RNA id: XM_026936560.2


Basic Information

Item Value
RNA id XM_026936560.2
length 2045
RNA type mRNA
GC content 0.46
exon number 11
gene id hdac8
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13533817 ~ 13553948 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttattttgaagtCCTGTAGCACTACCTACCGGAAGTCGGTGATATTGGTGGTATTGGATTTAAACCCCTCAAGATAGCGCCtgagttatttttctttttgaatcCTGACTTCACTAGTTTTGAGGGTGAGGTGTTAAATGTGCGACAGCGGCGACTCTAAGGATGGGAAACCCACCAAACGCAGCGTGGTGTATATTTACAGCCCGGACTATGTGGAGACCTGCGACTCTCTATCAAAAGTCCCAAACCGAGCGAGTATGGTGCATTCTCTGATTGAAGCTTATGGCTTATTAAATCAtatgagTGTGGTTAAGCCTCATGTGGCTACGATGGAGGAGATGGCAGTGTTTCATACACACTCTTACCTCGAGCATCTGCACAAGATCAGCCAGAATGGAGACAATGATGATCCCCAGTCTGTGGATTTTGGGCTGGGGTATGATTGTCCAGTGGTGGAGGGCATATTTGAGTACGCGGCTGCAGTTGGTGGAGCCACTCTGACGGCCGCCCAGTGTCTGCTGGATGGAAAGTGTGAAGTTGCCATCAATTGGGCAGGAGGCTGGCACCATGCCAAAAAggacgAGGCGTCAGGGTTCTGCTATGTGAACGATGCTGTTTTGGGGATCCTTAAACTGCGAGAGAAGTATGAGAGAGTGCTTTATATAGATGTGGACCTTCACCATGGTGACGGCGTAGAAGATGCCTTCAGCTTCACTTCCAAAGTGATGACTGTGTCTCTGCATAAGTTCTCTCCTGGCTTCTTCCCAGGTACAGGTGATGTGTCCGACACAGGCCTTGGGAAGGGCAGGTGGTATGCTGTTAATGTGCCTCTGGAGGACGGAATCAGAGACGATCGCTACCTCCAGGTCTTCACCAGTGTCATACAGGAAGTGAAAGTGCTGTTTAACCCTGAAGCAGTAGTGATGCAGTTAGGGGCGGACACCATGGCTGGCGACCCCATGTGCTCCTTTAACATGACTCCAGTTGGGGTGAGCAAGTGCCTGAGCCATGTGCTGGAGTGGAAGTTACCTACACTGCTGCTGGGAGgaggtgggtATAACCTTGCCAATACTGCCCGCTGCTGGACCTATCTGACAGGGACAGTCCTGGAACAGACTCTATCCTCAGAGATACCAGACCACGAGTTCTTTACGGAATACGGTCCGGATTACACTCTGGAGATAAGCCCGAGCTGCCGACCCGATCGCAACGAGAGCCAGCAGTTGGAGCGGACCATCAGCACTATCAAAGGGAATCTGAAGAATGTCGTTTAAGCACTGGGCTCTAAGCTCATGTTTCCAAATCAGACTCTGCTCTCCTAATGAAGACAGTATGTGGGAGCCATCAACGGAGTGGAGTTTTGGAAAACATTACTCGAATGTTTCCGAAGAGCTTTGTTTAATGGGAAAATGAGCAGGCCAGTGTTGCCCCATGCGAGAAGTCTATAGTTAGAGTGAGTCACGAGGTGAAGAGTCCACAGGGTTttatcataattttaaaattccATTGATATTTTGAATTGAAAAGCAAGACCTGACCTAGCCAATCCTATACACTTAGACTAAAACATGTCAAGAAAGAATTTTAATGGTGGTATTTGGTGCTTTTTCCGTCAGTGCGGTTTTTGTTTTGATAGCCATCGCTTGTTATCTTCATGGATCCTCTTCAGAAATGCTTTTCAAGTTGGAGTACAtgtttagtgtttgaatttgttGTCAAAGATAgtcacttgtttttattttctatgtatTCTTTTAAATGGTATGCCTCTCCGTGTTCCCTGGTGAAATGGAGTCAGTCATATAATGctgccaacacacactcatactctccaaaaacataacaaactgCTCCACCCAGGCatgctcacagaaactggaagATGGACAAAAAGGATAGAGGGATGAGAATGAAGAGTGTAGGTCAACGAAACTTAACTTGTTTGATGCTGTTGCCCCATTTAAGAATTTTTATTCTTCTAAAATCTGTGGATTTTAACATTGCAGTGTAAATATTGCTTTCTTAATAAAATCCTAaggataagt

