RNA id: XM_026936479.2


Basic Information

Item Value
RNA id XM_026936479.2
length 1497
RNA type mRNA
GC content 0.41
exon number 7
gene id hacd4
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20159312 ~ 20166249 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGATGTGTGTCTTTCAGCTCAAGCACCATGCGTGTCTTTGAGATCAAACCTCATGCGTCTCTTTGAGATCAAGCCTAATGCGTTCTTTAAGATCATGCTCCATGCGTGTCTTTGAGATCAAACCCAGTCAGAAAGATGAGGGAAAGGCAAAAGGGAAAGGCAAAGGGAAGCCCACCGCAGGTCCTGCCCTGCTTACGTCACTGAGGAAACGGGGAAGCCGACGACTGAAGGCGCGATGAACAAGAAAAGCAACAAGCAGCAAAAAAGTGAGCGAGAAGCAGCACAGGAAATGAGGTGCAGCATTGGCTTCGGCTATCTGTTCTCCTACTATTTACTCCAGTTCTGTGGACACACATGGATCTTTTCCAACATGACCGCCAGATTTCTCTCGTTTGGATTGGATGCTTTAGCtggcacattttattttgtgggAGTGATGATGAGCATGTGCCAGCTTTTGTCAGTGCTGGAGCTTTTCCACATTGCAGATGGAATAGAAGAGAGTCAACTCCTTCCTCGGCTTGTCCAGGTGATTGAGAGAAATTTCCTTCTATTCCTAATCATCAGTCAAGAGGAGTTTCAAAGTAaaacagtagtgtgtgtgctgttttatcTGTGGAATATCTTACACCTCATAAGGTACCCATATGAACTGATGTGTCTCATTACCACACCATCATTCAATATGCTGTGGGCGCGCTACACCATCGCCATCCCAGTCTACATACTGTCTGTGATCACAGAAGGAATCAGTATTTTACAGGCGTTGCCATATTACGAGTCACAAGGCACATATTCTGTCCAGCTGAAAACACCTGTCTCTATCTATGTACATTTCCCATACCTGCTAATGGCCTACCTCCCTCTGTTGGCAGCAGGTTCTGGCTTTACAGTACGAATCTTACTCAAAGAAAGGAGTCAGTCTCTTGACAGCTGGAATAAGAAGATGAAAAGGGGCTAAATGAAGAAGAAATTTATGCCACTTCTACATGATTACCGCACAAAATAATGTATGCACAAACTAATAACTTTGTTGAAGTTAGAAGGACATGATTCCAAAATATCCATCATCATTTACTTACTTTTGGCAATTAAGACTGAAAGGATATGGCATACCTAGTATGTAACATACACTGTGGCGCTTGAAATGCAAAGGAATTGATAAGAATAAATTCAAAAACTGAATAATGCATAATACTATTTTCATAGTAACAGTCTAAATGATGTCAGCTTGGCACTGGTCTATTATGGTAATACATTCAGAGTAACAGAGTCTTGCCAAACACATGCTAATATTTTGCAGGTCCATTTGAAACTTGTAAGTGCTTTGCTATATTACTGTATGGAACATTACTGTTTCAGGTTTTAATCTTGATCATTGCTCTAAAgtgaacaatttttgtttttactttacagtttttaaatccATCATTGGCAGACATGTAGACAAGGACTCTGTGTGATGAATGTACTCATAAAATCTATGACATGCATACA

Function

GO: NA

KEGG:

id description
K10703 HACD, PHS1, PAS2; very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80206 lncRNA upstream 92155 20066030 ~ 20067165 (+) False dock11
TU80207 lncRNA upstream 92282 20066030 ~ 20067038 (+) False dock11
TU80167 lncRNA upstream 193432 19962599 ~ 19965888 (+) True G67642
TU80168 lncRNA upstream 194234 19962599 ~ 19965086 (+) False G67642
TU80111 lncRNA upstream 242151 19916600 ~ 19917169 (+) True G67595
TU80393 lncRNA downstream 83809 20250058 ~ 20275675 (+) True G67827
TU80554 lncRNA downstream 314351 20480600 ~ 20481755 (+) True G67958
TU80678 lncRNA downstream 469099 20635348 ~ 20635565 (+) True G68054
TU80695 lncRNA downstream 526014 20692263 ~ 20693053 (+) False G68070
TU80696 lncRNA downstream 526014 20692263 ~ 20693111 (+) True G68070
XM_026935939.2 mRNA upstream 4543 20147824 ~ 20154777 (+) True fcer1g
XM_026937098.2 mRNA upstream 29856 20102481 ~ 20129464 (+) True kirrel1a
XM_026937099.2 mRNA upstream 29856 20102482 ~ 20129464 (+) False kirrel1a
XM_026935895.2 mRNA upstream 60243 20091887 ~ 20099077 (+) True LOC113539830
XM_026936960.2 mRNA upstream 72015 20081770 ~ 20087305 (+) True LOC113540456
XM_034303346.1 mRNA downstream 55639 20221888 ~ 20271231 (+) True mllt3
XM_026935811.2 mRNA downstream 61682 20227931 ~ 20271231 (+) False mllt3
XM_026935810.2 mRNA downstream 61683 20227932 ~ 20271231 (+) False mllt3
XM_026936145.2 mRNA downstream 123548 20289797 ~ 20297146 (+) True c4h4orf54
XM_026936923.2 mRNA downstream 140881 20307130 ~ 20314066 (+) True trmt10a
TU80337 other upstream 4549 20147795 ~ 20154771 (+) False fcer1g
trnar-ucu_2 other upstream 58222 20101025 ~ 20101098 (+) True trnar-ucu_2
trnah-gug_5 other upstream 330430 19828819 ~ 19828890 (+) True trnah-gug_5
trnah-gug_4 other upstream 330938 19828311 ~ 19828382 (+) True trnah-gug_4
TU79253 other upstream 1300668 18856456 ~ 18858652 (+) True G66864
trnaa-cgc other downstream 186165 20352414 ~ 20352485 (+) True trnaa-cgc
TU80896 other downstream 854009 21020258 ~ 21033753 (+) True G68232
XR_003404073.2 other downstream 1161097 21327346 ~ 21327420 (+) True LOC113540699
XR_004577949.1 other downstream 1462827 21629076 ~ 21639890 (+) True mettl4
XR_004577950.1 other downstream 1462827 21629076 ~ 21639890 (+) False mettl4

Expression Profile