTTTCTCTTGTGTTTCTCAACATTTTTGAGAAAGAGCCATGAACATAACACTGtcctggacttttttttttgtttaaaaaaaggatgtgTCACGTCCTCTCGGTGGCTTTACATCTCTTGCACGTGCAGAATGAAACATTTGTTGGACattttgcttcttctttttgttcttcttcctTGGAGACGAGACGTCCCGTGAAGTTGCAGATCATCATGTcgaaagaaacaaaacaaaggacAAATTTAATTCCATCCCACACATTCCaggcattttatatatatatatacgtatgtgtgtgttggaaaagTATTTTTCTCACCATTAAGTCTGTaagtgttatgttttttgtttttctattttttttttaaaactcttcaGACATTTTTAGAGTGTAACCTCACTCAGGACTGTGAGTGTCAGAGGAGGATGTTTCATTGTTCATTGCGTTTCAAACATCGTACAGCAATCGCACACTTTCGACAttgcaatattttaaacacaacatggttgaaggctgctttcacaccagctgttttttccccctgtaaAATTCACTAACTGGAGCACCTTTTGTGCCAATGTGGGGGGAACAAAattgtaaccatagcaacacaCTTCCCAGTCCCAGCTAGTATCggctaactagcctagcttgcgCTCTAGATTATCACGTTGCATTGCAACATTTGAAAATTTTCCATTCAACATGTCGTAAATCTCCACcgccatgttttgtttttctcgcTATCCCCCTAACTTGCGACCTGATTGGTCGGgaggttaaaaaagaaaaatgtgtaatacaTATACTGGAATAAACActaagtgtgaaagcagcctaacAGACTCGAGTTGCTTGACGGCGGTTTCGTGTTTGTAGCTCGCCACGATCAgcaggcatgtgctgataaatCATAATCACGTCTACAACAGtataaaaatggcataaaataaaacaaaggatGATATGGTTTTCTGTGCATCATAGCAGAAAAGCGCTCAGTTCCAACCCTGTCCCAAAACCCCccaacaaataataataaaactttttataataaatgaataaacccGTCTTTTCTCTCAGTGAACTGTAGCTAGCTTTACACACAATCTGCACAAACAAGCATAATATTTCCTAACGTtactaagctagctaatgttgtTATAGTATTTTcctaaatgttagctagctagcattattgTGGAATGCTAACTTTTGCTACTTTAATTTAAACTGGGTAGCTTCTCTGCCTTTGTTTGAGGGTATTTGCTAACATTGGCTAGAATTTTCTCTCGTTAGCTACCCGACTTTGGCAACATCCTGTAGGATTAGCTAAACAGCTTTGTTGTGGGATTATTAAATGTAAGCTAGTTGTTTGTTTGGGAATATTCTCTAGTACTAGCTTTTgctagatttttgttttttaagacaTGTTCTCAAACCACCTTTGGGTGGCTAGCTTTATTTGACTATTATCAAACATTAGCTAGACAAAAGCTTAGTTAGTGTTTCACATAGCTaaagaacaaaataattaatatacagaAACCAAATGTCcaagttttttttctggccATGGATGATAAAGTCAGACGTGGACACCATAAAATGACAAAACGAGCTATTCACAAACTAGCTAGTTTTGTTTAGTCATATGttctaatgctagctagcttactagATTTTTTGAGTCATGTTTTCGCATTTTCTTTAGTGATATCCTTTAAAATGGGCTAAATACCTTTGCTGtgggatattattattaaatgtaatatagctttgtgtatattttttaatgttagctaagctagcttTGTTTGTCCATACtctctaatgttagctaagctagcttTGTTTGGCCATATTCTCTAATATCAGCTAGACATGAGTTTATTAAAGgtttcacatattttaaagataaaataattgacacacacaaaccaaaagTCAAGAAATGACAGAATCTTACGCTAACATTACATCACATCGGTCAGAGTTAAAGGCAGCTGCATAGTTCTAGTGATGATTGATAAAAGTATAGTAGTGGTCTTAATGGTAATATGAAACCGTTAGGCAGTTATCGCGTGGTGTAACTTTAATATCGGCACATGCCTCTGAGTGCGAGAACGAGTGAGAACATGGCTAGCTTCCTCACTGTGTCTCCTTCTGGATGAAATACATCTTACAGAGCTTTAAAAGTATTTCTACTAAAGACAGTAAACACTAAAGACGGTAAACACTCGTGTTTCTCTCAGTTTTACAGGAAGCTCGCTCGAGCCTGACTGATTACACagaaccaacacacacaccccccgtGTACAGCTGATTGATTACAGAAGTCCTAAATTTCAGAGAAACTAAAGCTACATCACACGTTTTGATTTACATGCTGAACGTTTCGTTACTTACCCGTGTGAGACCCCAGCGCTAATTTCAGCCCTGTGTGTTAGGAAACAGAAACATCAATCAGACTCGAGCAAGAAAAACATAACAACTGCACAAATATGTCTgcatttcctttttgttttttatcctTAAATAACTCATACCATATGTACGAAGTGCCCAAACTTTGTGCCAAAAATTATTCCACAATGAAGAAATCATGAGTAACGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85362 lncRNA upstream 8086 27459670 ~ 27460197 (+) True G72012
