RNA id: XM_026936488.2


Basic Information

Item Value
RNA id XM_026936488.2
length 3015
RNA type mRNA
GC content 0.47
exon number 16
gene id miga1
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29172756 ~ 29184256 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCATATTAAGTGTCGAGGGCACTACTGAGCACTACTATAAACCCGtagcctgtgtagtgcacttgtgtAGGGTTTAGGGAGTTATTTGGGATTTTGCCATCTCCTGCTGTCTTTCCCGAGTGGACAGATAGCTCAAAGACGACTGAAGCACTAAATGCCGAGCCGGAGCCGAGGGATGTTGACGATGGTGTGAATATGGCACCATGGCAGAGGACGTGCTCAGAGACTCCTCACTGTCCTTAAAGACGGCCGTCCTGCGTGCGGCGGACGTTCCTCTGTCCGTCTTTTCCTCCCTTCCACAGgTGAGCCTGAGCTCTGGCACTAAGAAGCTCGTGGCCGTTGCTGCCTTCGGCGCCGTCTCCGTCCTCTTCCTCGCCCGTCGCTTCAGGAGGCGGAAGGGGAAGAAAAAAGTGGTGCAGGAGCAGAAGAGGTCTGACTTCCTCTCCACGCTTCCACCACTGAAagATGCTGCTTGCACCCGTCCGAACCTCAGTTTGTGTCTGAACTCGAAGAGCGGCTTTTCCCGTCACACTGTGTCTAACGGTGGCTTACACAGCAAACTCTCCAGCTCCCTGCAGAGTCTGAACTCGGTGAAGAGTGTGAACTCTTGCAGCGAGGGCACCAACGGATCGGCTTGCTGGGACGGAACGGACGATGGCGATCTGCGTAACGTCGTCACGACTCCAGAAAACCTCTACCTGATGGGTATGGAGTTGTTTGAGGAGGCGCTACGACGCTGGGAAGAGGCGCTAAGTTTCCGCAGCCGGCTAGCTGACGACGAGGCAGAGTGCTGTTCTGTAAAACTGGGAGCCGGAGACGCCATCGCCGAGGAGACCGTAGAGGACATCATCAGCGGCGAGTTCATCCGTAAGCTGGAGTCTCTGCTGCAGAGGGCATATCGGCTCCAGGAGGAGTTCGAAGGAGCGGTGGGATTCACGGATCCGTCTTCACACCACAGCGAGAAACACCCCGAAGGTTCCGCGAGAGACGATCTGGATGACTCGTGCTGGAGAGACACCTTGAGCATCGGCTCCACTGACTCGTTCGTGTCTGCTGCAGAGCTGTCTGAGCATAAGAGTGCCTTGGGTCTCAGCTCTCTCTGTCGTTACCCGTTCTACGAGGAGGCTCTGCAGATGGCCGAGGACGGGAAAGTATCCTGTCGAGTTCTCCGAACTGAGATGCTTGAATGCCTTGGAGACACAGATTTCCTCGCCAAGCTGCACTGCATCCGCCAGGCTTGTCAGGTCATTCTCCAAGAAATGTCGACTCAGAAGTTTCTGGCTGACACGGGCAAAAAGATCTTGTCCTCAATAATCGTGAAAGCCAGAAAGAACCCTAAGAGATTTGAGGAAGTTTACGAGGAGATGATCGGCTTCCTGGAGCAGAGGGAGCACTGGGAGAAAACCGAAGCCGAGCTCTCTACGAGAGGAGTAAGGCATTTAAACTTCTACGACATCGTCCTCGACTTTATCCTCATGGACTCTTTTGAGGATCTGGAGAATCCGCCCATGTCCATTATGAATGTCGTTAACAACCGCTGGCTTAACGATGCCTTCAAAGAAACCGCGGTGGCATCAAGCTGCTGGTCTGTTCTAAAGCAGAAGCGACAACATGTGAAGGATCAAGACGGCTTTATCGCTCACTTCTACGCGGTGTGTGAGCACATCAGCCCCGAGTTAGCGTGGGGTTTCCTGGGGCCTAAAAGCTCCCTGCATGACTTCTGCTGCTTCTTCAAGGAGCAGGTGCTGCTCTTCCTGAAGGACATCTTCGATCTGGACAAGGTGCGTTACTCCAGCGTGGACACTCTGGCCGAAGACGTACTGCACCTGTTGCACTACCGAGCCGAGTTGCTTCTGAGCTACTCAGGCTCTGACTGCACCCCCCACGCTAACGGCTGCGTCGGTACGATGTCCCGGCTGGTGCCCGGCGCCCTGCCCGAGACCCGGGTGCAGTGAGAAACTCTCCACCGATTCGGAATTTCATCCATCCTTAAACAGGAAGAACAACGTCTTTTACAATCAGTGCTTTGTTTTTGACTTTTCTATATTGATAAAGGTCAAAGTGTAGCATGTAGTCGAGTGAAACTATTATAACGTGCTGCTCTATTTGGAGTGATCACACTTGGTATTTGTATGAAGTATTTATTTcatatctgtttttattcttgAAATGAATGATCGACTGATCTCAAAATGTGAATGAGTGCTGGGAATTGGATCGAATGTCATTCAAAAAGGCCCTACCTCTGACTAGAATTGTCCAAAATTGTCCAAAATTAATACCCACTTCTTACTTTTTGATAGATGAACCAGAAATTTGGGCTTTtaagagtcttttttttttttttttttttctttttcaccaaGAGTGCATACTGTATAGCAACGGAGGAcggattattttaaatatcacaTACTGGTCATTTTGTTGTGACAATAATAAGGCTTACTGTTAGCACCTGTATTGTGTTCTCAAGTTTGAAGTAAATGTTggatgtgtttctttttttattattcaaaattttaacaaattataaGACAGATGGTTCTTTAGTCATGACTTGGCTGAGGGACTGTCATTGTGTCTAAAAGGGTGGAGCTTAAGTTAAATCAGCCATTTTCAAAATtgatcatataatataatatattataagcTAGTTAACGGTACGtgtcactagctagctagttaccaCTAGCTAACTAATAATGATTGCGTCGATACAATAAATCAGGAGTCGAGTTCACTGATGTTTGTTAAATTACCGTGGTGAAGTTATACACTCTGATTtgtgattaattaatgaaatttaaCATAAGTTCCACCCTTGTTAATACTTTAATGCCAGGATGTGAGCTAAACTGCCTGTTCAGTTGTtaagctaaatgctaaatatttattCTAAAAGAACTTGGATGTATTTTGTCTAATTACcacattatttttctgtaaaaatgtccAAAGATTGTGCTGCTACAATGTCAAATTTATGAGCTAATAAAAGGCCAATGGAAAGTG