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0016575 histone deacetylation biological_process
GO:0005977 glycogen metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0032041 NAD-dependent histone deacetylase activity (H3-K14 specific) molecular_function
GO:0005516 calmodulin binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0097372 NAD-dependent histone deacetylase activity (H3-K18 specific) molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function
GO:0046969 NAD-dependent histone deacetylase activity (H3-K9 specific) molecular_function
GO:0046970 NAD-dependent histone deacetylase activity (H4-K16 specific) molecular_function

KEGG:

id description
K11405 HDAC8; histone deacetylase 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75739 lncRNA upstream 29098 13504460 ~ 13504719 (+) True G63936
TU75682 lncRNA upstream 66091 13459362 ~ 13467726 (+) True G63898
TU75685 lncRNA upstream 116376 13417221 ~ 13417441 (+) True G63901
TU75666 lncRNA upstream 145863 13387598 ~ 13387954 (+) True G63889
TU75437 lncRNA upstream 247983 13284541 ~ 13285834 (+) False slc16a13
TU75791 lncRNA downstream 16054 13570002 ~ 13572833 (+) True G63976
TU75783 lncRNA downstream 141701 13695649 ~ 13748072 (+) False G63973
TU75785 lncRNA downstream 141701 13695649 ~ 13748072 (+) True G63973
TU75843 lncRNA downstream 201596 13755544 ~ 13759751 (+) True G64025
TU75876 lncRNA downstream 349493 13903441 ~ 13909459 (+) True G64049
XM_026936951.2 mRNA upstream 32984 13486536 ~ 13500833 (+) True si:dkey-33c9.6
XM_034303789.1 mRNA upstream 58780 13468552 ~ 13475037 (+) False LOC113539889
XM_026935990.2 mRNA upstream 58780 13468567 ~ 13475037 (+) True LOC113539889
XM_034303788.1 mRNA upstream 58780 13469819 ~ 13475037 (+) False LOC113539889
XM_026937015.2 mRNA upstream 82994 13443794 ~ 13450823 (+) True LOC113540489
XM_026936564.2 mRNA downstream 4675 13558623 ~ 13561537 (+) False cited1
XM_026936565.2 mRNA downstream 5367 13559315 ~ 13561537 (+) False cited1
XM_026937097.2 mRNA downstream 10780 13564728 ~ 13569599 (+) True rps4x
XM_026936255.2 mRNA downstream 19686 13573634 ~ 13645984 (+) True nhsl2
XM_026936257.2 mRNA downstream 19687 13573635 ~ 13645984 (+) False nhsl2
TU75730 other upstream 58780 13470769 ~ 13475037 (+) False LOC113539889
TU75687 other upstream 115121 13418377 ~ 13418696 (+) True G63903
TU74787 other upstream 1238694 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_003403980.2 other upstream 1836522 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU73719 other upstream 2870410 10657357 ~ 10663407 (+) True c4h4orf48
XR_003404009.2 other downstream 4675 13558623 ~ 13562266 (+) True cited1
XR_004577999.1 other downstream 151628 13705576 ~ 13719454 (+) False gc2
XR_004578085.1 other downstream 701796 14255744 ~ 14269340 (+) False brms1
XR_004578093.1 other downstream 1078082 14632030 ~ 14658936 (+) False zgc:194930
XR_003403994.2 other downstream 2469247 16023195 ~ 16039984 (+) False LOC113540079

Expression Profile