RNA id: XM_026936530.2


Basic Information

Item Value
RNA id XM_026936530.2
length 3249
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC113540212
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 21767052 ~ 21776821 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTGCGAGGCGAGAGCTCTGTGCTAGCGGACCTGTGATGTGATAGAGGCGTTTTTTCCCGTATCTGAAATATTAGAACCGCTTGGAGTTGAATGTGAGCCCAAAAGCCCTGGAAATTTCCACAATATAGTCTCGGAGAATTGGTTCTAGTTCAGTTCGCAGCTTAAAAAGTTCTCGTTCGGGATTCGACTCGAATTACTGCGTTCGTTTGAAAGAGTGGTTCAGAAGTTTTTTTGGAGCTCAGGACAAGCAGTAACGCAGAGGAAGACGCGTTCACTTTGTGCTACTGAGGTTTATAAAAGATAAGTCGataaaatattgtttctgttgtttgttGGAGTTTTTCACGCAAGGTTTTGCCTGAGGATTAAACTTTTCTGCTGAATTGTGTGTGTCGTGTCGAGCGAAATGAAAGacgAGTTCTCTGAAGAAGAGGACGTCCAGTCATTTGGATACAAGAGATTTGGTTTTCAGGAGGGAACTCAGTGTACTAAGTGTAAGAGTGAGTGGGCATTGAAGGCAGCTATAGGCCTGCTCTACGTTCTCTGCATCTTACTCACCATTGCTGTAGCCATACTGGGTTACAAagTGGTTCAGAAAGTAGATGGTGTTACTAAGGGAATGCACAATTATGAGGGCAAAATCACTGCTATGGAGACAGATGTAAGAAAATTAGATGATGAGTCTGGTATGACATCGAAGAACACTTCCAGTGAGCTGCAGATGTTTCGTTCTGGGTTATCAGCGTTGCGTCAAAAGCTAGCTGCAGCCTCTGACTCCGTCAACAGCAATGCTGCTGTCCTGCAGCAGCTCCGAGCCTCATCACAAGATGTGCTTTCGCTGCAGGAATATTTGCGCTCACAGCTAAATGACCATGCCAGCACTCTGCATGCTGCTAATGCTACGCTATTTTCTGTTGCTGCAAACACACCTGTGCTGCAGCAGGACACTGCACACCTTCAGCACAACTTGCAGACACACATCAATGCACAGCGCATGCTACAGCTTTCTATCGACCGTCTCAACTTCACTCAATTGCAGCAGGACACTACTACAGCAGCACTGCAGCGTACAATGGAAGCAGCAGATATGAATACGCAGAGTGTCTATAGTGACGTGCTAACGGTGCGCCGGGAGACACAGCTAGTGGGCAGCATTGAGGACTGGATTAGAGAAAAGATCATTAACCTGGAAAAAGCTGAATTTAATGCATCAGCCCATGTTCTGGCCACTGCACAAGGACTGGGGGAGGTAAACATGCAGCTAGCTAGCATCTCCAGTCAAATTCTGAATATTAGCACACTCAACGATGGTAACGCAGCAAACCTGAGAGAGCTacaggaacagcagcaggatTATGGCAGTCGAACAAGTGCTCGCTTTGACAGAATGGAGGAAAGGCTGGATGCAGCAGAAGAAAATGTTGACAGGGTCACAGGGAATGTGAGCTATACTACATGGATGCTGGGGGGAGTGAACGGAGAACTGGGTGCTTTGCGGAGCTGCTCAGACACAGTGGGACAACATTCAGATCTCCTGCTGAATCTAAACAGGACTCTGGCTGAGACACAGGCAGACGGGTCTGCTCTAAAGGCCCAGCAGGATGATCTATCAGCTCGGCTAGACAAAGAAGTCAGCAGTCTTTCCATGATCATGGAAGAAATGAAGCTTGTGGACAGCAAGCACTCCCAGCTCATCACCAATTTTACAGTATTGCAGGGCCCTCCTGGTCCAAGGGGTGCCCGTGGTGAAAAAGGCCCTCCTGGTGCAGGTGGTCCTCCTGGTCAGAAGGGGGAGAGAGGTGATAAAGGAGAGGCAGGTGTTCCAGGCACTCAGGGAGAAAAAGGAAGCTCTGGCCCTCCTGGTTTTTCAGGTGTCCCAGGCATACAAGGGCCTCGTGGTAGCCCAGGACCAAAGGGCTCACGAGGGTCAGGAGGCCGTGCAGGACCCCAAGGCACAAAAGGAGAACCTGGCACACCTGGACTGCCAGGCAGAGATGGGATGCTAGGGCCCCTGGGTCCTCAAGGACCACTGGGTATTCGTGGACCAGTTGGTCCTGTAGGGGACCCAGGACACATGGGACCACCAGGGCCTATGGGACCTCCAGGACCACCAGGGTTGCCCGGCAGCGCAGCACCAGTGCCAACGATACCTGCCCCACCAGAAGGTGCTTCACCACTAGTTGCTACAAGATCTCTGCCAGGCGGAGTTGGCTGCCCTGCTGACTGGGTATGGTTCAAAAACAGCTGTTACTTCTTCTCTACTGAAAAGCTCACTTTTGACGATGCTCTTCAAAAGTGCAATGGCATGTCTTCATCCATGGTCATCATCAATGATAATGAAGAACAGGGCTGGATACATCTTCACACAGTCGGTAGAGGCTACTTCTGGTTGGGATTGACAGATCGACAAAAAGAGAATATTTGGCGTTGGGTGGATGGCTCAGAGCCTACCTTCAAGAAATGGAGGCCTGGTCAGCCTGATAACTGGAGCCATGGACATGATGAAGGAGAGGACTGTGCAGGCCTTGTTCATGGAGGCAAGTGGAACGACTTCTACTGTGACGACCAGCTTGGTTTCATCTGCGAGAGAGCAGTAAACAGTTGaaatctgtgaaaatggaaCAGTGTGGCAACAGTGTACCCcagtgagtaaataaatatggtCAAATGACCTCGCAGCTTGTGTCAGAGATAGATGACTCTCTTTGACAAGTAAACCTGATGCAGGTACGACGAATGAGGAAAGACCATGTTGTAGAAGTAATAAGCTGCAGTGTTCAGTGCAAGGTGAATTGTTTCCTGTCCACTGGCCACTGACATTAAATGATGGTCTCATTCCTGGACAGTCAGTTCATAAACATCAAGGAGCTATTAACATTCAAGCTGTGAGCTAAACAGGTGTAAAGAAGCAAATTAATGTGTATTTCAGTACTTTATGTAATTTTCTactattttatgtatataattttgaaTAGTTTTATTCCACATTTGTTCTTGTATTTTTCAATGAGTCCTAATCTgccatttctttatatatgcccCCTTTTGacccacacatacacttaaCTCCTacctattaataaataaataaataaataaaagaacaaaggATATAATAAATATGGATTTCATTTCTATTATGTTTGTTCATTCTTCTAAAATATTTGATTAACTGCATTTTTCCAACACTTATTATTGATGTGATAAATAAGAAGGTAATTAAAAAATTCTACACCATAAGTGCATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81415 lncRNA upstream 4770 21754108 ~ 21762282 (+) False LOC113540377
TU81416 lncRNA upstream 4823 21754108 ~ 21762229 (+) False LOC113540377
TU81417 lncRNA upstream 17733 21732946 ~ 21749319 (+) True G68621
TU81294 lncRNA upstream 279564 21486974 ~ 21487488 (+) True G68523
TU81189 lncRNA upstream 445646 21321145 ~ 21321406 (+) False plag1
TU81502 lncRNA downstream 137985 21914806 ~ 21917776 (+) True G68687
TU81775 lncRNA downstream 467767 22244588 ~ 22244825 (+) True G68947
TU81789 lncRNA downstream 606273 22383094 ~ 22387745 (+) True G68955
TU81788 lncRNA downstream 616018 22392839 ~ 22397101 (+) True G68954
TU81842 lncRNA downstream 750507 22527328 ~ 22527556 (+) True G68999
XM_034303777.1 mRNA upstream 4751 21754080 ~ 21762301 (+) False LOC113540377
XM_026936822.2 mRNA upstream 18339 21741189 ~ 21748713 (+) True enosf1
XM_026935991.2 mRNA upstream 126895 21629077 ~ 21640157 (+) False mettl4
XM_034303841.1 mRNA upstream 215242 21536003 ~ 21551810 (+) True LOC113540483
XM_026936686.2 mRNA upstream 231419 21496955 ~ 21535633 (+) False myom1b
XM_026936150.2 mRNA downstream 10369 21787190 ~ 21793201 (+) True LOC113539992
XM_026936379.2 mRNA downstream 30903 21807724 ~ 21828839 (+) True mrc1a
XM_026936380.2 mRNA downstream 30904 21807725 ~ 21828838 (+) False mrc1a
XM_026936381.2 mRNA downstream 52203 21829024 ~ 21843884 (+) True LOC113540130
XM_034303784.1 mRNA downstream 52203 21829024 ~ 21843884 (+) False LOC113540130
XR_004578015.1 other upstream 4751 21752416 ~ 21762301 (+) False LOC113540377
XR_004578017.1 other upstream 4751 21754018 ~ 21762301 (+) False LOC113540377
XR_003404030.2 other upstream 4751 21754080 ~ 21762301 (+) True LOC113540377
XR_004578016.1 other upstream 4751 21756781 ~ 21762301 (+) False LOC113540377
XR_004578018.1 other upstream 4751 21757848 ~ 21762301 (+) False LOC113540377
TU82445 other downstream 1541683 23318504 ~ 23320343 (+) True G69509
TU83028 other downstream 2331974 24108795 ~ 24109889 (+) True G69971
XR_003403979.2 other downstream 3082205 24859026 ~ 24871263 (+) False kif2c
XR_003404013.2 other downstream 3931006 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 4121314 25898135 ~ 25901843 (+) False LOC113539772

Expression Profile