RNA id: XM_026936583.2


Basic Information

Item Value
RNA id XM_026936583.2
length 6114
RNA type mRNA
GC content 0.50
exon number 42
gene id myo9b
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26465771 ~ 26502494 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGCTGTGAAAAAGCTAGGAAGTAAGATAGCAGTGTGGAGCTCCGAGTTTTGTGTGAACAAGGTTTAAACCTGCAGCTTACAGATTACAGAGGTGTTATTTCCTATCGCggatgtatttttttgtcattcgACCTCGCGCTTTGATTTTGTTTACAGGACAGGTGAGCTGCTGTGTTCTTCCGCTGACCAGGTTTTAGTGGAGGCGCTGAGGACGAAGGGCAAGTGGCTTTTAACGCGCGGTATAGATATGTGTCGTGATGGAATGACGGCAGATTAAAGCAGGTGCTGTGTGACATGTGGTGTGTTCTCGAGTGTCACGATGAGCATCTCAGAGAGCAAAAGCTCCACAGGCGTGTCCTACGTACTGAAGATTCATGTGAGTCCGTCCCTCAGTACACGTCCATCCTGCACAGTCAGGGTGCGAAAGGGCACCACGGCAGCCCTGGTGGTGCAGCGCATTGCTGAGCTACTTGAACTAGACTTATCCCGGCCGTACGAGCTGATGGAGGTGAGGGAACACTCAGGGGACAAACACATCCTCCGGATGGACGACTGTCCTGTGGACTGCCTGCTGCTTTGGCCTCAGGGACATGAGGAAAGTCAGGGTTATTATTTCACCTTTCAGGAGGGCAAACAGGACACATCAGGGCAGTATGGCACTGTGCAGGACTTTCTCACACCCCAGCGTAAAGATGTGAAGGATCTGTGCAGCCTCACTGTGCTTAACGAGGCCAGTATTCTAGAAACTCTACGCTGTCGGTTCTACAAGAACCAAATCTACACATACGCCAGTAACATCCTCATCGCCATTAATCCCTTCAAGTTCCTCCCCATCTACAACCCCAAATATCTGCAAAGGTACGAGAATTGCATTCTAGGGAAAGAAGATCCTCACATCTTCGCTATAGCGGATGCTGCATTCCATGCCATGCTGAACAAACAGACCAATCAGTGCATTGTCATCTCTGGAGAAAGTGGCTCGGGGAAAACGCAAAGCACCAACTTCCTCATCCACTGTCTGACTGCACTGAGCCGGAAGGGGTGCACCAGTGGTGTGGAGAGGACCATCTTAGGAGCTGGACCAGTACTTGAGGCATTCGGGAATGCAAAGACGACATATAACAACAACTCGAGTCGCTTTGGGAAGTTTATCCAGGTGAATTTCTTGGAAGGTGGAATCGTTAGAGGagctaCAATAGAGAAGTACCTGCTGGAGAAATGTCGTCTTGTCTCCAGGAAGAGCCGAGAAAGgaacTATCATGTGTTTTATTACCTGCTTGTCGGAGCGTCtcaggaagaaaaagaagagttCAAACTGTTAGAACCTGAAAATTATCACTACCTcaaacagGATCAggctgatgtggatgatgcagcGGAGATTCGATATGAGTTTAAGAGACTTCAGCAGGCAATGGAGATGGTTGGTTTCCTGCCTGCTACCAAGAAACAAATATTCTCTGTGCTTTCCGCTATTCTGTATCTGGGAAATGTGACATATGAGATGAGAGCAGATGGAGATGGAGTGACCGTGGGACCCGCACCCGTCCTCAAAACTCTGTCTGAACTGCTCAAGGTGAGAGAGGATCTGCTAATCAAGGCTCTGACTCAGAGGAAAGCTCAGACGGTGAACGACGTGCTCGTGCTGCGCTACAGCCTCAATGAGGCAATCACGGCGCGAGACTCGATGGCTAAATCTCTGTACAGCTCACTGTTTGACTGGATCGTCCTCCGCATCAACCACGCTCTCCTCAACAAGAGAGACATGGAGGAGGCTGTCCCGtgtctctCTATCGGTGTGTTGGACATTTTCGGGTTTGAGGATTTTACAACCAACAGCTTTGAGCAGTTCTGCATTAACTACGCTAACGAACAGTTACAGAATTACTTTAACCAGCACATCTTCCTCCTGGAGCAGGAGGAGTATGTTTCGGAGGGAATAAGCTGGACCTCAGTGAGCTACACAGATAATGTTGGCTGCATTaatctgatcagtcagaagccCATGGGTCTGTTGTACCTGCTGGACGAGGAGAGCAGTTTACCTCATGCGACTGACAACAGGCTGTTGGAGAAGTTTAAGCGGCAACATCAGGAGAACCCTTTCTTTGTTCCTACACCAGTTCTAGAGCCCGCCTTCGTCATCCAACACTACGCTGGCAACGTCAAATACCAAATAAAGGATTTCAGAGTGAAAAACACGGACCACATGAGGCCCGATATCGTCGCTCTCCTTCGCAGTAGTGAACGAGGCTATCTGAGACAGTTAATTGGCTTAGACCCAGTCGCAGTGTTCAGGTGGGGGATCCTCCGTGCCATCATACGCGCAGTGTACGCCATTAAAGGGGCGAGGCGACACTCGGCCACTGAACATCCAGCGACAGTAAGGCGATACTCACGTGACTCGCTGAAGGAAATGAAGAGACCGAGCTCCACCATTGGCCGACTAATGAGTCAGCGTTCTCTCATCGAGTTCTCCTTTGACCGTTCCGAGGAGAACCCTCTCGAAATGTTGGAGGACGTTTTTGCCACATTTGAGAATAAAAAGGAATTGCATGCCAAAATCCTCCACACTGTAATGCGATTAGGTGGTGAAGTTCCTCAAAAGTTTCGTCTCTCCACCGTTTCTGTGAGGAAATTACAACAGTTTTCTCTGAAGAGCCGGTCTGGTCGTCACAAACAGATCATTCCCAAGAACCTTTTAGACTGTCGCTGTCTGAAGCTCATCATGGATTTGAATCTTCACAACAGTGACACTCGCGCTTTACTCCACCTGcacaagaagaagaaacctCCCAGCATCAGTAGCCAgtaccagATGTCTCTGGTGAAGCTCTTGGAGACACTGAGGAGAGCTGAGCCATTCTTCGTACGCTGTATCAGGTCCAATACTGAGAAGagggAAATGCAATTTGATGATGATCTCGTCCTTCGGCAGCTGAGGTACACTGGCATGTTGGAGACGGTCCGCATTAAGAGATCAGGTTATGGAGCCAAGTACACTTTTAAGGAGTTCAGGGATGAATTCAGGATCCTGCTGCCAAGACAGTCGTCTTCTCTTCAGCAGGATATCAAGAACCTTCTGTTCAAAATCACAGTGGACAAGAACAACTTCCAGATTGGCAAGACCAAGGTATTTTTaaaggagatggagagacagaagcTCCAGGACACACTGCGTAAGGAAGTGATGCAGAGAATCCTCCTGCTGCAGCGCTGGTTTCGGGCATGTCTCACACGCAAACACTTCCTGATGAAGAAGAGAGCCATCATCACTGTACAGAGGTCATGGCGAGGTTATCAAGTGTCTACCCAGTGCAGAGCGGCCATGGTGATCCAGAAAGCCTGGAGAGAATCCCGTGAGAGAGCCGAGTATCTGCGCCAGAGAGAGAGCCTGAAGAACCTGCAGCAGCTGAAACAGAGCTCAGAGAACCGCAGGTGTCTGCAGGAGGAGCAAGTGAGTAGGGCAGAATGTGTTAAGGGCACTTCAGGAAGTGAGGATAGCAAGAATGAGACGGCGCTGCCACGCCCTGATGGTAAAATAAAGCCACTGCCACCAATACCGACCCAAACGTCAGCAGAGAACGAGCATGTGAAGAACCTCAGAAATGCGCACCAGCAGAACCGAGGCAGCGTCccggagcagagagagagacgagagaacgaggagacagacagagacacgtCGGTACTTGCAGCTCCGCTCCAACCTGACTCTCTCACTGATCCAAAATCAGATGACGGTCTCGGCATGTTGACACTGCAGCGCTCCAAACCAGCCAACATGAAGGAGAAAGTGGAGAAGTGGAGAGAGCGAAGGAGTGACATTGTGGTTTCAGACAGAACCCACCACGAGAACCACATGATTTGCAGTTTAAAGGCTCGAGGACTCTCAATGTCCCTGGATAATTTGTCCAAACTGAGCTCATCTGAATCGGACAGTACATCTCCATCCAACACTGAGGTGACGCTGCGTAGACGTAGGCGCTCAAGACACAAGCGCCGATTGGCTCACGCTCGCAGCGGCCTCATGCTGAAAGGCACAGAGGAGTGTGAGGATTACTGGATTTTCCCACTTCCTCCCTTCAGCCCGGAAAACTCGTTTCGGTCCAGTGCCCCTGTGGTGCTCGAGAAAACCCAGctgCCTGATGGATCAAAATTGAGTGTGATGCAGAGCCCAAGTGAAGCCATACACTCACAGCAATCCGCTCCAGAAAAaGGAGGATTTTTTGGTCGGTATTTCCCTCTGGGTAACAAGAAACGTCTCACTCCACAAGACGGAAATGTGACGATGGCCAGGACACTCGCTGAGAGAGAAGAGCACTTTAAGAGGTCGAACAGTAACTCCCCCACATCGGCATATCCATCCTCACTGGCCAAGCGTAAACGTCAGAGTATTAAGATCAGCCGTGGAACACGAGTAAGGGAGCAGAGTAACGCCTCACTCAACCGCCAGATCACCGACGCTACAGAACTGCGCCATCTCGACGAGTTCCTAggaaatcagATGAATGATCTACAGTCCAGGGCTAAGTCTCTCTCAGAGACGGAGGTGATTTTCTTCACAGCCACGACGCAGTTCAGAGACACAATTAAAAGCATGTACTCACTCTCGAACCCTCAGATCAGTTACAAAGGCCTGCTGCAGGGATATAAAACTAAAGTGGCAAGTTTAGCTTCACAGAAGAAGAAGGATGAGGTGCCACTGGTGGTGAATTTATTCCAGTCGGTGCTGGACGGTTTTATCAGAGCCGAGATTAAACGAGTGTCATCAGAGTCTGACCTCACCAAGCCCACAAAAAAGATGAAGAGGATGCGAGAGaatgataagtgtccTGACAGCCCCCTGGATCACTCGTTCTGTACATACCAAGTTAACATCattcagtcatgtgacatgtgCGGCTCGTTCATCTGGGGCATGGAGAAAGCCTGCATGTGCAGTGTGTGTAAGATGGTGTGTCACAGGAAGTGTATGATTAAGATAATAACCCACTGCTCCAAGCATGTGGATAAGAAGacTGAAGCAGGTAAAGTCACTCTGTACTTCGGCGTGCACTTGCCCACTCTGACCAGCAGGGCAGAGCCAGTGCCCTGTGTGTTGGAGAGGATGTTGGAGCATGTGGAGATGAACGGACTCTACACTGAGGGAATTTACCGCAAATCAGGCTCCACCCTCAAAGCTAAAGAGCTCCATCAGCTGCTGGCCacgagtcctCAGAGTACCAGTCTGGATAATTATCAGATCCACACAGTTACAGGTCTGATTAAGTGCTGGTTACGGGAGTTACCTGACCCTCTGATGACCTTTAACCTCTACAACGACTTCCTGTATGCCGCCGATGTGCCAGAGAAATCGGAGAGGCTGCGAGCTATTTACAGGAAGATAGAGGAACTTCCTGCTCCAAACTACACCACGCTGGAACGCCTTATCTTTCACCTAGTAAAAGTGGCGAAAGAGGAGGCTCATAACCGGATGTCTGCTAATGCTCTGGCCATCGTGTTTGCTCCATGTGTCCTGCGCTGTCCTGACGTCTCCGACCCACTGCTCAGCGTGAGAGACCTGCCCAAGACCACATTgtgtttgGAGGTTTTGATCCTGGAACAGATGAAGAGATTTGATGAGAAGATGAAGGAGATACAGCAGCTGGAACATGCCGAGGCTCTTGCAGTTAAACAGCTCACACTGCGCAGACAGAACACGGTCCTGGAGAACCCGAGGGGGAAAGCGGACATGTCTCAGATGGGCAGATCAGATTCGGACATGGAGAACACGCTGCTTGAGAGGATCCGATCTATAAAGCATGAGAAgagtAAACTGGCCTACAGGCTGCCGGACCTGGACAGCTCTGATAACGAGAACCTGGACTGTGAGAGCACAGTGAGCTTGGAGAGTCCCCTCGAGGACAAAATCACTCACCTGGACCTGAAAGGTCAGTAACAGgtttttgtttgttttaccaCTGAAGGACACTTCAGATTCCCCTACTGGTGCGGTACAGTTTAGTGtttgtcctgttagtgttgCTGTAGTTCAATCTGAAACCTCATCAGTCTCTTTATAAGCAGCCTTTGTTAGTAAttgcttgctgctgctgctttgaTATAATGCT

