RNA id: XM_034303989.1


Basic Information

Item Value
RNA id XM_034303989.1
length 2321
RNA type mRNA
GC content 0.48
exon number 5
gene id otol1a
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28779749 ~ 28784107 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTAAAAGGTGGTGGCTGCGATGTTGTTCCCTCTCAGGTTAGGAGGACGACGGAGAAGAAGACGCCAGAAGAAGTGATCCGACAAAGATTATAAGCTGCtactcatcaccatcatcaacaaaatGACCAGTTCACTCCGCCTGGTCATCCTGGTGATGGCCTCAATGATGGTAGCAGTGGCTGAGGCATCAGCACCCAGGAATCCACAGCGACTACGGTCTAAGCCTACTAAGAAGCCCCCTCAGGGTGGGGAATCTTCTTCAGCGCTGCCTACCCGCCTGGGTGTCCGCTTCACCACCACCGTGGCTCCCATCCCTTCCACCAGTGCCTTGCCTGAGGACACCACCGAGTCCATCACGGATTCATATTCGTCTTCCACGGAGAGCAGCACCTACTCCAGCGACGCCTATTCAGCTGACTACCACACAGAGGCTATGTTGCCGCCTGGAATGGGTCCCCGGAACTACACTCTGGACTACAACGAGTGCTTCTTCAACTTCTGTGTTCTAGGGCAGAAGGGAGAGATGGGGCCTCAGGGAGCAACTGGACCAGCAGGACTTCCTGGAGCTCCTGGACTGCAGGGAGAAAAAGGAGATCCAGGACAAGCCGGAGAGAAAGGGATTCCAGGAATACCAGGTTCTCCTGGGAAACCAGGAGATAAAGGTGAACCAGGTCTTAAAGGTGACAAAGGAGATATTGGCTTGCCTGGATTGAAAGGTGAACTAGGGAGCAAAGGGGAACCTGGCCAGAATGGGAGCAAAGGAGAGAAGGGTGACATGGGCCTGCAAGGACCGATGGGACCTGCTGGGCGAGATGGCTTGAAGGGGCTAAAGGGTGATAAAGGAGAAATGGGGGAGCAAGGAACAATGGAGAAGGGGGAAAAAGGTAACAAAGGTGAACCTGGGCCTCCAGGACCTAAGGGAGACATGGGCAAGCCAGGACTGAATGGCACAGTGGGATCTCCTGGAGTAATGGGCCAAAAAGGAGATACAGGCTCTCAAGGTCCACAGGGAGAGCCAGGTAAAAGAGGACCACCTGGACCACCAGGGCAAAGAGGGATGCATGGCATGAAAGGAATGCGAGGTATGAAAGGGGTACGTGGCCAAAGGGGAATGAAGGGCTCAAAAGGAGAACCATTCATTCAGAAGCGCTCAGCCTTTAGCGTAGGACTCTTCCCTAGCAGATCTTTCCCTCCTCCTGGCCACCCGGTCAAATTTGACAAAGTCATCTACAACGAGGAAGGACACTGGGACCCCTATATCAGCAAGTTCAACTGCACTTACGGAGGTGTCTATGTGTTTTCCTACTACATCACCGTTCGCAGTCGTCCTTTGCGGGCCGCCTTGGTAGTGAATGGGGTTCGGAAACTGCGCACTCGCGACTCCCTCTATGGCCAGGACATCGACCAGGCCTCCAACATGGCACTGATCCGACTGTCCTCTGGTGACCAGGTATGGCTGGAGACACTGCGGGACTGGAATGGAATTTATTCCAGCAGTGAAGACGACAGTACCTTTTCTGGCTTCCTACTCTTCGCTGATGCCACTAAGGAATGACGACTGAGAACACCTGAGAATGGACCTTTTGCTTTACTACACATGACCAGTGCCTGTTGCATCAGAAGCCACTTATTTTACCCAAGCCTCATACTGATGCCTCATACGCTTACTAACAGCAACTGACCAGCTACTAATAACTCTGCTTTGGGCCATATCTTCTGAAATTCATATCAGAGTGCACCTTCAGGGATGGTTTTCCAGACACTGACTAATTTGTGTACtaaacagaattttcattttataggGGATATGTAGCATATGGAATGGAATTCATGCCATactgaaatgcaatcattaTGGTGGGGAAAAATGTGGAATGCAATGTGTGCATTACTTTTTAGTAGTGCCATGTGTAAAGTGGGTCAAATTGAAACGCAAAAGCTTTActaagtttttttaaacattgcttGATTTCTTCCCCCTGGAGCCACCCTGACCCTGATTGGAATAAAGTAggaactgaagatgaatgaaggaattaaTTAGATGATAAGCATGTCATTTAATTGTTTTCTGAAATAatgtgtgagtctgtgtttcATGCCAAAATTTGGGGTGTGCTTGAGAAACTTGTCAAAGGTAATTGCTTGGGATCAAGTATACTTTTTGGTGGTAAATAAACACTATTTCactttagttattattaaaGGCAAATTTTCATAAAACAGAGAAGCAAGAATTATGATGATTTTGTGTTTGATACTTGAAGGCCATCTTGTTACAAATTTGCTAACCAACTTTTCCTGGATATTTGCAGTTGAA

