RNA id: XM_034303288.1


Basic Information

Item Value
RNA id XM_034303288.1
length 1933
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC113540233
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28602905 ~ 28611157 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACCAAAGTGTGGAAGGAAGTTCAGACCAAAGTGTGGAAGGAAGTTCAGATCAAAGTGTGGAAGGAAGTTCAGACCGAAGTGTGGAAGGAAGTTCAGACCGAAGTGTGGAAGGAAGTTCACACCAAAGTGTGGAAGGAAGTTCAGACCGAAGTGTGGAAGGAAGTTCACACCAAAGTGTGGAAGGAAGTTCAGACCGAAGTGTGGAAGGAAGTTCAGACCGAAGTGTGGAAGGAAGTTCAGACCGAAGTGTGGAAGGAAGTTCAGATCAAAGTGTGGAAGGAAGTTCAGATCAAAGTGTGGAAGGAAGTTCAGATCAAAGTGTGGAAGGAAGTTCAGACCAAAGTGTGGAAGGAAGTTCAGATCAAAGTGTGGAAGGAAGTTCAGACCAAAGTGTGGAAGGAAGTTCAGACCAAAGTGTGGAAGGAAGTTCAGACCAAAGTGTGGAAGGAAGTTCAGACCAAAGTGTGGAAGGAAGTTCAGATCAAAGTGTGGAAGGAAGTTCAGACCAAAGTGTGGAAGGAAGTTCAAAAGCTTGGGAGAAACGTTCAGAAGGAAGTTTAGACAGAAGTTTGGAAGGAAATTCGGAAGCTTGGAGGGAGGCATGCAGTATTCCCAGCAATCTACTGACGTGatcatcagctgctgtttacAATGATAACTCCTTCCAGAAAAGCATCCATCCCACTGCGCCATGTCAAGCAACGTTCTAATGAAGAAACTGCAGCTGGGTTTAAGCACAGTTCAACCCAACATGCTGATTATCGCTCAGTTAGTTTTGCTGCTCTGCGCATGCTGCGCTCAAACGCAGGATTTCATGACGCCCAACGTGAACATCCTTAATGAaattggaaaaataaagaacctggaggaaagaCTGAAAACAGCAGAGGACAAGATGCAGAGCCAAACCACCTTGGTGAATGAGCTGACCTCCAAACTGAAGGAGCTGGGGagtgaaaatggagtGCTGAATATGACAGTCCAAACCTTGCAGGATGAAGTTGAAACTCTGCAGAAAGAAAACGAAGCCAGGAAGGTGGCCTTTTCAGCATCGCTTTTAGCTTCTGGAGAGGGAAACACCGGACCCTATAGTTCTGTGCCGCCCACATTAATCTACAAAAAAGTCGCCACTAACTTTGGAAATGGCTACGACTCAAATACGGGGATTTTCACAGCACCAGTGAAAGGAGTTTACTATTTCCGATTCTACGCTCACTGTCACGGCGGCATCAAAATGGCTGTCAGTCTGTATAAAAACGGAGCTGTTCAGTGCTCTGTGTTTTCCTGGAAGCCCATCACCAACGGCAACGCCAGCAACGGGATTGTCTTAACTCTAGAGAAAGGAGATCAGATCTTCACGAGGCTGTGGGAACAATCCTGGGTTTATGATGATCCAGCAGGCTACACCAGCTTCGGAGGCTTTTTACTTTTCCCCTTGTGAAATGGCGGCCTGTGATATTCCATTAATGAGCAGTTACTGGGATACGATACACAGAAATTTCTTTAATAAGTTCAGCTTTAAAATCCCAAAATTAGTTTTAGATTGATTGTCCACAATTACTCACAACCTCAAGGAATGTTGTTTGCAATTCATAACCCGACACTCGAGCAAATCACATGTGATAGTGAGTGAAACATCacagagaaacatttttttacactgatgtttattggtgtttttttgaaaaaaaaaaatcagaaaaaaaggcGCAAAGAAAAGCttgattttattaataaagctAATGAAGAATGTTTCTAAAACTTAAATGCAGTACCCAGTTTGGAAAAGAATTTATTGAGTAATTGTGGATagtaaaatatttgtgtttgtgtattaatGTGCAGACACGGATCATATCACAATCTGAAAACATGTCAAAGGTAATTTTTTGAAATGTTGGTAGTAAATAAAGGAATATATTTCTCATTGCA

Function

GO:

id name namespace
GO:0042742 defense response to bacterium biological_process
GO:0048514 blood vessel morphogenesis biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0043154 negative regulation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0045930 negative regulation of mitotic cell cycle biological_process
GO:0043027 cysteine-type endopeptidase inhibitor activity involved in apoptotic process molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85789 lncRNA upstream 23955 28574922 ~ 28578950 (+) True G72378
TU85742 lncRNA upstream 131140 28468948 ~ 28471765 (+) True G72336
TU85711 lncRNA upstream 219497 28302851 ~ 28383408 (+) False insig1
TU85733 lncRNA upstream 274724 28316404 ~ 28328181 (+) False htr5ab
TU85674 lncRNA upstream 480763 28114451 ~ 28122142 (+) True G72276
TU85820 lncRNA downstream 8667 28619824 ~ 28637201 (+) True G72404
TU85824 lncRNA downstream 12083 28623240 ~ 28627973 (+) True G72408
TU85843 lncRNA downstream 40257 28651414 ~ 28651621 (+) True G72422
TU85849 lncRNA downstream 47119 28658276 ~ 28658536 (+) True G72428
TU85891 lncRNA downstream 147398 28758555 ~ 28761451 (+) False gng5
XM_026936568.2 mRNA upstream 14286 28558278 ~ 28588619 (+) True rnf32
XM_034303286.1 mRNA upstream 22281 28558278 ~ 28580624 (+) False rnf32
XM_034303603.1 mRNA upstream 134053 28443778 ~ 28468852 (+) True rbm33a
XM_026936218.2 mRNA upstream 202764 28393936 ~ 28400141 (+) True en2a
XM_034303331.1 mRNA upstream 202764 28393936 ~ 28400141 (+) False en2a
XM_026936935.2 mRNA downstream 43599 28654756 ~ 28666631 (+) True slc1a7a
XM_026936875.2 mRNA downstream 79939 28691096 ~ 28699416 (+) True aldh9a1b
XM_026936340.2 mRNA downstream 105107 28716264 ~ 28722857 (+) True fzr1b
XM_026937211.2 mRNA downstream 127969 28739126 ~ 28745646 (+) False si:ch73-344o19.1
XM_026937212.2 mRNA downstream 127970 28739127 ~ 28745646 (+) True si:ch73-344o19.1
trnat-ugu_8 other upstream 981522 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 982228 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 1045003 27557765 ~ 27557902 (+) True LOC113540696
XR_003404069.1 other upstream 1046257 27556517 ~ 27556648 (+) True LOC113540695
trnat-ugu_5 other upstream 1113580 27489253 ~ 27489325 (+) True trnat-ugu_5
TU86406 other downstream 263199 28874356 ~ 28912104 (+) True G72873
TU86682 other downstream 1008836 29619993 ~ 29623037 (+) False asip2b
TU87615 other downstream 2134974 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 2134974 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 2450573 31061730 ~ 31097888 (+) False spsb4a

Expression Profile