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86462 lncRNA upstream 118538 29053486 ~ 29054218 (+) True G72917
TU86455 lncRNA upstream 238447 28933983 ~ 28934309 (+) True G72913
TU86452 lncRNA upstream 241358 28931076 ~ 28931398 (+) True G72910
TU86429 lncRNA upstream 254358 28917742 ~ 28918398 (+) True G72892
TU86423 lncRNA upstream 257498 28914783 ~ 28915258 (+) False G72889
TU86551 lncRNA downstream 114879 29299135 ~ 29301133 (+) True G73000
TU86633 lncRNA downstream 299006 29483262 ~ 29524242 (+) True G73072
TU86630 lncRNA downstream 334852 29519108 ~ 29521022 (+) True G73069
TU86649 lncRNA downstream 340042 29524298 ~ 29524836 (+) True G73088
TU86650 lncRNA downstream 341946 29526202 ~ 29526918 (+) True G73089
XM_026936490.2 mRNA upstream 44192 29080184 ~ 29128564 (+) True ak5
XM_026936505.2 mRNA upstream 129761 28954584 ~ 29042995 (+) False st6galnac5a
XM_026936485.2 mRNA downstream 1169 29185425 ~ 29196149 (+) True fubp1
XM_034303613.1 mRNA downstream 1169 29185425 ~ 29196149 (+) False fubp1
XM_026936514.2 mRNA downstream 12333 29196589 ~ 29205743 (+) True LOC113540202
XM_026936710.2 mRNA downstream 24078 29208334 ~ 29218020 (+) False LOC113540294
XM_026936711.2 mRNA downstream 27709 29211965 ~ 29218020 (+) True LOC113540294
TU86406 other upstream 260652 28874356 ~ 28912104 (+) True G72873
trnat-ugu_8 other upstream 1551373 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 1552079 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 1614854 27557765 ~ 27557902 (+) True LOC113540696
XR_003404069.1 other upstream 1616108 27556517 ~ 27556648 (+) True LOC113540695
TU86682 other downstream 435737 29619993 ~ 29623037 (+) False asip2b
TU87615 other downstream 1561875 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 1561875 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 1877474 31061730 ~ 31097888 (+) False spsb4a
TU87898 other downstream 2167005 31351261 ~ 31353144 (+) False c4h22orf39

Expression Profile