Function

GO:

id name namespace
GO:0048840 otolith development biological_process
GO:0005576 extracellular region cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85891 lncRNA upstream 18298 28758555 ~ 28761451 (+) False gng5
TU85849 lncRNA upstream 121213 28658276 ~ 28658536 (+) True G72428
TU85843 lncRNA upstream 128128 28651414 ~ 28651621 (+) True G72422
TU85820 lncRNA upstream 142548 28619824 ~ 28637201 (+) True G72404
TU85895 lncRNA downstream 3510 28787617 ~ 28791836 (+) True G72472
TU86346 lncRNA downstream 8740 28792847 ~ 28797137 (+) False selenot1a
TU86397 lncRNA downstream 78309 28862416 ~ 28901261 (+) True G72869
TU86402 lncRNA downstream 89496 28873603 ~ 28873988 (+) True G72872
TU86425 lncRNA downstream 130522 28914629 ~ 28915189 (+) True G72889
XM_026935934.2 mRNA upstream 18301 28758545 ~ 28761448 (+) True gng5
XM_026937211.2 mRNA upstream 34103 28739126 ~ 28745646 (+) False si:ch73-344o19.1
XM_026937212.2 mRNA upstream 34103 28739127 ~ 28745646 (+) True si:ch73-344o19.1
XM_026936340.2 mRNA upstream 56892 28716264 ~ 28722857 (+) True fzr1b
XM_026936875.2 mRNA upstream 80333 28691096 ~ 28699416 (+) True aldh9a1b
XM_026936511.2 mRNA downstream 8746 28792853 ~ 28797159 (+) True selenot1a
XM_034304057.1 mRNA downstream 29976 28814083 ~ 28823502 (+) True zgc:153615
XM_026936510.2 mRNA downstream 29976 28814083 ~ 28823502 (+) False zgc:153615
XM_026936513.2 mRNA downstream 43845 28827952 ~ 28831728 (+) True LOC113540201
XM_026936512.2 mRNA downstream 48266 28832373 ~ 28842762 (+) True txndc12
trnat-ugu_8 other upstream 1158366 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 1159072 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 1221847 27557765 ~ 27557902 (+) True LOC113540696
XR_003404069.1 other upstream 1223101 27556517 ~ 27556648 (+) True LOC113540695
trnat-ugu_5 other upstream 1290424 27489253 ~ 27489325 (+) True trnat-ugu_5
TU86406 other downstream 90249 28874356 ~ 28912104 (+) True G72873
TU86682 other downstream 835886 29619993 ~ 29623037 (+) False asip2b
TU87615 other downstream 1962024 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 1962024 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 2277623 31061730 ~ 31097888 (+) False spsb4a

Expression Profile