RNA id: XM_026936559.2


Basic Information

Item Value
RNA id XM_026936559.2
length 5631
RNA type mRNA
GC content 0.42
exon number 15
gene id smarcd3b
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22190686 ~ 22239624 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gcacacacacacacacacacacacacacacggagtcacTCAGTCAGTACACATTACCATTCGCCGCAGTCAGTTTTCGCCACAGCCATCACTGCCATGGAGAGGAAGCGTCCCGGTATGCCATCAGGACCACGGATGCCCCATCAGGGGGCACCAATGGGTCCTCCAGGCCCACCGTATGGAGGAAACTCCGCTGTTCGGCCTGGGCTCACCAATCCGGCAATGGAGGCCAACCGCAAACGGCCCGCCCCCTCACAACAACACatccaacagcagcagcagcaacagcaacagcagcaacagcagcaagcggtacagaacagaaacagaaaGAAGCCGGTGGGAATTCCTGGAGCCAGTGAGATGCCAGGGAGGCAGATGGACATGAGAGAGGCCCAATCAGATCCCACACTCGGATCAAACACCAAGAGGAGGAAAATGGCTGATAAGATTCTTCCACAAAGGATTCGTGAGTTAGTCCCAGAGTCCCAGGCTTATATGGACCTGCTGGCCTTTGAGCGCAAACTGGACCAAACTATAATGCGCAAGCGGGTGGACATCCAAGAAGCACTAAAACGACCCATGAAGCAAAAGCGCAAACTGCGACTCTACATCTCTAACACCTTCAACCCAGCCAAGCCTGACGCAGAGGACTCAGATGGCAGCATTGCATCCTGGGAGCTACGGGTGGAGGGAAAGTTACTTGATGATCCaggaaaagtgaaaaggaagtTTTCATCCTTCTTTAAGAGCCTGGTGATTGAGCTGGACAAAGATCTGTACGGACCAGACAACCATCTAGTGGAGctgcTGAGCAGTGGGGCTCAGTGGCATCGCACTCCCACCACTCAGGAGACTGATGGCTTCCAGGTGAAAAGGCCAGGCGATGTCAATGTACGCTGCACTCTGCTGTTAATGCTGGATTATCAGCCTCCTCAGTTTAAGTTGGATCCACGGCTCGCTCGGCTGTTGGGTATCCACACTCAGACACGCTCGTGTATCATCCAGGCCCTGTGGCAGTACATCAAAACCAACAAGCTGCAAGACTCCCATGACAAAGAGTATATCAACTGTGATAAATACTTTCAGCAGATTTTTGACTGCCCTCGGCTGAAGTTCTCCGAGATCCCTCAGCGCCTGACTAACCTGCTGCTTCCCCCTGACCCCATCGTCATAAACCACGTCATCAGTGTGGACCCAAACGATCAGAAGAAAACAGCCTGCTACGATATAGATGTCGAAGTGGAGGATCCACTCAAAGCCCAAATGAGCAACTTCCTGCTCTCGACAGCCAATCAGCAGGAGATCGCCTCTCTTGACAACAAAATCCATGAAACTATTGAGTCCATTAACCAGCTGAAGATTCAGAGAGACTTCATGCTCAGTTTCTCCCGAGATCCCAAAGGTTACATCCAGGACTGGCTGAAATCCCAGAGCAGAGATCTCAAAcTAATGACGGACGTCGTTGGGAATcctgaggaggagaggagggcgGAGTTTTACTACCAGCCCTGGTCTCAGGAGGCAATCAGTCGCTACTTCTACTGCAAGATTCAGCAGAGAAGACAGGAGCTGGAACAAGCCTTGGCTATGAGGAATACCTAGACCAAACCCAGACACCAGCTCACACTCTGACAACACTTCTACAGTCTGAGCCACACGAATGTCCTCATTATTGCCACATTGTTTtctacagtgagtgtgtgtgggtgggtgtgtgtctcCTTGTGTTTTAGTTGTCACTGTGACCCAAGGCCCAATTACACACAGCCATTCCCGAGGACCCCTTCAGTTTCTGTCTCCGCCAATCAAGGTGCTCTGCCTCATATGTTTTACATCAAGACATCAAGTCACAAACCCAGTTGCCATATTCTTGATCCTTAATGCTGATCTTTAAATGTGACGCAAGTGTCGTGTACCTCAGAGATGAAACACCAGTTTCACAAGTGGAATCGTCGTGTTTAGGCCAACAAAATTCCTTTTAATACACGAAATTCTTTTTAATGGTTTCAGTAGTTTATCAGTATTATTGCTTTGAAAGTTTTTGTGAAAATATGTCATATTTAGTTGGTTCCCTCTCCATGTAAAGAGTTCTTCAGTAAGCTGCTGCTTAATAGAGTGTACTTCTTATACATGTACAAATTGTAAAACTACCTATATTAGAATTGTGTACCCACCTTTACTACAAATTATAGCCAATCGTAATTATTTTGTATGTTGTGTAATTAAGAAGGTATGAAGTGGATGTGTAACTACAGGGATGGACAAATCgagaatttatatataatagCCAGTCCACCAAGGCTCCAGAAACCTAATTGACTAGGTCAAAAGTAGTAGCATATATGTTACatgaaataatgtaataatataaggcaagctagttagctagttaagttcattattatcctcttctaacaaattttctaatgtagcacaacATGTTTGTGCCCTCAACCAAAGGGCCAACTTCCACTATGAGATGTGGTGTTTTCTCATCGTAtcgcaagaagaaaaaaaaaaaaagatataactCACGTCTGGTTagagtctttattttctctatatatgtTACACAGTGAGTTGACTGCGTGTAGTAAATGTACTACAGGCATTATGATTCGTAAGTAGCGCTATAGTTGCAGCATCAAAGTACGTCGCACCACCATGaagtgcattttgttttatgaAAGTCAGTCAGAATTACTGCCAGGCAGCTACGAATGAAAAACTACTCATTTGTCCATCCCTGAACTACATTTGTAGCTACTAGTTCCCAAATTCAGGACTCGAATCCATGGCTAAATACACAGTACCGACTGCACAGTATTTGGAGTTTCACACCATTCTTCACTAGAGTTAACCTTTACACTAATCACTACATTAATAACATACAGCGTTTCTTGGTAAGTATGTACAGTAAGTCTGATGTAGGTAGTTAATGTGTAACAGTTTGTACATATGTAAGAATTACTCGATACTAAACACTAAAGACACAATATAAAGTGGAGTCTTTTTGTTTGATCAGTATTTATAATGTGTGGAGCCCATAAAGTATGAAATGACATTGTGTAATATGTGACCTGCTCCATCATTCTgatttttatacttttctaaAGAGGAAAGTCGCAACATTTCAGAGATATGAGGTTTAGGATATGCTCACTTAGGTTGATTGTAATCAAGTCTTGTTGGTGgataatttttattttccaatcaACTGCAATGTTTATTCAGCCATAAAGTAACATTAACCCCCCCAACTTGTTCATTCAAGGTTCTCCAAACTAAACAGAAGGGGAAAGATGGAGAGCAATGTAATGTGTAGCTGATTAGCTTTTATAGCTTTTTCTCAGAAGTAGTAAATGCCTCATTATAATGTTCAAAAGCTTCCCATCTATATTTGTTGTATTGACATTTACACAGTCAGAAAGCAGAGACTTTATTTAAAtcacaaccaaaaaaaaccccaaaaacagaCCAGAAGTGAGTTTATAGAAGCATATGGTTTCTACACAAATAGCCAATTGCGACTTCCGACTCAAAACGATGTGGAACATGTCACATATGATAAAGATGGTAGTGATTATGATCAAGTTCTCAGAAACAAACCATCCATCCAGGTTTTACTAGAGTGAAGTATATATGAAGTATAATGATCTAAGCTGCTGGCCAGCAGTCCATGTGTGAAAATCTGCTTTCTCCAGCTAAATACTTGCATATGACTGAAGTTCATTAAACAACAACTCATACTTGAAGTATTTAAATTGGAAGTATTTTAAAACACCTTGTTTTGTGAGGTCTTTAACCCACGATGAAGGTTGTGTGAAAAGAATGAAGTCCAGTATGAAGTGCAGtcaattctttaaaaaaaaggaatttgacACTTTTGCTTATATGCTTTATTAACTAGACCACAGGTCAGGATTGTATAAATACTGACACATGATTTTATTGATATCTTTGAGATAATCTCAGTGGGTCCAAATCCTGTGTTTACTGCACATGGAAGTGTGAACAGTACTGACATCATATTCTGTCTGTTTCATGGCTTTCATGTTGGATTTCTACCAGCGGTCTCAACAGCTTAGGTTTAAggtatttattatgtaatttcACAATGAAGGGCACTGACTGAATGCTGTAGAAACTGGTAAATATTATGTTTAgtttgtagtttaaaaaaaaaaacacctcagtaGAGTACCACAACTTTTCAAACTTTTGCACTAAGTTGTTTATCATGAGTTGGTCATTAAATATTGTTCACTTGAAACGAGGGAATGAAATGAAGGAAAAGTTGACCTGTGCTCATTTTGTTAGTTGATATGTTGTGTACTGTATCACTGGTGTAATATTGTCCTCGCTCCCcagtggctgtgtgtgttggttCTCAGCCCAGTTAGAGGGTAACAACCAGGTGTAAATGCCTGAGCTCTACACATCAAACATCTTCTCGTGGAAGGAGAGTTCACACTTTCTGCACAACCTCAGTCGGAATGATCGCTGAGGGACAGCATCCACTTTCTTAAAGCCTATGCATGCTGCATGGACAGATTTTTATACTTTCATACACGGACGTTTAACACTCTTTAGACTGAtggaggaaaccagaagaaCACCGACTCACAGAGAACTGGGTCAAAGCtacaaaaaaaggacaaaagatGACCATTTCTGGTcagctactgttttttttattttaaagtcttCTGTATTGCTGTTGTCTTGTCTTTATAAAAGACTTAGTGATTTTAGTATGGAAAAAAAGTAGAAGCACACAACAGATTTCTACCAAGATGCATCCAGGTTCTGTGTAGTTCATCAAGACTAGGGCACCCCCTACTGAATCTCCTGAACACAGCATCCGCTTTATCACAGACATGCTACATGGTTCAGGTTCAACACCACTGTGGACCCTTAATTGCCCTGTATTTTCTGTTCGTCTCCTGATTTCTTCCTCACTAGCTGTCATCACTGACTCGCCTGGTGAAGTGATGGAGCCACTACAGAGTATAGAGTCCAAAAATCTgtcactaatgttttttttttttaatcaattgtTATAAACAAATGCAACATATTCATGTGATACTTATTTACCACAGCGATGACACTGACATGATGGTAGGTGTTGCACTGCTAGGTTAAGACACCACCCAAAATATCCACCAAACTATGCGAAgaacaagtttttttaaaaactgatgaAATCTTTTGCGAGAATTTTAGAGCCTAATGCATGAGTATGCTTAAGGGTAGAAGTCTTTTACATCGGGTCACTCCTGCATGCAATACTTCGCTCACATCTGTGTTACAGGTCAACTTCCACCAGCTCTTGatgccagctgtggcctgtatTTTAAGTCTGATGTCAACACAGAGCAATTTGTATGCAGTGGATGCACATGATGTATTAACTGAGTGATTTTCTAGTCAATGTTAATGAACTTTGTGTACACATGCAGTAGGGTGAGTAGGGTGTTTTTGATGCTACACTATGATTTTGTTTCTCACTCATCCTGttctacatttttgttgttCCACtttcaacagagagaaagtaGTATGAGAATCACAAGTGtggatgtaaataaaaaagcgCTTGCCAAAGTTTGTAAAAGAAACCGGA

