RNA id: XM_034303337.1



Basic Information


Item Value
RNA id XM_034303337.1
length 2970
RNA type mRNA
GC content 0.48
exon number 9
gene id st6galnac5a
representative False

Chromosome Information


Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28940674 ~ 29042995 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


AACCAGAGGCTAGAAGCTTCCATTACTTGGTAGCTAACAGTCTATGTTTAAGCAACTCTTCTCAAACCCCCAAGACCCCCGTGAGGAAGATCTCTAGAGAGCAGAAGTCGTCCAGTGGGGAGAATATTTTCTGATTACGATGAATTAATCCTATGACATCAGACATCGTCTGAGCCGTTATTCTGTCTGGGCTGGAAAGTGGAAACTGGATCTGCGGTGAAGTGGCGTTTTAATCAGGATTAACTGATCCATCACACGAACAGCACGGATGCAGACACAGGCAGTCACTCACTGATGGTTCAGACTTAAATCAACTTGCACCAAAGTTCTGTTTATTACGGAGCCCCTAAGGGGACagggtgatggaaaaaaatatgagatgggacgaaaaattatatttcaatgctttCGTGTTCGCTCGCAAATGCAAATATCTTTGCGAGAGAACGCAAAAATTTTGCGAATTACCATCTTAATGACGGACACGGATACCCTCAGATGTGCTTCTCTTAATCAAATCCACTGTAAGTGGGTGATAGCGAGCAGCCTGTTGTTGGCTGTTTCTCTGTTCGTGGTGTTGGTGAATTACTCGGAGAAGCCGTACTTCCGGCTACAGCCGATGCTGGGACAGAGTTTCAGCCCCCGATGGATGTCGTCATGGCAACACAAAGCGGTACGACCACATCTGGGGTATGTCAGTGTGCCCAAGAAGGAGccgCTGAAGCTGAGCTGTGATGTATGCAGCGTGGTGTCCAGCTCGGGGCAAGTGCTGGGTCGTGGTGCGGGCACTGAGATCGATCGAGCTGCCTGTGTTTGGCGGATGAACAACGCTCCGACCCAGAGGTACGAGAAGGATGTGGGCAGCCGCACAAACCTGCGAGTGGTCTCACACACCAGCGTGCCGCTCCTGCTGCACAAACCACAGCACTTCTTTGGTCCGGCGTCCAACGGCACCGTGTACGTGGTGTGGGGGCCGCGGCGCAACATGAGTCCAGACGGAAACGGTCTCATCTACAACATGCTGCGGCGCGCAGCCGACGACTTCCCCAGCGCTCGCATCTACGTCACCACTGACGAGCGCATGGACTACTGCGATAACGTGTTCAAGAAGGAGACGGGCcgtgacagGATTACGTCGGGTTCGTACCTGAGCACCGGATGGTTCACCCTCATCTTAGCCATGGACATGTGCAAGGAGATCCGCATGTACGGGATGATCAACAACACCTACTGCAACGCCATGGAGCAGCCGTGTTTCTGGCCATTACCATGTGCACCAGCTTGTTCTTCTTATACAACgtcaataacaacaacagcaacaacgaTGGCAGGGCTGGAAGTTCTCCTGCTGCATCCACCCAGAAACCGCACAAAGtgcctccacctccacctctgCAGGGCTACATCAGCATTATTGACCACAGTTTTGCCTCCACAGCCCCTCAAGATGCACTGCGGAAGCTGCTCACTGGTCACTAGCTCAGGTCACCTGACAGGCGGAGGACGGGGCAAGGAAATCGACAGTGCCGAGTGTGTGATCCGTATGAACGACGCGCCCAGTGGCCGCAGTTTTGGTCCCGACGTGGGCCAACGCACTACCCTGAGAGTGATCGCGCATTCTAGCATGCAGCGCGTCTTACGCAGCCGCCACGAGCTGCTCAACTCCAGCCACGACACCGTGTTCATCTTCTGGGGCCCGAGCAACTACATGCGGCGGGATGGGAAGGGCCTGATCTACAACAATCTGCGCCTCATGAACCAAGTGCTGCCCAAGCTTAAGGTCTACATCATCTCCTGGCAGAAGATGCTGCAGTTTGACGAACTCTTTAAAAAAGAGACGGGCAAAGACAGGAGGACATCTAACTCCTGGTTAAGTACGGGTTGGTTCACGATGACGATAGCCCTAGAGCTGTGCGACCGAATCAATGTTTACGGCATGGTGCCTCCAGATTTCTGCAAGGAAGCTCAACACCCATCCGTCCCGTACCATTATTACGAGCCCCTGGGGCCAGACGAATGTGCTATGTACATCTCCCATGAGCGCGGACGCCGAGGCAGCCATCACCGCTTCATCACAGAGAAGCGCGTCTTTGCTAACTGGGCACGGACGTTTGACATCCATTTCTACCAGCCCGACTGGAGCCCAGCACCTTTACCCAAAAACAGCACAGAGACCACAGTATTGCTTCAGTCACAGAGGACGTGACTCCAAACTTTGGGTATTCACAATAGAGCTATTGTGTCCACAGGCTAATACATACAAAGAActgtcttgcttttttttttttctgcagaatcGAGAGCTCAACAAGCATCCAGTCTGTGTTTATGCTATGGATGCATTGACATTTCTAATCCACGAAACAGAGACAACCTGGCATTTGTGGTACTTTTTGGATACCTGTGACTGATAGAGTTCCACAGGGCTCCGTGCGGGGACCACTTTATTTTGGACAAACGCTCAAGATAGAAGCATGTGTAGAAGAGTTAGTGAAACCTGAGATAAATCATGACAACATATTAGTGTTAAGGTCTGTATGGCGATGAATAAATCCTGGATGATATTGGAAGCATCTACAAATGTCCACTGTTACCTAAAAGAGGCATgaatatgtcatttttatatatttgggAGACGAACTTTTAGCTTAGTCATTTTTGATCTAACAGtacaaaaaaagttttcaggATTCAGCTCATAGCGCAAAATGATTTAAGGAAGCTATTAGGAGTAGAATATTATTTAAGATGGCCTTATTTTGGTCTTAATTgtactgttttttaattttttacccATCATATTTTTCTGTTACAGATGAAAGAccaagtttcttttttttttttttgcacaattctcagGATCTGTTGcgttttctaaaataaattgtattgtatatagTAGAGCATACACACAAGGTACGAGAATATATGTAAGTTATTTACAATTTCAAATAAACAGTACAAAAACTA

