RNA id: XR_003404009.2


Basic Information

Item Value
RNA id XR_003404009.2
length 1867
RNA type misc_RNA
GC content 0.43
exon number 3
gene id cited1
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13558623 ~ 13562266 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTGCCTTTGATTGAGGAGCTGGACTCACTGATCGTGCTGAGGGAAGAGAGACAAGTCTTCAGCAGTGTATAGACCGAGCTTTGCATCTTTCACAGGAACTTGtcaatgcatgtttttttttctcatttatttatcctGCAGATATTTAGTCATTTTGTGACCAGCAGCCAGCCTTGGATCCGGTGTGGTACTGAACCCACTGCTGACTTTCTCAAAGGTGTCACCGGGTAATGAGCTTACTGCTGCTCTCCAGCTCAAGCATGAAGGACCGTGACTCTCTGACCCTCCTGCACTACACAAACTCTGGCAAAACTGGCCCACAGTACCCCCCTCCCAATCTACACTCTTCCTCCCCAGGCCTCACCAAGTCCCAGCCCTTCTGTCTGCAGTCCAGCCAGCACCTCATAGCCTCCATGCAGCTGCAGAAACTCAACAGTCACTATCAGAGCCTGACTGCCTCTACTACAGTCTCTTCTGGACCCAACAGAGGATTCGGCACTGCTTCAATGAGTCCAGCACAAATCCCTGGCCCTGGGATGGCTCAAGGGTCTGGCATCATAGATTCTGATCCAGTGGATGAGGACGTCCTGATGTCTCTGGTAGTGGAACTCGGTTTGGACAGGGCTAATGAACTTCCTGAGCTGTGGCTGGGCCAGAATGAGTTTGACTTCATATCAGATGTGCCTGCTGGGTGCTGACCCCCTATAGGAAAGTCCCCAATCACTTTTTGGCTGCCTCCTTTTTGCACCTGAGACACTGTTGGATAGCTCATGAAAatgtgagaattttttttttgaagactcTCTTCATGTGTAAAGACTTCAAGTTCAAGCTGCAGAGGTATAGGTGACCGTGTACTCTCACAATCAAAAGACTACTTGGACGACTCCAGCAGAGAGCCTCTCTTGAAACTAAAACTTGGTCATTCTCGCTATTCACACTGAGGTCTTGCTTGTTATAATCCTTTCCAAGCTCTGGTTTCAAAGTGGTGCAAGAATTTCTCACAAGTCACCAGACATGGAGTTAAGTCAAGTTTCACACATGGACTAGACCCCCAACACAAGCGCTAccagtgGTCATCTTCACCACCTGAAGTCGAAATTACAATAAAAGTTGTGAATCCACAATACATTTCTTCTGAAAGACGAGATATTCGTGTGGTCTCTAGTGGATAGGCTTCATCCATTGCCACCTGCCATCTGTGAGTTCTGTCCATACGAGCAGCCGGGTGGTGTATCTGTTCAGTAATGGAAGGTGATCCTGAAACCAGCATGGGCTAATCTTTTCCAAAATGCATGTCATCGCAAGACTCCTTTCCACTGGGGTAACCCGATCTATCAGACAGTTTTCCATGgttaaatatattaatgatgGACGTGTCCATTTCTTCCACTGGTAGCCTCACTTTAAGTCTAGAAAGATTGTGAACAGCAGCAGAAACTCGACAGATAATTCCACGCAAACTAAATAGTTTAGAATATGAACCCTATTACGAAAGCACTATATCTGTACATGTTTAATCAAgtgtctgtttttgtcttgtaTAAGAATAGAAAAATGTTAGGAACGATCTAAAAGACTCTACTGTCATGTCGTTGTTGTTTAGCATTGACTAATGTTGATAAAATAATGTGTTGAACCTGTGTTGATAAAATAATGGAGTAATTTCTTTATTTCGGTTTAACAGTCCTGAATGAATCATAAGTGgtgattgtgtattttttttttttttttgtttagcacTTTCCCTTCATCTTGTGTATTTTTCTACAAAAGATGTGATTACTGATATATTTAAATACGTGTACTCtgctattttgtttttcaaaatataagtaaataaaaagtacaGAATTCAAACCTTTA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K22527 CITED1; Cbp/p300-interacting transactivator 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75739 lncRNA upstream 53904 13504460 ~ 13504719 (+) True G63936
TU75682 lncRNA upstream 90897 13459362 ~ 13467726 (+) True G63898
TU75685 lncRNA upstream 141182 13417221 ~ 13417441 (+) True G63901
TU75666 lncRNA upstream 170669 13387598 ~ 13387954 (+) True G63889
TU75437 lncRNA upstream 272789 13284541 ~ 13285834 (+) False slc16a13
TU75791 lncRNA downstream 7736 13570002 ~ 13572833 (+) True G63976
TU75783 lncRNA downstream 133383 13695649 ~ 13748072 (+) False G63973
TU75785 lncRNA downstream 133383 13695649 ~ 13748072 (+) True G63973
TU75843 lncRNA downstream 193278 13755544 ~ 13759751 (+) True G64025
TU75876 lncRNA downstream 341175 13903441 ~ 13909459 (+) True G64049
XM_026936560.2 mRNA upstream 4675 13533817 ~ 13553948 (+) True hdac8
XM_026936562.2 mRNA upstream 4675 13534154 ~ 13553948 (+) False hdac8
XM_026936951.2 mRNA upstream 57790 13486536 ~ 13500833 (+) True si:dkey-33c9.6
XM_034303789.1 mRNA upstream 83586 13468552 ~ 13475037 (+) False LOC113539889
XM_026935990.2 mRNA upstream 83586 13468567 ~ 13475037 (+) True LOC113539889
XM_026937097.2 mRNA downstream 2462 13564728 ~ 13569599 (+) True rps4x
XM_026936255.2 mRNA downstream 11368 13573634 ~ 13645984 (+) True nhsl2
XM_026936257.2 mRNA downstream 11369 13573635 ~ 13645984 (+) False nhsl2
XM_026936258.2 mRNA downstream 21552 13583818 ~ 13645984 (+) False nhsl2
XM_026936259.2 mRNA downstream 48129 13610395 ~ 13645984 (+) False nhsl2
TU75730 other upstream 83586 13470769 ~ 13475037 (+) False LOC113539889
TU75687 other upstream 139927 13418377 ~ 13418696 (+) True G63903
TU74787 other upstream 1263500 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_003403980.2 other upstream 1861328 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU73719 other upstream 2895216 10657357 ~ 10663407 (+) True c4h4orf48
XR_004577999.1 other downstream 143310 13705576 ~ 13719454 (+) False gc2
XR_004578085.1 other downstream 693478 14255744 ~ 14269340 (+) False brms1
XR_004578093.1 other downstream 1069764 14632030 ~ 14658936 (+) False zgc:194930
XR_003403994.2 other downstream 2460929 16023195 ~ 16039984 (+) False LOC113540079
XR_004578074.1 other downstream 2747947 16310213 ~ 16319166 (+) False LOC113539780

Expression Profile