RNA id: XM_026936553.2


Basic Information

Item Value
RNA id XM_026936553.2
length 4505
RNA type mRNA
GC content 0.52
exon number 19
gene id epha4a
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 30781158 ~ 30845103 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCAGTGGTGCAGAGATGGCGGTTCTTCTGGTATTCCAGGACGCGGTGAGACTTTGGCGCGAGGTGATTGGCTGCCTCAGGGTGACGGACAGCCCCGTAGGCCACGCCCCTTCGTGTTGTCGAGGAGCGCGCGCGCGGCGCTTTCGGCTCTTCACTCGCTGCTTGCGCGACTTCGGCGGCGCTCGAGAAACGGCGCAAATGGCAACGACCGCGTTCTCAGCCGCTTGGGCTCTCTTATTATGGATATCACACACAGCCTCGAGCGCGCGGGTTTATCCTCCAAATGAAGTGACTTTACTGGACTCGAGAACAGTGCAGGGTGAGCTGAAATGGGTTTCCAGTCCAACAGAAGGAGGGTGGGAAGAAGTAAGCATCATGGATGAGAAGAACACGCCCATCCGGACGTACCAAGTGTGCAATGTGATGGAACCTAACCAGAACAACTGGCTTCGGACAGACTGGATCGCACGTGGAGCGGCCCAGCGCATTTACGTTGAGATCAAGTTCACTCTGCGTGACTGCAACAGCTTGCCGGGCGTTATGGGCACATGCAAGGAGACGTTCAACCTCTACTACTACGAATCCAACAATGACAAAGAGCGATACATCCGCGAGAACCAGTTCATCAAGATTGACACAATCGCCGCTGATGAGAGCTTTACGCAGGTGGACATTGGAGACCGCATCATGAAGCTCAACACCGAGGTGCGGGATGTGGGCGTCTTGACACGCAAAGGCTTCTACTTGGCCTTCCAGGATGTGGGGGCGTGCATCGCCTTGGTGTCTGTGCGGATTTTTTACAAGAAGTGCCCTCTTACAGTACGCAACCTTGCTCAGTTTCCGGACACGACCACGGGTGCGGATACATCGTCGCTGGTGGAGGTCCGTGGCTCTTGCGTGGACAACTCAGAGGAGCGTGAAGTACCCAAGATGTATTGCGGTGCTGATGGAGAATGGCTGGTGCCAATCGGAAGCTGTCTGTGTAACCCAGGATTCGAGGAGCGAGCAGGAGCATGCCAAGcCTGTAAGATTGGCTACTACAGAGCTTTGGCCAGTGACGCCGGTTGCTCCAAATGTCCTCCTCACAGCTACTCGGTGCGCGAAGGCTCCACGTCATGCGCATGTGACAAAGGATACTTCCGATCCGAGACGGACCCCGCATCCATGCCCTGTACCCAGCCACCGTCCGCCCCGCAGCACCTCATCTCCAACGTCAACGAGACGTCGGTGAACCTGGAGTGGTCGGCGCCGGCGTTTTCAGGCGGAAGACAGGATCTCACTTACAACGTCGTGTGTAAACGGTGCGGGCCGGACGGACAGCGGTGCGAGCCGTGCGGCGTCGGCGTCCATTACACGCCGCAGCAGCTCAGCTTGCGGACCACACGCGTCTCCATCAACGAGCTGCAGGCGCACACGAACTACACCTTCCAGGTGTGGGCTGTCAACGGCGTGTCGCCGCAGAGCCCCGGGCCTGACCAGGCCGCCTCGGTCACCGTCACCACCAACCAGGCCGCTCCCTCTCCAGTTACGTCCATCCAGGCCAAGGACATCACCCGGCACGGCGTGTCGCTGGCATGGCAGCAGCCCGAGAGGCCCAACGGCGTCATCCTGGAGTACGAGGTCAAGTACTACGAGAAGGACCAGAACGAGCGCAGCTATCGCATCATGAAGACGTCGTCCCGCAGCGCTGACATTAAAGGCCTGAGTCCGCTCACCTCTTACGTTTTCCACGTACGAGCCCGCACCGCAGCCGGCTACGGAGAATTCAGCACTCCTTTCGAATTCATGACcaactcagTTCCTTCTCCTATTATCGGCGATGGTGCGAACTCCACGGTTCTTCTGGTCTCCGTTATCGGCAGCGTGGTTCTGCTGCTCATCTTCATCGCCGTCTTCGTCATCGGACGCAGGAGGAGTAAATACAGCAAAGCCAAGCAGGATTCAGATGAAGAGAAACACCTACACCCAGgGGTGCGGATCTATGTGGACCCTTTCACGTACGAGGACCCCAACCAGGCCGTGCGCGAATTCGCCAAAGAGATCGACGCCTCCTGCATTAAGATCGAAAAGGTCATCGGCATCGGTGAGTTCGGCGAAGTGTGTAGCGGGCGCTTGAAGATGCCGGGGAAACGAGAGATCTGCGTGGCCATCAAAACCCTCAAAGCCGGATACACGGAGAAGCAAAGACGCGATTTCCTGAGCGAGGCCAGCATCATGGGCCAGTTTGATCACCCCAACATCATCCGCCTCGAGGGAGTCGTCACTAAATgcAAACCTGTAATGATCATCACCGAGTACATGGAAAACGGCTCCCTGGATGCCTTCCTGAGGAAGAATGACGGCCGCTTCACGGTCATCCAGCTGGTCGGTATCCTACGAGGAATTGCGTCGGGAATGAAGTATCTCTCGGATATGAGCTACGTCCACCGTGACTTAGCCGCCAGGAACATTCTAGTCAACAGCAACCTGGTGTGTAAAGTGTCTGATTTCGGCATGTCTCGGGTCCTGGAGGAAGATCCAGATGCAGCTTATACAACACGAGAAATAATGGGAACCTATCAATCACAGGGTGGGAAAATCCCCATTCGCTGGACAGCACCAGAGGCCATCGCGTACAGGAAGTTCACTTCAGCCAGTGACGTGTGGAGCTACGGGATCGTCATGTGGGAGGTGATGTCGTACGGCGAGCGGCCATATTGGGACATGAGCAACCAGGATgtcaTAAAAGCCATTGAAGAGGGATACAGGCTTCCCCCGCCAATGGATTGTCCCATTTCTCTACACCAGCTGATGCTGGACTGCTGGCAAAAAGAACGAGCTGAGAGACCCAAATTTAGCCAGATCGTCAATATGTTGGACAAATTAATCCGTAATCCCAATACGCTAAAGAGGACTGGAGGAGAAATAGCAAGaCCCAACACCACCCTTCTAGAGCCTAGCAGTCCAGAATTCTCCTCTCCCCTGGGCACCGTGTCTGACTGGCTAACGGCCATCAACATGGAGCGTTACCGTGACAACTTCACCGCCGCCGGCTACACCACCCCAGAGGCGGTAGTGCACATGACGCAAGAAGACATGACAAGGATAGGCATCTCGTCAGCCGCGCACCAGGACAAGATCCTCAGCAGCGCGCAGGGAATGCTGTCCCAGATGCAGCAGATACAGGACAGGATGGTTCCAGTCTGATCGGAAACTCTTAcaacacacttttttccccctcctcttgtttttgttttgattttagacagaaaaaaaaaacaactccatTTTTACCTCATCCTCATTTacgcactttaaaaaaattcgAATcgaagacaaaaaataaaaacaagaacaagGACGAACGGCTAacggcactttttttttccctggatCGCCTTTCGATCGGAGGATTCGTTCCCTTCCGTGGTGTTGTGAAACTACGTTCTTCACTCGTGCATTTTGCTACACGATGGAACTTTGAGGGCACGCTCTTTTTCCCCTTCACCTTGTTTTTTTTcgtatgtatgtaaatgtaaataagtagAACTTTTTGGATTCGTTCCACTTTGCCATTTCATCGTTCAGTCCACCTGGCGAGTTACAAACTGTGGctttaagataaaaaaagacattctgaagctctttattatttttttttcattctgggATTTCTGGCTCCATCTGAAGGCTTCTCCGCCCCTTTGAAATGGAATATCTGTCTCCACTTGGCTGGCAACTCATGCGCACCGATGGATTAGAGAACACTGCTCTGAGTTGAGACCTCTCttgcctctttttctctccagctTGGTCTCtatgggtttttatttttctctctcaaccCCGGCAGGCTGTGAAATTCCCACTCGCTGGAGGCTGGATGGAATTAAGGGTCACATCGGCGTTTCTGCATCGTAGCGACATCCTTCACCACCTTAGCTAAAGCGTAAATTATTTACAACTCTTCCCAAGATTCATCTCGACGCAGAAAATCTTCCagaaacaaataataacaaGTTGAAAAGAGGTTATGGATAATTTGCACACCTCCCAAGAGCTTTGTTTTGTCTGCATTTCTACATATGCTAGCAACTGAATGTATGCTAGCAACAGAACACGTGCTAGCTGCTTAGCTGGATGCGCTCTACagctttgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtttttctgtgaagGATGACTCTTGCTCTGAggaacacacaaaaacacacacttaaagaagaCATAAAGAGTACGCTAAGATAAAACAGAACCATTTgctagctgtgtttttttttaggggaGCCACGCTgtttttgatttctttattcACGAGGAAGTCACTGGAGTCTTTTGTTAAACGCTTCTGGAGTCATAAGCTGTCATGAATTCAGAAGATGCTAAGCTAAATTCAGACTCGGAGGATTAGCAGCTAGCGCTAACACTTCAGTTGTGGCTCTGGGAACTGGAATATGGACACGTGAACTTTAAACTTACTGcaggaatgtttaaaaaaaaa