Function


GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0097503 sialylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0001665 alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity molecular_function

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU86455 lncRNA upstream 10850 28933983 ~ 28934309 (+) True G72913
TU86452 lncRNA upstream 13761 28931076 ~ 28931398 (+) True G72910
TU86429 lncRNA upstream 26761 28917742 ~ 28918398 (+) True G72892
TU86423 lncRNA upstream 29901 28914783 ~ 28915258 (+) False G72889
TU86425 lncRNA upstream 29970 28914629 ~ 28915189 (+) True G72889
TU86462 lncRNA downstream 10491 29053486 ~ 29054218 (+) True G72917
TU86528 lncRNA downstream 138772 29181767 ~ 29196118 (+) False fubp1
TU86551 lncRNA downstream 256140 29299135 ~ 29301133 (+) True G73000
TU86633 lncRNA downstream 440267 29483262 ~ 29524242 (+) True G73072
TU86630 lncRNA downstream 476113 29519108 ~ 29521022 (+) True G73069
XM_026936508.2 mRNA upstream 14627 28923611 ~ 28930532 (+) True cope
XM_034303522.1 mRNA upstream 38763 28901530 ~ 28906396 (+) True LOC117597035
XM_034303853.1 mRNA upstream 57603 28885151 ~ 28887556 (+) True LOC117597120
XM_034303521.1 mRNA upstream 76981 28863057 ~ 28868178 (+) True LOC117597034
XM_026936512.2 mRNA upstream 102397 28832373 ~ 28842762 (+) True txndc12
XM_026936490.2 mRNA downstream 37189 29080184 ~ 29128564 (+) True ak5
XM_026936489.2 mRNA downstream 129761 29172756 ~ 29184256 (+) False miga1
XM_026936488.2 mRNA downstream 129761 29172756 ~ 29184256 (+) True miga1
XM_026936485.2 mRNA downstream 142430 29185425 ~ 29196149 (+) True fubp1
XM_034303613.1 mRNA downstream 142430 29185425 ~ 29196149 (+) False fubp1
TU86406 other upstream 33055 28874356 ~ 28912104 (+) True G72873
trnat-ugu_8 other upstream 1323776 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 1324482 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 1387257 27557765 ~ 27557902 (+) True LOC113540696
XR_003404069.1 other upstream 1388511 27556517 ~ 27556648 (+) True LOC113540695
TU86682 other downstream 576998 29619993 ~ 29623037 (+) False asip2b
TU87615 other downstream 1703136 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 1703136 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 2018735 31061730 ~ 31097888 (+) False spsb4a
TU87898 other downstream 2308266 31351261 ~ 31353144 (+) False c4h22orf39

Expression Profile


XM_034303337.1 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 0.06.
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XM_034303337.1 Expression in each Bioproject

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XM_034303337.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 0.06.
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