TU85353 lncRNA upstream 39061 27428419 ~ 27429222 (+) True G72005
TU85334 lncRNA upstream 61885 27405579 ~ 27406398 (+) False sgip1b
TU85328 lncRNA upstream 87211 27380848 ~ 27381072 (+) True G71980
TU85325 lncRNA upstream 96605 27371473 ~ 27371678 (+) True G71977
XR_003404004.2 lncRNA downstream 6147 27483820 ~ 27487711 (+) True LOC113540179
XR_003404003.2 lncRNA downstream 6158 27483831 ~ 27487711 (+) False LOC113540179
TU85494 lncRNA downstream 75454 27553127 ~ 27555706 (+) True G72118
XR_003404048.2 lncRNA downstream 78412 27556085 ~ 27559110 (+) False LOC113540592
TU85491 lncRNA downstream 78531 27556204 ~ 27559102 (+) False LOC113540592
XM_026937314.2 mRNA upstream 1778 27460268 ~ 27466505 (+) True imp3
XM_026936528.2 mRNA upstream 21035 27441509 ~ 27447248 (+) True fam78ba
XM_026935918.2 mRNA upstream 41589 27421285 ~ 27426694 (+) True bcl6ab
XM_026937130.2 mRNA upstream 55503 27410223 ~ 27412780 (+) True tctex1d1
XM_026935916.2 mRNA upstream 62473 27387208 ~ 27405810 (+) False sgip1b
XM_026935807.2 mRNA downstream 18175 27495848 ~ 27508199 (+) True abi1b
XM_026935808.2 mRNA downstream 18175 27495848 ~ 27508199 (+) False abi1b
XM_026936183.2 mRNA downstream 32177 27509850 ~ 27517204 (+) True si:ch211-252f13.5
XM_034303993.1 mRNA downstream 57003 27534676 ~ 27546129 (+) True ap2m1a
XM_034304070.1 mRNA downstream 84476 27562149 ~ 27582022 (+) True dvl3a
XR_003404108.2 other upstream 355029 27113148 ~ 27113254 (+) True LOC113540738
XR_003404105.1 other upstream 804201 26663971 ~ 26664082 (+) True LOC113540735
TU84616 other upstream 1092504 26353189 ~ 26375779 (+) True LOC117597079
TU84618 other upstream 1104050 26353189 ~ 26364233 (+) False LOC117597079
XR_003404060.2 other upstream 1175499 26288294 ~ 26292784 (+) False zgc:66427
trnat-ugu_5 other downstream 11580 27489253 ~ 27489325 (+) True trnat-ugu_5
XR_003404069.1 other downstream 78844 27556517 ~ 27556648 (+) True LOC113540695
XR_003404070.2 other downstream 80092 27557765 ~ 27557902 (+) True LOC113540696
trnat-ugu_6 other downstream 142932 27620605 ~ 27620677 (+) True trnat-ugu_6
trnat-ugu_8 other downstream 143638 27621311 ~ 27621383 (+) True trnat-ugu_8

Expression Profile