RNA id: XM_026936566.2


Basic Information

Item Value
RNA id XM_026936566.2
length 2346
RNA type mRNA
GC content 0.47
exon number 11
gene id trmt44
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 19354380 ~ 19372755 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACGAGCTGGGTTTGAACAAGGACTTTTACTTTGAAACGCGTCGTTGCTGCTAGCTAGCATAACTGTAAACATGAGGTACTGTAACTAGCAGCAGGTAACGTGACTTTTTAAGGCTGGAAGTAAGTAATGTTGTGCTCGTGGACACTTGTGTGTAGATAAAACTGTCTGAGATGAGGCCCGAAGGCTTCTGGTCTGCGGTTGATGTGTGGATAAAGAAGCCTCATGTGGTGAATAAGCGGCTGTGCGGAGCGACAGAGACGGAATACAGAGCTGTGAGCTGTGAGGAGCTCGAGCTCTGTCTCTGCAGCTTCCTCAGCATCAGTCAGCGGGATTTAGCAGAAATCGTCCCTTTCCTGCACGCGCACACAGCGGCCACGAGCCACCAGACTGTACCAACCTGGAGTGTAGGAGGGAGAACCATCATCCCTAAAGCAGGGCTACAGAGCAATGGAGCAAAGCTGTACAAGGAGATTATTGTCAAAGATTTGAATGGACAAACAGTGACATTTCTGCCAACTGAAGAAAACAGTGAAGGCCACATCATTCTGAGGGAAAGTAATATTTATCAGATCCAGCTTCAGGAAAAGACAGATGATTGGATATTGTCTCTTCATGCCCTGAGACCTGATCAGTGGTATAGTGATGGCGTGGCCTACCCCAAACTCACCTGGCTGACATCGGAGCTTCTTCCTAAACTAGCACGCTGGGCCACAGAGAGCAAAGCCACAGAGTTCAAGAGTACTCTGTCTCTCATTCCTGTCGAGAAGTACAGCATACTCTACCAGCagctgaaaaacaaatacaaagagATTGTCAAGGTCTGGCCTGAAGTAACTGATCCTGAGAAATTTGTCTTTGAAGATGTTGCCATTGCTACATATCTTCTTGTTTTATGGGGTGAAGAGCGAGCTGAAAAAGGAATAACATCCAAACAGTCTTTTGTGGACCTCGGCTGTGGAAATGGCCTGCTTGTCCACATATTAAACAATGAAGGGCATCCTGGAAAGGGAATTGACATTCGCAAGCGAAAGATCTGGGACATGTATGGACCCAATACACACTTAGAGGAAAAGGCAATCACGCCCAGCGCTGCGTTCCTCTTCCCTGAGACGGACTGGCTGATTGGAAACCACTCAGATGAGCTCACGCCATGGATCCCCGTTATAGCAGCCAGATCATCGTACTATTGCCGCTACTTTGTGCTCCCTTGCTGCTTCTTTGACTTCTGTGGGAAGTACCAGCGCCGACAGTGTAAGAAGTCTCAGTACAGGGAGTATGTAGACTTCATCAACGAGGTCAGCGTAGCATGTGGCTTTCAAACAGATGAAGACTGTCTGAGGATTCCCTCCACTAAGCGGGTCTGCCTAATTGGGAAGAGTAGGAGTTATGAGCAGGCTGAGGAAGAGTTAGCAGAAGTGAAAAGAACAGATTACATTAGGGGACGGCAGGCCTTAACTGACAACTCGACAGTTGTTAGTCAGAAAGAGCACAGTGGACCTCATCATCATGGAGATGGACAGGAGATGGCCAAAGCAGGATGTGACTGGGGAAACGGCTTTCAGCCGAGGGAGAAGATCGAGACAGTCAGAAACTGTGCAGCTCTCCCTAGAGACTTTGTAGATGGTGTCGTCCTGAAGGTGGCGATGGCCTTGTTGGGACTCactggagagaaaagagaggaggaggaagaggacaaGATTGGAAAGCAGAGAATTAGGTGGAATGCAGGAGGCTCTCTGTCCGTCCGTGAGGTAGCTGAGCTCCTGGACCAGTCAACATTGCAGACACTGAAGAAAGAATGCGGAGGACTACAGACTCTGCTGAAAAACAACCATCAAGTGTTCCGAGTGGAAGGTGGAAAGGTTCACATTCGTGACTGGCGCACTCAGGGCACCCAGACTGACCCGAAGCGCAAATCCCAAATCTCAGGAGCACTAAAAACCCGACTCTGCTGGTTCCACACTCACCACCCTGATGGATGTCCACTGTCCAGCAATGACTGCGTTTTTGCCCATGGGGCTGATGACCTCCGACCCTCCACACGCCCCCTGAAAAAACACAGGAGCTGATCATGATCGATGCTAAGAActtttgtatgtttatatttgaaTTGAAACTCCATGAAGACTCACATTGATTTTgtttataacatttacattaaaggAGAATTCAGAGGTATTTTGGGCTTCGAAAATTTGTCTTGTCGGAGTGTGTGTAAGTTATCGATAATGCCTTGGCTTcttatttgttttctgttgtttgtaTAGCAACAGATCAAACTGAAATTCTCCTTGCAAGTATTCTGGGATTACCAATAAACACACGAACTCAATAAGGACCACACAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process

