RNA id: XM_026936599.2


Basic Information

Item Value
RNA id XM_026936599.2
length 3723
RNA type mRNA
GC content 0.46
exon number 13
gene id vps4b
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27941464 ~ 27956911 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCAAGCCTGATGGGTGTTACAGGTCAGACAATACACAATCACACGAGCTCACACACCTTCTGCTTCACCATGCTTTCAGAGACTCGCTCGTGATCACGGAGTATAATGGAGCTCACTAACTTACAGAAAGCCATAGTGATCGCCACCAAAGCCTCACTGGAGGACGAGGCTGGGAATTACGAAGAGGCCATCAAATCCTACCACCATGCTGTGAAGCATTTTCTGCACATCCTAAAGCGCGAGCCTCAGGGGAAAGACGGAAACCAGAAGATCCGAGAGAAGTGCTCTCAGTACCTGGACCGAGCCGAGAAGCTGCGGGAGTATCTAGATGAGAAACAGAAAGCTATAGATCTGGCCAGTAAGGCGGCGCAGGAGGACAAGGCGCAGAATTACGAGGAGGCACTGAGGCTGTACCAACACGCAGTTCAGTACTTCCTACACGTCATCAAATATGAAGCTCAGGGGGACAAAGCCAAACAGAGCATCAGAGCCAAGTGTGCGGAGTACCTGGACCGAGCGGAGAAGCTGAAAGAGTatctgaagaagaaggagaaagcgCCGGCTAAACCCGTCAAAGAGTCTCAGTCCGATGAAAAAGGAAACGACAGCGATGAGGGAGAAAATCCAGAGAAGAAGAAATTCCAGAACCAACTTTCAGgggCCATCGTCATGGAGAAACCAAACATCCAGTGGAACGATGTCGCCGGACTCGAAGGAGCCAAAGAGGCCCTGAAAGAAGCCGTTATTCTGCCCATTAAATTCCCCCACCTCTTCACAGgtAAGCGCACTCCATGGAGGGGGATCCTGCTCTTCGGTCCTCCTGGAACGGGAAAGTCATACCTGGCCAAGGCCGTGGCCACCGAGGCCAACAACTCCACCttcttctccatctcctcctcagACCTGGTGTCCAAGTGGCTAggagaaagtgaaaaGCTGGTGAAGAATCTGTTCGAGCTGGCCAGAGAACACAGTCCATCCATCATCTTCATCGACGAGATCGACTCTCTGTGCGGCTCCAGGAGCGAGAACGAGAGCGAGGCGGCTCGCAGGATCAAGACCGAGTTCCTGGTGCAGATGCAGGGTGTTGGGAATGACAACAAGGGAATCCTGGTGCTTGGAGCAACCAACATCCCGTGGACACTCGACTCTGCCATCAGGAGACGatttgaGAAGCGTATCTACATCCCTCTGCCGGAGGAACACGCCCGCTCCTTCATGTTTAAGCTGCATCTGGGCACCACGCCCAACAGCCTGACCGACGCTGACTACGTCACGCTGGGCAAGAAGACCGAGGGCTACTCGGGCGCCGACATCAGCATCATAGTGCGCGACGCTCTTATGCAGCCCGTCAGGAAAGTGCAATCCGCTACACACTTCAAAAGGGTACGAGGACCCTCCAGAGACAACCCCAACGTGATCATGGATGACCTTCTGACCCCGTGCTCTCCCGGAGATCCTCAGGCCATCGAGATGTCATGGATGGAGGTTCCTGGAGATAAACTCCTGGAGCCTGTGGTTAGCATGGCGGACATGTTGCGATCGCTGGCCAACACGAAGCCCACCGTGAACGAGCAGGATCTGGAGAAGCTGAAGAAATTCACAGAGGATTTTGGCCAGGAGGGTTGAGCGAGGAACCAAAGCAGCAGGGTCCAGGATTTGTAAAGTCTTCTCCTCGTCTACTCTTCCctcttttcccctcttttcttcCTGGACTTCCTGTTGGACTGGCGAGTGGAAGGACAGCTCAGTAAAGGCCAGTCTGGAGCCTACATGGGACCGGATTTACATTTATGCGTTTCATTTTCTAATAGTAGTTATTTTGGGTTTTTAAAAGCATTCTCAGTTTATTTGGATTCACTACGTCACTGGTggttaaactgtaaaaatttcTGTTAAATAACGAGCACTAATTTGAATTGGGCATGGGGCTGATGTTCAGAATTTTCCCATCATGATAATCTCCAAACTTCATATCGTGGTTTACAATATTATCAAGTGGCTATACACTTACAAGCACAGAGGACACTATCTAGGCAGTGCAAAGGTAGTAACaatgttgtgcatgctgaatATCACAGTATATCACATTTCTGAGTATCGGCACGTGCCTCAATCTGAGAAGTGAGTAGTGATGAGCCGTATTTGGATCGTGTCAGTTTGTGGGCTGTGTTCCAATTCGCACATGATGAAGCTGGCCGTAGAGCTCCCCTTTATTCCTCCATACAAGTGCCGTTTAAAGAGTCGTGGACGTAACCGCAAACACGATAttgaaatctttatttaaatagcCATCAAAAACAGTGATTTTAGGTTTTACATTTGGCAAGAGCCCTTTCAGTCTACAATTTAATGCGCCCTAGTCGACTTTGATTACCACTCGGGAGTGTGTACCATCGACATCACACAGCTATCTCTAGCTACTTTACATAGCTGGTTTCCGTGGTGATTTGTTCAGGCAATTGCTAGCAGGAATGATACAGTTGGTTTCCATGGCTATTTGTACAGGCTATCTCTAGCAGAAAATGACAGTTTGGTTTCCACGGCGATTTCTACAGGCTAATGCTAGCAAAAACAACATGGTTTCCATGGTGATTTGTACAGGCTACTTTTTCCTGCTAGCATGCTCATTTTAACGCTCATTCATCGCTTCAGCGATCAGCTTCGTCCGCCATTTTGAAAAGGAAATTGCATCAGACCAGCATGAGTTCTAGGTAAGATTTCCTCCTGAAGTGTACAGTGATGTTAACGTGATCCCTCAGGACTTCAAAGGGCTTATCTGATGAAAGTAACGCAAACTGattaaagtaatggcacccaAGATGGCGACTAAGACGGTGGGGTGTGAATTCAGTTGTAATACACTTTTACCTTTTTCCTTTGAGCTTTCCCTGTGCTAATTATGCTAGCTAATATCATGCTAGCAGCGTGAAGTTTGCAAAGTTTCAGATTCGTACAGATCAGAGTCGCTACATGTAACTCAAATTGATCTCagctatttaaatatttcattatgttAGAATGCAACGCATTTTAGGGCTTATAATGAAACTGAACAGCGCTTAAGATGGCACCGATGGGCAAAATCAGAGGAGGAGTCAACAAGGGCGCATGAAACGCAAAATTGTTACAAGGCTTTGATGGGTGTAGACCTTGTGAAGGTCACATGACTACGATAACATCTTAAgttctgtaaatgttttgtgttataTTACGGAACCGGGAATCTTTAAGTAgtatatatcaaatatattgTACTTTCTTTCAAATTCAATGTTATTTTTGGCCAACAATTATGGGATGTGACAGGAAGGCGTCTTAGTGACTCATGGTCACGTGACGCAAAgccaactattttttttttttttttttttttttggaccatCTTGCTGCAGCAAACTTGTGCCTTCAATAcgtttttcttttacataaaaacaaaccaaatctTTGTGTATAtctcataaatgttaataaacatttatgcgAGGCAAAAAAAGATATTTGCACATTTCACTTCATTCTCCTTCACTGTCTGATTGGATACAGCTTCTCTCCTGTGCACTTACGGTATTGGGGTTTCTATATAacaaactttacattttatcCTTCATAgcctttttgttgtttaaactTAAAGTTTTTGTTTCTTCATCAGATTTTGGTGTTGCTCATGTACTTCTTTTATCATACAcgtgtaaataaaagctgagatTGAAAAACAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K12196 VPS4; vacuolar protein-sorting-associated protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85492 lncRNA upstream 382037 27556204 ~ 27559427 (+) True LOC113540592
XR_003404048.2 lncRNA upstream 382354 27556085 ~ 27559110 (+) False LOC113540592
TU85491 lncRNA upstream 382362 27556204 ~ 27559102 (+) False LOC113540592
TU85493 lncRNA upstream 382451 27556204 ~ 27559013 (+) False LOC113540592
TU85494 lncRNA upstream 385758 27553127 ~ 27555706 (+) True G72118
TU85626 lncRNA downstream 54833 28011744 ~ 28012459 (+) True G72236
TU85674 lncRNA downstream 157540 28114451 ~ 28122142 (+) True G72276
TU85711 lncRNA downstream 345940 28302851 ~ 28383408 (+) False insig1
TU85733 lncRNA downstream 359493 28316404 ~ 28328181 (+) False htr5ab
TU85742 lncRNA downstream 512037 28468948 ~ 28471765 (+) True G72336
XM_034304019.1 mRNA upstream 2040 27857336 ~ 27939424 (+) True kmt2cb
XM_034304023.1 mRNA upstream 2040 27857336 ~ 27939424 (+) False kmt2cb
XM_034304022.1 mRNA upstream 2040 27857336 ~ 27939424 (+) False kmt2cb
XM_034304025.1 mRNA upstream 2040 27857336 ~ 27939424 (+) False kmt2cb
XM_034304020.1 mRNA upstream 2040 27857336 ~ 27939424 (+) False kmt2cb
XM_034303291.1 mRNA downstream 974 27957885 ~ 27966288 (+) True kdsr
XM_034303869.1 mRNA downstream 15730 27972641 ~ 28008193 (+) True bcl2b
XM_026937237.2 mRNA downstream 15734 27972645 ~ 28008193 (+) False bcl2b
XM_026937080.2 mRNA downstream 90288 28047199 ~ 28054319 (+) True nmur1b
XM_034303328.1 mRNA downstream 108156 28065067 ~ 28069266 (+) False LOC113539840
trnat-ugu_8 other upstream 320081 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 320787 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 383562 27557765 ~ 27557902 (+) True LOC113540696
XR_003404069.1 other upstream 384816 27556517 ~ 27556648 (+) True LOC113540695
trnat-ugu_5 other upstream 452139 27489253 ~ 27489325 (+) True trnat-ugu_5
TU86406 other downstream 917445 28874356 ~ 28912104 (+) True G72873
TU86682 other downstream 1663082 29619993 ~ 29623037 (+) False asip2b
TU87615 other downstream 2789220 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 2789220 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 3104819 31061730 ~ 31097888 (+) False spsb4a

Expression Profile