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0043167 ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84695 lncRNA upstream 1466 26464011 ~ 26464314 (+) True G71482
TU84608 lncRNA upstream 170798 26294755 ~ 26294982 (+) True G71408
XR_004578087.1 lncRNA upstream 239365 26225431 ~ 26226415 (+) True LOC117597184
TU84567 lncRNA upstream 239443 26224912 ~ 26226337 (+) False G71381
TU84751 lncRNA downstream 168328 26667762 ~ 26668128 (+) True G71519
TU84789 lncRNA downstream 285138 26784572 ~ 26786560 (+) True G71550
TU84796 lncRNA downstream 308623 26808057 ~ 26856605 (+) True G71557
TU84807 lncRNA downstream 373242 26872676 ~ 26881469 (+) True gng7
TU85145 lncRNA downstream 543269 27042703 ~ 27042912 (+) True G71819
XM_026935870.2 mRNA upstream 21402 26384917 ~ 26444378 (+) True nfatc4
XM_034303643.1 mRNA upstream 89954 26373975 ~ 26375826 (+) False LOC117597079
XM_034303637.1 mRNA upstream 127185 26328701 ~ 26338595 (+) False mettl17
XM_026936585.2 mRNA downstream 3674 26503108 ~ 26515244 (+) True mfsd14a2
XM_026936316.2 mRNA downstream 21282 26520716 ~ 26549993 (+) True insra
XM_034303985.1 mRNA downstream 58769 26558203 ~ 26578423 (+) False arhgef18a
XM_026936656.2 mRNA downstream 58770 26558204 ~ 26578423 (+) True arhgef18a
XM_026936655.2 mRNA downstream 58770 26558204 ~ 26578423 (+) False arhgef18a
TU84616 other upstream 90001 26353189 ~ 26375779 (+) True LOC117597079
TU84618 other upstream 101547 26353189 ~ 26364233 (+) False LOC117597079
XR_003404061.2 other upstream 172996 26288290 ~ 26292784 (+) True zgc:66427
XR_003404105.1 other downstream 164537 26663971 ~ 26664082 (+) True LOC113540735
XR_003404108.2 other downstream 613714 27113148 ~ 27113254 (+) True LOC113540738
trnat-ugu_5 other downstream 989819 27489253 ~ 27489325 (+) True trnat-ugu_5
XR_003404069.1 other downstream 1057083 27556517 ~ 27556648 (+) True LOC113540695
XR_003404070.2 other downstream 1058331 27557765 ~ 27557902 (+) True LOC113540696

Expression Profile