RNA id: XM_034303936.1


Basic Information

Item Value
RNA id XM_034303936.1
length 3530
RNA type mRNA
GC content 0.43
exon number 9
gene id LOC113540242
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 19050150 ~ 19155221 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTGGTCAGGTTTCAAAATTCTGTCGACCATATTATTACTGTTCATACTTTTCGTGCAGCTACAGGGTTcatgttgttttattgtatgttttgtgtACTGAATGTCACACTTAAATACTCTTGGCAAAGTTATCGCTTAATAAATTGTTACGGTTTTAGGATGACTTCACTGGCCTCACCGAGGTTATGTTACCTTAATTttaagcacaggtttatattctaTTGTGCAGTTTTCTGTCACATTCACTtgacagaaaagtgtttgaatGTTACACAAGGATATGTTGCATTGTAGTGATGTAGATGGATCCAACACCGGTtgcttttttctcctttgtCCCCTTTGAGATCAAGTCATATGGCTGATGGATGTCAACTCGTTTTTGTTCATCAGATTAGGGGAATGCTTGCAGCCATTGGTGAACAAGCACAAAGTTCATGCCAGGTGTTCAGCAACCTGTGGAGAAGGGACCCAGAGGTTGCTAGTGGTGTGCAGGAGGCTGGGGCTGAATGGACAGTACCAAACTCTGATTCCAGAGGCCTGTGCTTCTGTTCCGAAGCCCTCGACAGCTCGATCATGTTCCTGTGGATCCTGTGAGAaGACTTTCAAGCCAGTAGCTGCAAAACCAGATCCTGCTATTCTGACCCAGAGGAAGATCTATATTCAATGGAGGAAAGGCCCAAAACTACATTTTGTAGTTGGTGGATATGCTTACTTACTTCCATGGACCTCAATCATGCTGAGTTGCCCTACTCGTCATTTTCATAAAGGCAATATTCGTTGGTTAAAGGATGGAAAACCACTGCTACTTCTGCCTCATGTTTCCATATCTCATATGGGTTACATCAAGATCCAGCAGATCCGTGCCTCAGACGCGGGAATGTATACTTGTGTTGCTGGCCAGGCACAGGAAAATTTTGTCCTCAAACTTCTTGGAAACAAGAAGACGAAGGTGTCAGTTCCAGAATCTGACGTCTGGGCAACAGATGGAGGCAAAAACTCAGCAAAGACTTACCAAATATCAtctaaagagaaagagattctCAATTGTAATCGCTATGACATAGTCGTGCAGCACTTGCTTAATTTAAAAGGTTTGTCCCTGGAGACGTATGTCTCTAAAGAACTGCTGGACGAAGATGCAGTTTTTGATTCTCAGACCCCTCAGTTGCTAGTGGCAGACATGGAAAAACTTGATGAGATAACCCGTAACTTATCTGGTGGTCTCCAGGGCACACAAAAAGAAGAACTTATTACTCAGCTGTTAGATGAACTAACCAAGAAGACTGGTGAAAACAATGATTCCACTTTGGAAGCTCATGAGAAGCAAGAATTCACAACTCCGGAGTACATTTCTCAAGGAAATGATTTAAGACTGGCTTCTCAGTCCACCAGACAATGGAAAGGACCTCTCAGAAGACCAGTGATTGTACAGAAATTTTCAAGAGTCTACAAGTCCCCTCATGAAATAGTGACCAATGCTGGTAGTTTTGTTGTGGTCCCAAGACAGGCCGTGAGGGTGGAGCTTAAGTGTGAAGTACAGGGCAACCCAAAGCCAGTAATGGTTTGGACAAAAGAGGGGATGGAGTTAAAAAATGGCAGCAGAGTAGGCCTGATGCCAGACAGCTCCCTGTACATTGAAGTTCCCAAGGAGACTGACTTTGGATTTTACACGTGTCGAGCCACAAATCATCTGGGGTCCACCTCACTGTCATTTCATGTGCAAAAAGCAGgaAGTGCCTGTGCAGTTGGTATGAGTAAAAGTAACAGCACATGTTCTGACAATTTCCAGTCATCTGAAGGCTGCAGTGGACAACACTGCCCCCACAGATGGCATGTGTCCTCATGGTCTACTTGCTCTGTAAGCTGTGGTGGGGGGCTGCAGAGACGCAATGTGACTTGTCTTGGTGCTACAAATGGAGGACGCTCTTGTAAGGGTGCTGGTAGAAAGCCAACAGCAAGCAAGTCCTGTAACATGCAACCCTGCGTTGGATGGACAGCAACCCCATGGGGCCCTTGCCATGGGCAGTGTGTTGGACCACAGAAAGCACTACAGCACAGACATGTGTTCTGCCAGGACAAGAACAGCACTAGAGTCACCAATCGAATGTGCAGCAGGCAACCAAGGCCTTCCTCACATCGAAACTGCACCACAGATGCCTGTGCTCTGCAGTGGCGTGTTGGGCCATGGACCCAGTGCACTGCCACCTGTGGTCGCCATGGTTTCCAGTCACGCCACGTCACATGCGTTCACCGCCGTAGTGGAAAGCCAGCTCGGGAATTTCACTGCGCCTGGCGGCCTCGCCCTGCGAGCTGGCAGCGCTGCAACATTCTGTCTTGTGGGAGAGGTGATTGCCAAGACAGCACCAGGTACTGTGAGAAGGTCCGACAGCTGGAACTTTGCCCCCTACCCCAGTTTAAAGCACGGTGCTGCCGGTCCTGCAGAGACACCTGAGACTCTACCAGGACAAaaggacagaaacagaaactaaTCCAGAGACTAAGGAACACCTGCAAACCCACCACACAATCCAGCACATGATCCGAAACCAAAGACCATGGTGTGTGATGGCTTGGGGTCACCAGGTCATTCATTAATCAGCCCAATGACAAGTGGGGGGGATGAGACTGGATGCAAACTGTAAACTAATGAacattgattttaatttaacttgAATGAAGGCTTTGATTTAATCGTATTTGATTTTTGGTTTACTCTTTCTTTGGTTTTGCATTTACTGCCTGTCTGATGGTCCAGAAAGATGTAAGACGTTTTGAAATTCACTGGATTGCACATTTTAGACTCCATCCTTATTAAATCAGAATAGCCTCTAGTTATGAATGAATGTCCACAGGGGTTTGCTGGAGCCTTGGATCTTAACCATTTCAGTCAGTGTAACCCAAATTGGCTACCATATAGCTACTGGAAAACCATATAGCAATGTGGAAACTTGCTATATCCCTGTAATCTGCCACATAAAGGAATGGTAGACAAAAAAATAGGCAAatgtgtatttaaatataacCTCTCAAATAATGTAATTTTGAACAGGGAGATGTTTGACTTTtaactaatgaaaaaaaagctgcactaaTGTTATTTGGAAATCATAATGAGTTATGTTGCTGTCTTAGTAATAGGCAATGTATCCTATGGCCCAGTATTACAAATGTGACTTCACTTAAAACATATGGGACTTCAGTGTATGGAAACCCTGATAGCTTTGCACTCATAATTTCCAGGTCCATTTTCAAATGGGGCTGGATATTGTTTGATGttaattgttattgttgtttggttttgcttgtgttattcttttataaattgaacttgtctttgtttttgtccaAGATTTAACCACTTATTAATATAGTGTAGTTGTGCCTAGTATTTATCGTCCCTAAATAAGTGTTATTTGCATAAGTTGTTCTTCATTTTATAGAAAGAATAATAAATTCCCCTTCTCACTCAGGCATAGGGAAAAGAATAATGCACttgtagaaaatattaaaaacacaatgaaTCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79437 lncRNA downstream 102611 18947318 ~ 18947539 (-) True G67016
XR_003403990.2 lncRNA downstream 535432 18499351 ~ 18514718 (-) True LOC113539972
XR_003403989.2 lncRNA downstream 535432 18501531 ~ 18514718 (-) False LOC113539972
TU79023 lncRNA downstream 663160 18386561 ~ 18386990 (-) True G66651
TU78732 lncRNA downstream 1029341 18015144 ~ 18020809 (-) True G66387
TU79924 lncRNA upstream 270192 19328348 ~ 19340529 (-) True G67454
TU79923 lncRNA upstream 274918 19333074 ~ 19339158 (-) True G67453
TU80028 lncRNA upstream 547336 19605492 ~ 19656442 (-) True G67527
TU80030 lncRNA upstream 558292 19616448 ~ 19629949 (-) True G67528
TU80038 lncRNA upstream 711201 19769357 ~ 19824919 (-) True G67535
XM_026937056.2 mRNA downstream 702 19044822 ~ 19049448 (-) True LOC113540506
XM_034303508.1 mRNA downstream 702 19045959 ~ 19049448 (-) False LOC113540506
XM_026935902.2 mRNA downstream 7881 19034492 ~ 19042269 (-) True larp7
XM_026935905.2 mRNA downstream 21252 19025133 ~ 19028898 (-) True plin2
XM_034303840.1 mRNA downstream 26243 19015356 ~ 19023907 (-) True haus6
XM_026936592.2 mRNA upstream 9620 19067776 ~ 19155221 (-) False LOC113540242
XM_026935853.2 mRNA upstream 282477 19340633 ~ 19344519 (-) True ostc
XM_026936567.2 mRNA upstream 289484 19347640 ~ 19351961 (-) True rpl34
XM_026937017.2 mRNA upstream 368185 19426341 ~ 19429551 (-) True LOC113540492
XM_034304029.1 mRNA upstream 375237 19433393 ~ 19444394 (-) True LOC113539975
XR_003404118.1 other downstream 32750 19017270 ~ 19017400 (-) True LOC113540750
XR_003404117.1 other downstream 33197 19016823 ~ 19016953 (-) True LOC113540749
XR_003404075.1 other downstream 1134379 17915630 ~ 17915771 (-) True LOC113540701
TU78662 other downstream 1220024 17792226 ~ 17830126 (-) False map11
trnas-uga other downstream 1278919 17771150 ~ 17771231 (-) True trnas-uga
XR_003404109.2 other upstream 164583 19222739 ~ 19222843 (-) True LOC113540739
TU80099 other upstream 830023 19888179 ~ 19888726 (-) True G67587
XR_004578055.1 other upstream 873434 19931590 ~ 19943834 (-) True LOC113539792
XR_004578057.1 other upstream 873434 19931590 ~ 19943367 (-) False LOC113539792
XR_004578056.1 other upstream 873434 19931590 ~ 19943367 (-) False LOC113539792

Expression Profile