Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026936525.2 |
| length | 1318 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 6 |
| gene id | LOC113540207 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 19481055 ~ 19485146 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006413 | translational initiation | biological_process |
| GO:0006452 | translational frameshifting | biological_process |
| GO:0045901 | positive regulation of translational elongation | biological_process |
| GO:0045905 | positive regulation of translational termination | biological_process |
| GO:0008612 | peptidyl-lysine modification to peptidyl-hypusine | biological_process |
| GO:0043022 | ribosome binding | molecular_function |
| GO:0003743 | translation initiation factor activity | molecular_function |
| GO:0003746 | translation elongation factor activity | molecular_function |
| id | description |
|---|---|
| K03263 | EIF5A; translation initiation factor 5A |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU79674 | lncRNA | upstream | 5581 | 19474495 ~ 19475474 (+) | True | G67227 |
| TU79649 | lncRNA | upstream | 29663 | 19382553 ~ 19451392 (+) | True | G67209 |
| TU79647 | lncRNA | upstream | 105335 | 19373556 ~ 19375720 (+) | True | G67208 |
| TU79640 | lncRNA | upstream | 129151 | 19345844 ~ 19351904 (+) | True | G67205 |
| TU79644 | lncRNA | upstream | 129151 | 19345844 ~ 19351904 (+) | False | G67205 |
| TU79687 | lncRNA | downstream | 14063 | 19499209 ~ 19501228 (+) | True | G67236 |
| TU79722 | lncRNA | downstream | 58900 | 19544046 ~ 19641619 (+) | True | G67262 |
| TU79734 | lncRNA | downstream | 133536 | 19618682 ~ 19621531 (+) | True | G67271 |
| TU79757 | lncRNA | downstream | 258494 | 19743640 ~ 19750374 (+) | False | G67291 |
| TU79758 | lncRNA | downstream | 258494 | 19743640 ~ 19760630 (+) | True | G67291 |
| XM_034303433.1 | mRNA | upstream | 10093 | 19455026 ~ 19470962 (+) | True | LOC113540575 |
| XM_026937261.2 | mRNA | upstream | 73428 | 19394160 ~ 19407627 (+) | True | LOC113540663 |
| XM_034303203.1 | mRNA | upstream | 75845 | 19394155 ~ 19405210 (+) | False | LOC113540663 |
| XM_026937115.2 | mRNA | upstream | 87937 | 19388605 ~ 19393118 (+) | True | gpr78b |
| XM_026936566.2 | mRNA | upstream | 108300 | 19354380 ~ 19372755 (+) | True | trmt44 |
| XM_034303403.1 | mRNA | downstream | 166751 | 19651897 ~ 19694516 (+) | True | LOC113539894 |
| XM_026935817.2 | mRNA | downstream | 382005 | 19867151 ~ 19872149 (+) | True | LOC113539773 |
| XM_026936965.2 | mRNA | downstream | 396782 | 19881928 ~ 19886701 (+) | True | slx1b |
| XM_026937193.2 | mRNA | downstream | 458594 | 19943740 ~ 19953223 (+) | True | si:ch73-71d17.2 |
| XM_026937262.2 | mRNA | downstream | 486165 | 19971311 ~ 19983277 (+) | True | ntn4 |
| TU79253 | other | upstream | 622403 | 18856456 ~ 18858652 (+) | True | G66864 |
| TU78855 | other | upstream | 1272491 | 18197312 ~ 18208564 (+) | True | G66492 |
| XR_004577948.1 | other | upstream | 1350550 | 18113444 ~ 18130505 (+) | False | frem1a |
| XR_003403977.2 | other | upstream | 1470093 | 18000158 ~ 18010962 (+) | False | ctdnep1b |
| trnat-agu | other | upstream | 1716521 | 17764461 ~ 17764534 (+) | True | trnat-agu |
| trnah-gug_4 | other | downstream | 343165 | 19828311 ~ 19828382 (+) | True | trnah-gug_4 |
| trnah-gug_5 | other | downstream | 343673 | 19828819 ~ 19828890 (+) | True | trnah-gug_5 |
| trnar-ucu_2 | other | downstream | 615879 | 20101025 ~ 20101098 (+) | True | trnar-ucu_2 |
| TU80337 | other | downstream | 662649 | 20147795 ~ 20154771 (+) | False | fcer1g |
| trnaa-cgc | other | downstream | 867268 | 20352414 ~ 20352485 (+) | True | trnaa-cgc |
