RNA id: XM_026936528.2


Basic Information

Item Value
RNA id XM_026936528.2
length 3887
RNA type mRNA
GC content 0.47
exon number 2
gene id fam78ba
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27441509 ~ 27447248 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gctgctccgtGCGCGTGACCTGAATAACCATCAGCACTAGTTACGATTGAACAGCGACCGTTGTGTTTTACCGTGAAAATAAAAACGTTTCGTTTAATTCCTTGATTTATGAGTTAATATGGATACATTTTTAATCTAAAGATGCATCCCGAGGATTATTCAGATTCGACGGGTTTGTGTTTCCGGTGCCGTCATCCAGCGCGCGCGTGTTGTCTGAGCCTCGGCTCGAGCAGGATCCCTTCGGCTCGGATGCTgctgccgccgccgccgcctCTTTCAGCACCTCGCCACTGACATGACGGCGGGGACAGAGGGCGCAGAGACAGGCACGGTGGGGACGTGGGAACCGGAAACCGAGCGCATCCGAACCGCGTCGCGTGCGCAACCGAGCGCGGGGACAAACGCCAAGGGCAGTGCGGCACTCCGCGGGAGGagaggtggaggaagaggaggaagaggaggaggaggtggtggtggaggaagagaaggaagaaggGGGGGTCGAGTAGAGCTACCTTTCACCTCGTTTCTCTACACTCttctttattcctttcatttttattgtttttccctCCAAAATGGCTTAAACGCGCGCGCGACATCCGTGTCATTCCCTTTGGTCGCTTGGTAACCCGCAGTGGCGCTCGCGACCCACATCGCTCTTTCTGAATGAATAGACCTTAATTTAAATACAGCTGAAattctctctttcctttattattattattattttatttcacaaagtCGGAGTGTTAATTAAGTAATTTATGTCATTATCAGTTCTTTATAGATTCTGCTTTTTTATCATAAAATAGCGACACTTATCCGCACTAGCTAACTAGGCTAGCTTCCTAGTGAATGTCCGTTACTTTTTTGAcgtcagtttaaaaaaaaatagagctcGCGAGCCACTTATTATTTGTATAAACTAATTAACgtgttaattattaatagttAAATAATTTCTTCTTAAACTTCTTTAAGAAAACCTcagtatttgattttttttttgctaagctAACTCCGCAACTTCATTAATGTATTCAGGGAAAGTTAGCTAGTGATGTTTTATCCTTAGCTAGCTTAGCTTACCTTAGCTACTGCTACAGCTACAGCAGGCTAGCTAACTGTTTTAAACGGATCTGTTTATGTGTTAGGAAGAAATGGCtatatgtgtaatatttaatgaagaaactgatattattgttattaaccAAACCTTTCAATCACACTGCATAAAAATTACCTCAGAAATAGGAGCATAGCGGCAAAGCTAATTTTGTAGCCTGACAacagctcactgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgagtgtagttcTACACTACAATACATTATTAGCAATACGTCAACGTTTTTCCAGGTGGTAAGGTGCAAGCGTTACTGTTACATTGCTAAGGGACTTGAACATATGAGCGTAAGGCTCCGAACTGTCTTGTTCCTGCCGTCGCTTCTCGCGATCGCGCTCGCGCTCCTCGCAGGCGGGGCCATGGGCTGCCTCCAGAGCGTGGCGTGTAAGCCGCGCGTGCGGCGCGAGAACATCGTGGTCTACGAGGTGTCGGCGTCCATCGACCGGAGCCCCACGGTGGTGGAGGAGAACTCGCCCATTGTGCTGCGTTACCGGACGCCCTACTTCCGCGCCTCCGCCGGGGTCGTGATGCCGCCCGTGCCCAGGAACGAGACGTGGACGGTGGGCTGGATTCAGGCGTGTACGCAGATGGAGTTTTACAACACGTACGGAGACGCGGGCGCGTCGAGCTGGGAGCTGCCGGAACTGCGCGAAGGCCGCGTGAAAGCCATCAGCGACTCAGATGGCGTCAGCTACCCGTGGTACGGCAACACTACAGAAACCGTGACTATCACAGGTCCGACGTCCAAGCCGTCGCGCCTCACCGTCAGCATGAACGACAACTTCTACCCGAGCGTGACGTGGGCGGTGCCCGTGGGCGAGAGCAGTGCCCCGGCACTCACTCGCGTCACTCGTGACCAGAGCTTCATCACGTGGTTGGTGGCACTGAACACTGTGACGCGTGAGAAGATCCTGCTGCAGACGGTGAGGTGGCGCATGCGGGTCGACATTGCCATCGATCCTACGATGCCGCTGGGCTCCCGAGCTACTCTGGTCAGCCAAACGTACCAGGAACAGCCGCTCATCCTCACCAACAATGAACCCATTCCGCCAAACGCACTGACGAGACCCAACGCCAATGATGCACAGGTGTTAATGTGGAGGCCAAGGAGGGGGCCACCGCTAGTCGTCATCCCCTCCAAATAGACCAGTTAGTCAAAACTGGATCACGGTGTAATGTGGCAAAAATGCATCCATTAGCATCTGTCTGCCCTCTGTGCAGGAGTATGGCATCATGGAAAATCGTGGGAGGGTTAGTGGACGGTTTTACAAATGAATGGTCAAAACTTGTCTGTGCGTGAGCAATGGATGATGGGAAATGAAGGGTTCCTCAATGATGGACTGCTAATGGAGAAATGAATCCCAATGCTGAGAAAGGTGAAAAATCAGTTTAACAGTTATGTCGGACTGTAGGGTGACGCTCCTCAGTGCAGGACGATAAGTACCCTAATcttgatcagtgattgattgATACAGACTTCATTGTGCACAAGCAAGTGGCACTGAATTACACCAAACTCGAGAAGTATTATTAGTATAAGAAGCTTCAGATCTTTCACACCGCTTTAGAGAATGCTAGCAGAGATGCTTAGCTAGCAAACATGACTCAAGCAGTGACTGAGAGGTGTAGCATGATTAGcgatgtctcacacacacacacacagacacacagaaagctGGTAGGAGTGTGTTTCTGTCCTCCTGCCTGATCCGGAACGAGTTTCCCCTCACTCTTCCTCACTCAGGTGCTGCACTGTAGGCAGTTTCCATATTAGCACACACTCCATCTGTCCTCCATCCCTCCTGCATCCCTCTCTCCCGTCCCCCATCTGTCCTCCACCCCACCCCGTcctctcacacagacactctgCAGGTCCTTTCAGCATTAATTTTCCATCACGTAAACCTCCTACACCCAAGCATAGCTAATTATTGttaatcagcacacacacagacaaattaaatgaatgtgGAAATAAATCATGATTATTTTCGGGTAAAGGAAATGCAGGCAGTCGAAATGAAAATGCCTTCAAAAGTTAGTCTGCATGTGGTTAGTTTCTCCAtcagtctttttctgtctctctttttcttattctttttctatATCTCATTGTCTCTATCTGTCactatttatctgtctatctatctacccatctatctatctttaaATTATTCTCCAGTTAGCTCCCAGGTTAATTCCTGACCCTTTAACCCTATCAAGCCTACAAGGTAATCATGTGACTAAGGCGGTCTTGTGACTGGAgagctcacacatgcacacacccacacccacacacacagtgttgtatCAAACCAGGATGTTAAACACCAGCAGCATATTTGGACGTCACACCTGAAAATCATTTTGATCTTAAACGATGACATTTTCTTAGAGGAAAAATAAACTAGTTTCTCAAAAttgaaacaaataattaaatgaaagacCTTTCTTGAAGATCAACACTTAACGCCTCTGCAGCTGATTTCACTTTGAATATTGCTTCTTCGTATCCATATCAAGTCTATGCAATGGCTGCACACGTGCTAGCTAACtgttaagaagaagaagcctcGGACTCAGAGCATGGAAAGTTGTTTAAGCGACGGAGGAGATTCACTTTTCTTGCATGCCAGTGGTTTTATTGGAAACAAACTGTGATGTGTTTCTGTCGTTTGTGTTGAAGGGTGGTGAACTCTTCAGGTCGGCTTTGAATAAAAGAATACTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85353 lncRNA upstream 12287 27428419 ~ 27429222 (+) True G72005
TU85334 lncRNA upstream 35111 27405579 ~ 27406398 (+) False sgip1b
TU85328 lncRNA upstream 60437 27380848 ~ 27381072 (+) True G71980
TU85325 lncRNA upstream 69831 27371473 ~ 27371678 (+) True G71977
TU85279 lncRNA upstream 146145 27293356 ~ 27295364 (+) True G71942
TU85362 lncRNA downstream 12422 27459670 ~ 27460197 (+) True G72012
XR_003404004.2 lncRNA downstream 36572 27483820 ~ 27487711 (+) True LOC113540179
XR_003404003.2 lncRNA downstream 36583 27483831 ~ 27487711 (+) False LOC113540179
TU85494 lncRNA downstream 105879 27553127 ~ 27555706 (+) True G72118
XR_003404048.2 lncRNA downstream 108837 27556085 ~ 27559110 (+) False LOC113540592
XM_026935918.2 mRNA upstream 14815 27421285 ~ 27426694 (+) True bcl6ab
XM_026937130.2 mRNA upstream 28729 27410223 ~ 27412780 (+) True tctex1d1
XM_034304152.1 mRNA upstream 35699 27384807 ~ 27405810 (+) False sgip1b
XM_026937314.2 mRNA downstream 13020 27460268 ~ 27466505 (+) True imp3
XM_026936474.2 mRNA downstream 20800 27468048 ~ 27477673 (+) False zgc:55943
XM_034303667.1 mRNA downstream 21035 27468283 ~ 27477673 (+) True zgc:55943
XM_026936475.2 mRNA downstream 21035 27468283 ~ 27477673 (+) False zgc:55943
XM_026935807.2 mRNA downstream 48600 27495848 ~ 27508199 (+) True abi1b
XR_003404108.2 other upstream 328255 27113148 ~ 27113254 (+) True LOC113540738
XR_003404105.1 other upstream 777427 26663971 ~ 26664082 (+) True LOC113540735
TU84616 other upstream 1065730 26353189 ~ 26375779 (+) True LOC117597079
TU84618 other upstream 1077276 26353189 ~ 26364233 (+) False LOC117597079
XR_003404060.2 other upstream 1148725 26288294 ~ 26292784 (+) False zgc:66427
trnat-ugu_5 other downstream 42005 27489253 ~ 27489325 (+) True trnat-ugu_5
XR_003404069.1 other downstream 109269 27556517 ~ 27556648 (+) True LOC113540695
XR_003404070.2 other downstream 110517 27557765 ~ 27557902 (+) True LOC113540696
trnat-ugu_6 other downstream 173357 27620605 ~ 27620677 (+) True trnat-ugu_6
trnat-ugu_8 other downstream 174063 27621311 ~ 27621383 (+) True trnat-ugu_8

Expression Profile