Function

GO:

id name namespace
GO:0055007 cardiac muscle cell differentiation biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0003007 heart morphogenesis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81502 lncRNA upstream 272910 21914806 ~ 21917776 (+) True G68687
TU81415 lncRNA upstream 428404 21754108 ~ 21762282 (+) False LOC113540377
TU81416 lncRNA upstream 428457 21754108 ~ 21762229 (+) False LOC113540377
TU81417 lncRNA upstream 441367 21732946 ~ 21749319 (+) True G68621
TU81294 lncRNA upstream 703198 21486974 ~ 21487488 (+) True G68523
TU81775 lncRNA downstream 4964 22244588 ~ 22244825 (+) True G68947
TU81789 lncRNA downstream 143470 22383094 ~ 22387745 (+) True G68955
TU81788 lncRNA downstream 153215 22392839 ~ 22397101 (+) True G68954
TU81842 lncRNA downstream 287704 22527328 ~ 22527556 (+) True G68999
TU82061 lncRNA downstream 410319 22649943 ~ 22652447 (+) False LOC113540463
XM_034304011.1 mRNA upstream 6001 22170332 ~ 22184685 (+) True nfx1
XM_034303946.1 mRNA upstream 27105 22045016 ~ 22163581 (+) False plxdc2
XM_026936701.2 mRNA upstream 27105 22045017 ~ 22163581 (+) True plxdc2
XM_026937183.2 mRNA upstream 155125 21974743 ~ 22035561 (+) True malrd1
XM_034304043.1 mRNA upstream 245098 21934492 ~ 21945588 (+) True arl8
XM_034303204.1 mRNA downstream 20368 22259992 ~ 22268392 (+) True abcf2b
XM_034303791.1 mRNA downstream 32851 22272475 ~ 22317291 (+) True prkdc
XM_026936958.2 mRNA downstream 89644 22329268 ~ 22338376 (+) True ncf2
XM_034303842.1 mRNA downstream 124058 22363682 ~ 22364458 (+) True LOC117597114
XM_034303926.1 mRNA downstream 128106 22367730 ~ 22382067 (+) True kif9
XR_004578015.1 other upstream 428385 21752416 ~ 21762301 (+) False LOC113540377
TU82445 other downstream 1078880 23318504 ~ 23320343 (+) True G69509
TU83028 other downstream 1869171 24108795 ~ 24109889 (+) True G69971
XR_003403979.2 other downstream 2619402 24859026 ~ 24871263 (+) False kif2c
XR_003404013.2 other downstream 3468203 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 3658511 25898135 ~ 25901843 (+) False LOC113539772

Expression Profile