Function

GO:

id name namespace
GO:0030517 negative regulation of axon extension biological_process
GO:0021654 rhombomere boundary formation biological_process
GO:0006468 protein phosphorylation biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0048013 ephrin receptor signaling pathway biological_process
GO:0009988 cell-cell recognition biological_process
GO:0048685 negative regulation of collateral sprouting of intact axon in response to injury biological_process
GO:0030900 forebrain development biological_process
GO:0005769 early endosome cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0005003 ephrin receptor activity molecular_function

KEGG:

id description
K05105 EPHA4, SEK, TYRO1; Eph receptor A4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87625 lncRNA upstream 8272 30772602 ~ 30772886 (+) True G73952
TU87604 lncRNA upstream 58356 30721031 ~ 30722802 (+) True G73935
TU87503 lncRNA upstream 187549 30593150 ~ 30593609 (+) True G73844
TU87504 lncRNA upstream 187549 30593234 ~ 30593609 (+) False G73844
TU87498 lncRNA upstream 299533 30481422 ~ 30481625 (+) True G73839
TU87694 lncRNA downstream 173008 31018111 ~ 31018474 (+) True G74011
TU87688 lncRNA downstream 185285 31030388 ~ 31031370 (+) True G74006
TU87857 lncRNA downstream 401987 31247090 ~ 31250757 (+) True G74158
TU87899 lncRNA downstream 510451 31355554 ~ 31356121 (+) True G74199
XR_004578070.1 lncRNA downstream 679000 31524103 ~ 31531196 (+) True LOC117597166
XM_034303971.1 mRNA upstream 302865 30454757 ~ 30478293 (+) True uggt1
XM_026937167.2 mRNA upstream 333526 30338870 ~ 30447632 (+) True hs6st1a
XM_026937072.2 mRNA upstream 544118 30225043 ~ 30237040 (+) True otomp
XM_026936332.2 mRNA upstream 569183 30205198 ~ 30211975 (+) True d2hgdh
XM_026937319.2 mRNA upstream 577148 30199694 ~ 30204010 (+) True znf622
XM_026936633.2 mRNA downstream 160320 31005423 ~ 31028876 (+) True slc25a36a
XM_026936134.2 mRNA downstream 216634 31061737 ~ 31097929 (+) True spsb4a
XM_026937114.2 mRNA downstream 285004 31130107 ~ 31212333 (+) False clstn2
XM_026937113.2 mRNA downstream 288166 31133269 ~ 31212333 (+) False clstn2
XM_034304124.1 mRNA downstream 312264 31157367 ~ 31212333 (+) True clstn2
TU87615 other upstream 14026 30746131 ~ 30767132 (+) True G73944
TU87616 other upstream 14026 30746131 ~ 30767132 (+) False G73944
TU86682 other upstream 1158121 29619993 ~ 29623037 (+) False asip2b
TU86406 other upstream 1869054 28874356 ~ 28912104 (+) True G72873
trnat-ugu_8 other upstream 3159775 27621311 ~ 27621383 (+) True trnat-ugu_8
TU87706 other downstream 216627 31061730 ~ 31097888 (+) False spsb4a
TU87898 other downstream 506158 31351261 ~ 31353144 (+) False c4h22orf39
XR_004578111.1 other downstream 924719 31769822 ~ 31776798 (+) True LOC113540067
LOC117597174 other downstream 1100945 31946048 ~ 31946542 (+) True LOC117597174
LOC117597173 other downstream 1113919 31959022 ~ 31959667 (+) True LOC117597173

Expression Profile