RNA id: XM_034303605.1


Basic Information

Item Value
RNA id XM_034303605.1
length 3735
RNA type mRNA
GC content 0.48
exon number 16
gene id tdrd7b
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16002159 ~ 16017892 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATCAGAGATGCAGTGAGAGAGAaggcaacagagagagagagagagagagagatggaataGAAGAGAAGGAGCTGAATGAAGATGCACATCACTGGCAGTGCTTTTGCCATTCGTCtgttgtttatcttttttcctccttctgttACTCATTGAATGCTCTTTCCTCACCTCTCCTCTTTGCCGAAGCTTCCAACCTGCTGAACGTTTAGCATAAGAGCAGTCTGGGCGACAATacgtcatatatatatatccctgaAGCAAGATCGGAAAAAGGAATCATTCACATTATTGCTGCACTCTGCATCTGAATGCTCTAATCTGTAACAGATGTACAATGCCATCGTCTTTCAGTCACGCACAGAGCCAAACCCAGGACGTCTCTCAGGCAGCCTGAATACCGGGGTCGTCAGGGTCGAGGCAGTGGCCGCACAGGGAGCATGAGGGAAACACAACCTGATGGGAGAGGCGGCAGAGTCCACAACACTCCACCAAACACACCTACCAGAAGGGGCAGTCTGACTTCTGACAGGTATGACAGATCGGATAAAAGGATGACCCTGCCATCCAGATTCCAAAAGGAAGTGCACACCCACCTGTCTAGGAACCCTCAACATAGCCATGCTCCTTCAAACCTTAATGAAAGCACCCCTCCATCAAAACCTCGGACACAATTAAGTCTCTACAGTCCCAAACTGGTGCAGTCCCGCCTCAAAGAGGTTCTAAGCAAGCACAGCAATGGCTTCTGGGTGTCTAAACTTCCACAAATATACCGAGAGCTATACAAGCAAGAGCTGCCCAGTGAAGCCTTGAAAGATCTGGAACAGTGGACCCATATTTGCACAGTTGAGAAACCATGCAGTAGCAAATCTCAGGAGCTACTGTTATACCCTGCCAAGGATGTTAGCCAAACCACTAACACATATAGCCTTGAAATGACGCACATCTCAGACAAGCAGTTTCCATCACCTCCAAAACCCCAGAAAGTCTCCAGAAAACCTAAGAATAACACATCAAGCCCACTGGCATGCCCCAAGGCTCTACCTGAGGACATCAAACAAAACCTAGCAGAGCTGCTTCTTAAGTACAGCAGTGGCTTATGGGCTCATGCCCTCCCCAAACTCTACCAGGATACCTACAAGACCAACCTGCCTGAGTATGTACTTGACAACCTGCCCTTGCTCTCAGATATATGCACCATTGACCACCCCGTGCCAGACAACCCCAAAAGGGCAATTCTTTATGTGAAGGTACTAGAGGATGAAAACTGCAATCAGACAGACTTGGCAGACCTGAAGGCGAGAGAGGAGGCAGGGAGACGTCTCAGTTCTCAATCCGTACCTCCTCTGCTTATTCCCAGGGAGGAGTACCCCTCAGTACTGGTGGTCGAGGCAAGCAGCACTAACAGTGTAGTTCTCAGATACATAGGTGAGGAATATTCCAAGGCCCAGGAAAAGCTGGAGGATGATATGAAGGAATTCTATAGACAGGATAACACCCGGAAGACACTGATCTCATTATCATCAGGCCAACTAACTGCAGTCATtgctgaagaagaggaagagatcCTCCGGGCACAAGTGTGTGAGGTCAAGACCGATAAAGTCAAGGTTTATTATGTGGATCATGGCTTTTCTGATGTTATTAGTAAAAGCAAGCTGCTTGAGTTGCATGAGAAATTTTTCAAACTGCCTTTCCAAGCTACCAAATGTAAATTGGCTGGCCTTGAAGCCTTTGCTCTGGAGCCAGCAGTGCTGAAAAAATTTGACTCCATGGCAAGTGGTAAAATCCTTTTGGCCGAGATCCTAGAGAGAGAAGACATTCCTTTGATGGTGTTATATGACACATCGCAGGAAGACGACATTAATATCAATGCTTGCTGTCTGAAAGCCCTGCAAGAGAAGTCTTTAGAGAACCCTCTGCAGACTAACAGTGCCTACATGAATGTGAGTGTGACtagtgtgtgttcagatggGATATTCTACTGCCAGCTGCCCTCTCGTGGTTTGACCAAACTCAGTGAAATCCTGGAGAAGACAGAGAGCTATTTCCACAACCAGAAATCTAAAGGCTCTATGGGTTCCTCACTGCGCCTAGACTGTTTCTTTGAAGAGGTCACATCAGAGTCGCTGGTGTCTAGACCTTTCTGTGGAAAAAACTGTCTGGCTCGGTACAAAGGCAAATGGTCTCGAGTTGAGATAACTAACCTGCATGGTAGCCGGGTGTTGGACATCCTGTTTGTGGATGTGGGGGTGCAGGCATCTGTGGAAGCCATTGAGCTGAGGGAAATCCCGCACCCTTTCTTACGTGACCTTATCACTATCCCGCCCCAGGCAGTGAAGTGCTGTTTGGCAGACTTGCCTGTCAGTGTGGGCTGCTGGACTCCAGATGCAGTGCAGTGGCTAAGAGACACAGCTCTCCATTGCAGTGACTGCAGCTTGAAGATTGTTAAAGTGGAGGAGAGCAAGCGCCTGGCCCATGTCTACCTGTTTACTAATAAGAACTTCCACGACCCTAGCCACAGCCTCAACCGCCAGCTTGCCAACTCGGATCTCTGGAAGCACCAGGACGATGTCTTCCTGAGCAGCCAAGGGTCTCTGAAGAGCCCTATTCAAACTATATCATCAGATACACCCCCCACAGCCTCTACCCCTACACCCACTACTGGCACCTCCAGCCCAAGCACCAACAGAGCAGGCAGGGCTCCACACCCACCTAAGAGGTTGGCACCCCATTTAGATTCCTGTAGCACACTGTCTGGGAGTCTGACTCTGCCACCTGTTCTTGAGCTCCCTCAAACAGGACAGAACATGGATATTTACGTGTCAGTCGCATGCCATCCAGGCCATTTTGTGCTCCAGCCATGGCAGGAGATGTACAAGCTGGTCGTCTTAATGGAAGAGATGATTCTGTACTACAACAAGACAGATGAGAAGCCACTCACAGTGGAAAAGAACCAGGTGTATGCCGCCAAAGTAGAGAACAATTGGCATCGAGTGCTTGTCAAAGGAGTTCTGAGCAATGGCCTGGTGTCTGTTTATGAGCTAGACTACGGTAAGCATGAGCTGGTTAGCTGCTCTGTGCTGAGGACCCTCATCCAGGAGTTCAGGCAGCTCCCTTTCCAGGGCATCACTGCTCAGCTGGCAGGAGTGAAGTCTAGGCAGTGGTCTGAAGAAGCTTCCATTGTATTCAGGAACCATGTGGAGAAAAAGCCAATGGTGGCGCAGGTGGAATCGGTGCAGGAGGCAGAACAGCCATGGGACCGCAAGCTCACTGTCTACCTGGTGGACACATCTCAGGAGGACAGTGACATCTGGGTCCATGACCTTATGGCTGAATTTACAGATGAGCTCACCAAAGCAGCATAACTGTTGGGTTATCTGTATGTGGTCTTGGAAGAATTTTGTGAGTGTGCATTCATGAGTTCTATCTGGAAATGCTGCTTGTATTTGACTTGAACCGGAAAGTGGAGATGCACTTAAGTTTTAGAGTTTATTACACTAAAAGATTATTTAATTACATCAAACATAGCTGTAAGGTGAATGATATACACTGCATTGCGTTGCCTGTAGAGCAGCTCTGCTCTTGCCTTTAAGCTTTAATTAATGTGAAGATTCATTGAAGCTTTGTCCAATAAGTGATCTATGGAAGAATCCAACAAGGAAAATGCACATGCATCAAACTTAAGATGTgatatttaaattgtatttaagaTACAATAAACaggtattcattca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77227 lncRNA downstream 10643 15989549 ~ 15991516 (-) True smim20
TU77256 lncRNA downstream 19886 15981736 ~ 15982273 (-) True G65267
TU77240 lncRNA downstream 41792 15906094 ~ 15960367 (-) True G65253
TU77249 lncRNA downstream 76998 15924454 ~ 15925161 (-) True G65260
TU76907 lncRNA downstream 800614 15201298 ~ 15201545 (-) True G64964
XR_003404045.2 lncRNA upstream 180416 16193092 ~ 16196596 (-) True LOC113540579
TU77434 lncRNA upstream 180416 16193092 ~ 16196466 (-) False LOC113540579
TU77449 lncRNA upstream 243275 16255951 ~ 16260298 (-) True G65416
TU77455 lncRNA upstream 250249 16262925 ~ 16264165 (-) True G65422
TU77456 lncRNA upstream 254560 16267236 ~ 16267546 (-) True G65423
XM_026936952.2 mRNA downstream 10174 15989862 ~ 15991985 (-) False smim20
XM_026936418.2 mRNA downstream 38191 15918848 ~ 15963968 (-) False rbpjb
XM_026936293.2 mRNA upstream 15503 16028179 ~ 16030916 (-) True LOC113540081
XM_026936292.2 mRNA upstream 15503 16028179 ~ 16030855 (-) False LOC113540081
XM_026936294.2 mRNA upstream 15503 16028179 ~ 16030854 (-) False LOC113540081
XM_026937123.2 mRNA upstream 41852 16054528 ~ 16071692 (-) True acox3
XM_026937226.2 mRNA upstream 61111 16073787 ~ 16085506 (-) True man2b2
XR_004577994.1 other downstream 10274 15973579 ~ 15991885 (-) False smim20
XR_004578098.1 other downstream 97804 15879471 ~ 15904355 (-) False tbc1d19
trnap-ugg_2 other downstream 126261 15875827 ~ 15875898 (-) True trnap-ugg_2
trnae-cuc_13 other downstream 1267432 14734656 ~ 14734727 (-) True trnae-cuc_13
TU76338 other downstream 1758478 14232809 ~ 14243681 (-) True G64436
XR_003404041.2 other upstream 42346 16055022 ~ 16071692 (-) False acox3
TU77497 other upstream 406634 16419310 ~ 16423164 (-) True tnfsf12
TU77801 other upstream 591432 16604108 ~ 16605717 (-) False bmp15
TU78232 other upstream 1387918 17400594 ~ 17402464 (-) True G66053
TU78241 other upstream 1426817 17439493 ~ 17444174 (-) False rnaseka

Expression Profile