KEGG:

id description
K15447 TRM44, METTL19; tRNASer (uridine44-2'-O)-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79640 lncRNA upstream 2476 19345844 ~ 19351904 (+) True G67205
TU79644 lncRNA upstream 2476 19345844 ~ 19351904 (+) False G67205
TU79518 lncRNA upstream 231756 19120859 ~ 19122624 (+) True LOC113540244
XR_003404012.2 lncRNA upstream 232360 19120838 ~ 19122020 (+) False LOC113540244
TU79287 lncRNA upstream 442983 18911057 ~ 18911397 (+) True G66887
TU79647 lncRNA downstream 801 19373556 ~ 19375720 (+) True G67208
TU79649 lncRNA downstream 9798 19382553 ~ 19451392 (+) True G67209
TU79674 lncRNA downstream 101740 19474495 ~ 19475474 (+) True G67227
TU79687 lncRNA downstream 126454 19499209 ~ 19501228 (+) True G67236
TU79722 lncRNA downstream 171291 19544046 ~ 19641619 (+) True G67262
XM_026937227.2 mRNA upstream 15673 19328031 ~ 19338707 (+) True etnppl
XM_034303737.1 mRNA upstream 27003 19170699 ~ 19327377 (+) False LOC113540597
XM_026937175.2 mRNA upstream 27003 19170699 ~ 19327377 (+) True LOC113540597
XM_026937171.2 mRNA upstream 27003 19170699 ~ 19327377 (+) False LOC113540597
XM_034303739.1 mRNA upstream 27003 19170699 ~ 19327377 (+) False LOC113540597
XM_026937115.2 mRNA downstream 15850 19388605 ~ 19393118 (+) True gpr78b
XM_034303203.1 mRNA downstream 21400 19394155 ~ 19405210 (+) False LOC113540663
XM_026937261.2 mRNA downstream 21405 19394160 ~ 19407627 (+) True LOC113540663
XM_034303433.1 mRNA downstream 82271 19455026 ~ 19470962 (+) True LOC113540575
XM_026936525.2 mRNA downstream 108300 19481055 ~ 19485146 (+) True LOC113540207
TU79253 other upstream 495728 18856456 ~ 18858652 (+) True G66864
TU78855 other upstream 1145816 18197312 ~ 18208564 (+) True G66492
XR_004577948.1 other upstream 1223875 18113444 ~ 18130505 (+) False frem1a
XR_003403977.2 other upstream 1343418 18000158 ~ 18010962 (+) False ctdnep1b
trnat-agu other upstream 1589846 17764461 ~ 17764534 (+) True trnat-agu
trnah-gug_4 other downstream 455556 19828311 ~ 19828382 (+) True trnah-gug_4
trnah-gug_5 other downstream 456064 19828819 ~ 19828890 (+) True trnah-gug_5
trnar-ucu_2 other downstream 728270 20101025 ~ 20101098 (+) True trnar-ucu_2
TU80337 other downstream 775040 20147795 ~ 20154771 (+) False fcer1g
trnaa-cgc other downstream 979659 20352414 ~ 20352485 (+) True trnaa-cgc

Expression Profile