RNA id: XM_026936540.2


Basic Information

Item Value
RNA id XM_026936540.2
length 3154
RNA type mRNA
GC content 0.48
exon number 14
gene id slc6a9
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 24507205 ~ 24561278 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTATAGAAAAGGGAGGTCCTGAGTTGTTACCCGGAGAATCTGGTGCTAAAAGAtttatgcaacatttttttttctttttttaattgtctaaGGAAATTCTCATTTCTGGCCAGTTTACAGCAGAAGGGAGCGAGTGATGCATAGAAAAGTTCCTGGATTAGTGTGGAATTAGCATAAAGCCCGGCACTGCAAAGTAGCCAGCAAGTGAACAAGAGGAGTGAGAGAGCCAACGtgcgagaaagagagaaagcacagAAGGAAAGACACACATCCAGCAACACGAGGACAAGTCCCAGAGAGCAGAGGACCTTCATCCTTCTGCGAGAGGACAGCATAGTTTGCCAATATGGAGGAAAAACAGTTTTCTGGCATTTTGAATGGAGCGGTTCCAGGGGAACAAGTGAAGAAGGATGAGAATTCTCGACGAGGAAACTGGGGGAACCAGATTGAGTTTGTCCTGACTAGTGTGGGCTACGCAGTGGGGCTGGGAAACGTCTGGAGGTTCCCTTACCTCTGTTACAGGAATGGTGGAGGTGCCTTCATGTTACCGTACTTTATCATGCTGGTGTTTTGTGGCATCCCACTGTTTTTCTTGGAGCTCTCCTTTGGCCAGTTCACATCATTGGGCTGTCTGGGAGTGTGGAAGGTCAGCCCCATGTTCAAAGgtgTCGGCTATGGAATGATGGTGGTCTCCACTTACATTGGCATCTATTACAATGTGGTGATCTGTATCGCAATCTACTACTTTTTCATGTCCATGACCAATCTGCTGCCATGGACATACTGCAACAACCCCTGGAACACCCCAGACTGCAGTGGTGTAGTGGGCACACCGCGGGCAAATGCCTCCTTCGCCAATGTCACTGCTAATGTAGTGTCAGGCCTCACTGAGGTGATCAGCCACACCAAGAGGACGAGTCCCAGTGAGGAATACTGGAGGAACTATGTACTGAACATCTCAGATGGCATAGGTAACTTTGGTGAAGTGCGCCTCCCCATCCTGGGCTGCCTGGCTGTCTCCTGGGTGGTGGTGTTCCTCTGCCTCATCCGTGGGGTGAAGTCCTCTGGCAAGGTGGTGTACTTCACAGCGACCTTCCCCTACGTGGTACTGACCATTCTCTTCATTCGAGGCATCACGTTAGATGGTGCCATCAGTGGAATTCAATACTACCTCACTCCACAGTGGCAGAAAATCCTGGATGCCAAGgTGTGGGGTGACGCTGCTTCTCAGATTTTTTACTCTCTGGGCTGTGCCTGGGGTGGGCTCATCACCATGGCTTCCTATAACAAATTTCACAACAACTGTTTCAGAGACAGCATCATTATCAGTGTGACAAACTGTGCAACAAGCGTGTACGCCGGCTTTGTCATCTTCTCCATCCTGGGATTCATGGCGCAGCACCTGGGCGTGGACGTGTCCGAAGTGGCTGACCACGGTCCAGGCCTGGCCTTCGTCGCCTACCCAGAAGCCCTGACGCTGCTGCCCATCTCGCCACTCTGGTCGctgcttttcttcttcatgCTAATCCTGCTGGGTCTCGGCACACAGttCTGTCTTTTGGAGACGTTGGTGACAGCCATAGTGGACGAGATCGGCACGGACTGGATCATCCGAAACAAAACCTTCATCACGCTTGGAGTGGCCATCCTCGGGTTTCTCTTAGGAGTGCCATTGACCACACGGGCAGGAATATACTGGCTGCTGCTGATGGATAACTACGCTGCCAGCTTCTCACTAGTCATCATCTCGTGCATCATGTGCATCTGCATCATGTATGTTTATGGCCACAGAAACTACTTTAAGGACGTGGAGATGATGCTGGGCTTCCCTCCACCGGTGTTCTTCAGGATCTGTTGGAGGTTCATCTCTCCGCTTATTATCTCGttcaTCCTGATCTTCACTGTGATCCAGTACAAACCCATCACTTACAATGACTACGTGTACCCAGACTGGTCTCTGGTCATCGGCTTCTGCATGGCCCTGTCCTCGGTGATCTGTATTCCAATCTATGCCCTTTTCAAGATTGCCATGTCTGATGGAACCACGATTTTGGAGCGGTTGAAGAACTCGATGAAGCCACATCCCAGCTGGGGTCCGGCGCTGCAAGAGCACCGCAAGGGCCGCTACGCGATGGCCGGACCTGAATCCGTGGAGGTGCGTTCCCTTAAAgatgaggagaaagagaaagatcaggataaagagaagaaggaagagaTCGGGCTCACCATAAAGGGCAGCAACGGTTCCACACTCAACCCGACACCCAGTGTATAGACGCGAGGCCACACCTGCTGAACCTTTACATATTGTAAGGGCTTTATTACTCCTAACCTCTAGAGAGAATCGGTTCTCATCCCAAcccctcttttttcctttttaatttaataatgctGTTTTTGTAAGTACAAAAATGTGTTCATATGCATACACAGGAAGTCTTTTATGCATCCCTaccatgtgtatatatagtgcAGCGTGGGATATATTGGTTTCTTTCTCCTTCCATGTAAAATGTATCTGGAAATGTGACTACTGTTGCTGCAGCTGTAGGTTTCGGCTTGTTGTGTGTACAGCGGTGACAGTGCTGGTCGGGTTAAAAGCTGAAGACCAAATGTTCTTTGAGTATAGTGAACATAccatctataatctataatcatATCTCAGCCACATGAAATCTTTATTTTGGGATTTCTGGTTTTTTGCCCCTGCCTGTAGCTTTTCATCAGTGGTTGTATTTGGTCGTTTTTAACAGAACCCACAGTTTTTACTCGAGTAAACAGATGCACAAGACGAAAGCACAAAGGATATTTTGCCTTCAGCTTTTAGAACAGCCACTGAAGGAAACTCCCTCGATCTAAGCACATTAAGTTCCCAAACCCATTCTCAGGGTTGTGcacaattttcctttttttttctaaaccttTTTCCAACAGCTTGTGATCATGCTAACATTTTTAACTCAAGAGACGACTCTTTGGCTCTGACTAGTCTTccattttgaaaattaaaatatgctATATGTTGAGCGAACGGATCATTTGAGAGATGGCAGGAGGGATGTTGCCATAGACTCAGTACTGtagtgtgtgcacacacacaaggattGTCATGGGGGTAGAGGCATGCtgcctccaaaaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0060080 inhibitory postsynaptic potential biological_process
GO:0060092 regulation of synaptic transmission, glycinergic biological_process
GO:0015816 glycine transport biological_process
GO:0007626 locomotory behavior biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0003333 amino acid transmembrane transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0015187 glycine transmembrane transporter activity molecular_function
GO:0005283 amino acid molecular_function
GO:0005328 neurotransmitter molecular_function

KEGG:

id description
K05038 SLC6A5_9, GLYT; solute carrier family 6 (neurotransmitter transporter, glycine) member 5/9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83047 lncRNA upstream 368317 24138635 ~ 24138888 (+) True G69987
TU83005 lncRNA upstream 400982 24028106 ~ 24106223 (+) False klhl18
TU83023 lncRNA upstream 422987 24083606 ~ 24084218 (+) True G69966
TU82994 lncRNA upstream 497345 24008464 ~ 24009860 (+) False G69946
TU82993 lncRNA upstream 498542 24007703 ~ 24008663 (+) True G69946
TU83213 lncRNA downstream 4967 24566245 ~ 24566613 (+) True G70129
TU83214 lncRNA downstream 5722 24567000 ~ 24567318 (+) True G70130
TU83218 lncRNA downstream 9370 24570648 ~ 24570850 (+) True G70134
TU83222 lncRNA downstream 13058 24574336 ~ 24574570 (+) True G70138
TU83223 lncRNA downstream 21898 24583176 ~ 24583376 (+) True G70139
XM_026935888.2 mRNA upstream 28401 24476189 ~ 24478804 (+) True klf17
XM_026936902.2 mRNA upstream 97908 24388273 ~ 24409297 (+) False rnf220a
XM_026936898.2 mRNA upstream 98031 24294636 ~ 24409174 (+) False rnf220a
XM_026936117.2 mRNA downstream 25929 24587207 ~ 24597109 (+) True zgc:113531
XM_026936109.2 mRNA downstream 231017 24792295 ~ 24807404 (+) True kiss1ra
XM_026935923.2 mRNA downstream 297748 24859026 ~ 24871164 (+) True kif2c
XM_026935924.2 mRNA downstream 297749 24859027 ~ 24871164 (+) False kif2c
XM_026937276.2 mRNA downstream 433599 24994877 ~ 25013306 (+) True klhl20
TU83028 other upstream 397316 24108795 ~ 24109889 (+) True G69971
TU82445 other upstream 1186862 23318504 ~ 23320343 (+) True G69509
XR_003404030.2 other upstream 2744904 21754080 ~ 21762301 (+) True LOC113540377
XR_003403979.2 other downstream 297748 24859026 ~ 24871263 (+) False kif2c
XR_003404013.2 other downstream 1146549 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 1336857 25898135 ~ 25901843 (+) False LOC113539772
TU84572 other downstream 1667486 26228764 ~ 26229191 (+) True G71385
XR_003404061.2 other downstream 1727012 26288290 ~ 26292784 (+) True zgc:66427

Expression Profile